View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2672_low_1_N (Length: 482)
Name: NF2672_low_1_N
Description: NF2672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2672_low_1_N |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 14 - 459
Target Start/End: Complemental strand, 7934943 - 7934497
Alignment:
| Q |
14 |
aggggagggtatcagtgtggacaattatgc-aaggccattgcatttatataatggatgtacataagacacaacaatgaaaaataagataatgatgaaaca |
112 |
Q |
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| T |
7934943 |
aggggagggtatcagtgtggacaattatgtgaaggccattgcatttatataatggatgtacataagacacaacaatgaaaaataagataatgatgaaaca |
7934844 |
T |
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| Q |
113 |
tttgtttgtaatggagataaacattgttcccaacaaagcaaactatgcaaaacattggccttaacttttggttaaatattaattcatataatcatcatag |
212 |
Q |
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| T |
7934843 |
tttgtttgtaatggagacaaacattgttcccaacaaagcaaactatgcaaaacattggccttaacttttggttaaatattaattcatataatcatcctag |
7934744 |
T |
|
| Q |
213 |
gtagtcactaaatggtatcttatgaccaattattattttttaatctaaaatctgaatcttatcgagaaacaaagaactcgtctatggcacatattgtaac |
312 |
Q |
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| T |
7934743 |
gtagtcactaaatggtatcttatgaccaattattattttttaatctaaaatctgaatcttatcgagaaacaaagaactcgtctatggcacatattgtaac |
7934644 |
T |
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| Q |
313 |
aatgagaaacaaagaactcgtctatggcacatattgtaacaatggaatgaaagaataacgaacaaaatattatgtatttttcatgagaaatattacataa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7934643 |
aatgagaaacaaagaactcgtctatggcacatattgtaacaatggaatgaaagaataatgaacaaaatattatgtatttttcatgagaaatattacataa |
7934544 |
T |
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| Q |
413 |
tacacaggaaaaaatggaacaggggttaccaaatgtggtgctgatga |
459 |
Q |
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| T |
7934543 |
tacacaggaaaaaatggaacaggggttaccaaatgtggtgctgatga |
7934497 |
T |
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