View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2672_low_11 (Length: 293)
Name: NF2672_low_11
Description: NF2672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2672_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 10267926 - 10268134
Alignment:
| Q |
1 |
catcataatcagggtcgtgagtttagtagaacaccgcctaagaaacagattcaaaagaagagtgctttacttaggattcagaatgcgaaacctaatcata |
100 |
Q |
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| T |
10267926 |
catcataatcagggtcgtgagtttagtagaacaccgccgaagaaacagattcaaaagaagagtgctttacttaggattcagaatgcaaaacctaatcata |
10268025 |
T |
|
| Q |
101 |
ggaaccgtgatgcttatgttaatgattctaacggtaatttctttaggggtaatggtaaagatcaacatggaagagggtacatgaaaggtggagagaggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
10268026 |
ggaaccgtgatgcttatgttaatgattctaacggtaatttctttaggggtaatggtaaagatcaacatggaagagggtacatgaaaggtgaagataggaa |
10268125 |
T |
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| Q |
201 |
aaaagggag |
209 |
Q |
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||||||||| |
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| T |
10268126 |
aaaagggag |
10268134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 34899913 - 34899975
Alignment:
| Q |
202 |
aaagggagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
264 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899913 |
aaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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