View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2671_low_7 (Length: 427)
Name: NF2671_low_7
Description: NF2671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2671_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 30789855 - 30790206
Alignment:
| Q |
1 |
accctcaaaattgtaaatatcggcaactctttcggacaaaatagtctatgatttttgtaaatacacaaatgcaatgttaatcaaaataatccctccatta |
100 |
Q |
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| T |
30789855 |
accctcaaaattgtaaacatcagcaactctttcggacaaaatagtctatgatttttgtaaatacacaaatgcaatgttaatcaaaataatccctccatta |
30789954 |
T |
|
| Q |
101 |
gctattatttatatgacacattaaccaaatatgcaaccttgttgatctcacatcaatgtcagcacactaggaactttatttgcaagtatttactccatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
30789955 |
actattatttatatgacacattaaccaaatatgcagccttgttgatctcacatcaatgtcagcaaaccaggaactttatttgcaagtatttactccatga |
30790054 |
T |
|
| Q |
201 |
acaattgcaatgaccaataaatttgtcattgtgatgatcaaaatttcataggaaaattagtccctaatgatttgaaatgtgccacttcatagtctctaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30790055 |
acaattgcaatgaccaataaatttgtcattgtgatgatcaaaatttcataggaaaattagtccctaatgatttcaaatgtgccacttcatagtctctaag |
30790154 |
T |
|
| Q |
301 |
gtgggagttattggagggatcattttaaagtacattttacaatttcggtaatgtattttttaatt |
365 |
Q |
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|| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30790155 |
gtaggagttattggag-------------gtacattttacaatttcggtaatgtattttttaatt |
30790206 |
T |
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