View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2671_low_5 (Length: 524)
Name: NF2671_low_5
Description: NF2671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2671_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 73 - 512
Target Start/End: Original strand, 30837237 - 30837675
Alignment:
| Q |
73 |
caatcgaaagatgttcaatattccctctggattgctcacacacgcctnnnnnnnntacacgttttggattcagtggctcaagtgggtaatgatatatgtg |
172 |
Q |
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| T |
30837237 |
caatcgaaagatgttcaatattccctttggattgctcacacacgcctaaaaaaaatacacggtttggattcagtggctcaagtgggtaatgatatatgtg |
30837336 |
T |
|
| Q |
173 |
gagactgttgattactcgattatagttaatgatgaggtagttggtccgatttataccaggtcgagggttgagacaaggaggtcatttgccgccatatata |
272 |
Q |
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| T |
30837337 |
gagaccgttgattactcgattatagttaatgatgaggtagttgttccgatt-ataccaggtcgagggttgagacaaggaggtcatttgccgccatatata |
30837435 |
T |
|
| Q |
273 |
tttattatttgggtgcaacaatatatgctcctatagtttctcatcttttatttgtgaatgactatttttactttttaaagttaagccttctaaagcgaca |
372 |
Q |
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| T |
30837436 |
tttattatttgggtgcaacaatatatgctcctatagtttctcaccttttatttgtgaatgactatttttactttttaaagttaagccttctaaagcgaca |
30837535 |
T |
|
| Q |
373 |
attatgacatattataacggtgtatgaacaaacatcaggacaagcaattaattttcaaaagtcagaatttttcttcagcaggtatttgacccaagcaatg |
472 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30837536 |
attatgacatattatagcggtgtatgaacaaatatcaggacaagcaattaatttccaaaagtcagaatttttcttcaacaggtatttgacccaagcaatg |
30837635 |
T |
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| Q |
473 |
caaaatagcattacgaacattcttggggtgcaagctattc |
512 |
Q |
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| T |
30837636 |
caaaattgcattacgaacattcttggggtgcaagctattc |
30837675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 30837182 - 30837219
Alignment:
| Q |
18 |
agaccaactaccccataatttagcatgagttgagcggt |
55 |
Q |
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| T |
30837182 |
agaccaactaccccatattttagcatgagttgagcggt |
30837219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 283
Target Start/End: Complemental strand, 35222420 - 35222290
Alignment:
| Q |
152 |
aagtgggtaatgatatatgtggagactgttgattactcgattatagttaatgatgaggtagttggtccgatttataccaggtcgagggttgagacaagga |
251 |
Q |
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| T |
35222420 |
aagtggataatgatgtgtgtggagactaccgactactcggtaatagttaatgacgaggcagttggtccta-ttattccaggtcgaggactaagacaagga |
35222322 |
T |
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| Q |
252 |
ggtcatttgccgccatatatatttattatttg |
283 |
Q |
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| T |
35222321 |
gatcctttgtcgccatacttattcattatttg |
35222290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 19936151 - 19936087
Alignment:
| Q |
140 |
attcagtggctcaagtgggtaatgatatatgtggagactgttgattactcgattatagttaatga |
204 |
Q |
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||||||||| |||| ||| ||||||| | |||||||||||| || |||||| |||| |||||||| |
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| T |
19936151 |
attcagtgggtcaaatggataatgatgtgtgtggagactgtcgactactcggttattgttaatga |
19936087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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