View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2672_low_2 (Length: 414)
Name: NF2672_low_2
Description: NF2672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2672_low_2 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] scaffold0760 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 133 - 363
Target Start/End: Original strand, 13016919 - 13017149
Alignment:
| Q |
133 |
ttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13016919 |
ttaatctactcaacgtccaaacccaagaaaccacttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttc |
13017018 |
T |
|
| Q |
233 |
catccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaac |
332 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13017019 |
catccaaatcgaccaaattgtcgcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaac |
13017118 |
T |
|
| Q |
333 |
aagttatgtggagttatgaaatcaatctcaa |
363 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |
|
|
| T |
13017119 |
aagttatgtggagttatgaaattaatctcaa |
13017149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 45 - 363
Target Start/End: Complemental strand, 11272637 - 11272320
Alignment:
| Q |
45 |
agcagatccaaaaacagcaccattcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactca |
144 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| ||||||||| ||| ||||||| |||||||| ||||| ||||| | ||||||||| ||||||| |
|
|
| T |
11272637 |
agcagatccaaaaacagcgtcgttcatcttctatttgggcactctctaggaatccaagttcactcatagaagaggaaagaagctatctttaacctactca |
11272538 |
T |
|
| Q |
145 |
acgtccaaacccaagaaaccgcttttatctcatccactagttcctctacttccttcactttg-ttcttaaaaatcctagcatttctttccatccaaatcg |
243 |
Q |
| |
|
||||||||||||||||||||||||| || |||| ||| | |||||| |||||||| ||||| || || |||||||| |||||||||| | | |||||| |
|
|
| T |
11272537 |
acgtccaaacccaagaaaccgctttgatttcattcacaatttcctccacttcctt-tctttgattattgaaaatccttgcatttcttt-ctttcaaatca |
11272440 |
T |
|
| Q |
244 |
accaaattgttgcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtgg |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||| | | ||||| |||||| ||||||||||||||||||| |||| |||||||||| |
|
|
| T |
11272439 |
accaaattgttgcatgccaaatcaaccaaaaccccttcttaagtatcttagatttaacttcattattccaacattcaaattgcacaaataagttatgtgt |
11272340 |
T |
|
| Q |
344 |
agttatgaaatcaatctcaa |
363 |
Q |
| |
|
| | || |||| |||||||| |
|
|
| T |
11272339 |
aatgataaaatgaatctcaa |
11272320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 13015988 - 13016118
Alignment:
| Q |
9 |
accacagaggggcccgagatcaacacaaaccccttaa----gcagatccaaaaacagcaccattcatcttctattaaagcactctctcggattccaagtc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13015988 |
accacagaggggcccgagatcaacacaaaccccttaattaagcagatccaaaaacagcaccattcatcttctattaaggcactctctcggattccaagtc |
13016087 |
T |
|
| Q |
105 |
cactcataaaagagaaaagaggttatcttta |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
13016088 |
cactcataaaagagaaaagaggttatcttta |
13016118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 54 - 325
Target Start/End: Original strand, 1479434 - 1479704
Alignment:
| Q |
54 |
aaaaacagcaccattcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaa |
153 |
Q |
| |
|
||||||||||| |||||||| |||| | ||||||| |||||||||||||||||||||||||| || || | ||||||||||||||||| ||||||| |
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|
| T |
1479434 |
aaaaacagcacatttcatcttttatttaggcactcta--ggattccaagtccactcataaaagaggaacgatgctatctttaatctactcagcgtccaat |
1479531 |
T |
|
| Q |
154 |
cccaagaaaccgcttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgt |
253 |
Q |
| |
|
|||| ||||||||||| ||||| || |||| || || || |||||| ||||||| | |||||||| |||||||||||| ||||| || ||||||| || |
|
|
| T |
1479532 |
cccacgaaaccgctttgatctcgtcaactacctcttccacctccttctctttgttggtgaaaatccttgcatttctttccttccaagtcaaccaaatggt |
1479631 |
T |
|
| Q |
254 |
tgcatgccaaatcaac-caaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattg |
325 |
Q |
| |
|
||| |||||||||| ||||||||||| | || |||||||||| | | ||| ||| |||||| |||||||| |
|
|
| T |
1479632 |
ggcacaccaaatcaacaaaaaaacctttcctttgtcttttagagaccgcctcattataccaacactcaaattg |
1479704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 15316594 - 15316524
Alignment:
| Q |
211 |
taaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttc |
281 |
Q |
| |
|
|||||||||| ||||| |||||| |||||||| |||||||| || |||||||||||| ||||||||||| |
|
|
| T |
15316594 |
taaaaatcctcgcattcctttccctccaaatcatccaaattgccgcgtgccaaatcaactaaaaacctttc |
15316524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 30995389 - 30995318
Alignment:
| Q |
203 |
tttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaa |
274 |
Q |
| |
|
|||||| |||||||||| |||||| || ||| |||||||| |||||| | ||| ||||||||||||||||| |
|
|
| T |
30995389 |
tttgtttttaaaaatccgagcattcctctccttccaaatcatccaaatagatgcgtgccaaatcaaccaaaa |
30995318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 58 - 346
Target Start/End: Complemental strand, 1034394 - 1034105
Alignment:
| Q |
58 |
acagcaccattcatcttc-tattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaaccc |
156 |
Q |
| |
|
|||||||| ||||||| | |||| | ||||||| | |||||||||||||||||||||||||| || || | ||||||||||||||||||||||||||||| |
|
|
| T |
1034394 |
acagcacctttcatctccctatttaggcactctttaggattccaagtccactcataaaagaggaacgatgctatctttaatctactcaacgtccaaaccc |
1034295 |
T |
|
| Q |
157 |
aagaaaccgcttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgc |
256 |
Q |
| |
|
||||||||||||| ||||||||||||| || | || |||||| ||||||| ||||||||||| |||||||||||| |||||||| |||||||||| || |
|
|
| T |
1034294 |
aagaaaccgctttaatctcatccactatctcaccaacctccttcgctttgttattaaaaatccttgcatttctttccttccaaatcaaccaaattgtcgc |
1034195 |
T |
|
| Q |
257 |
atgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagt |
346 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| | ||| ||| || ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
1034194 |
gtgccaaatcaaccaaaaacctttcttatgtctcttagaaaccacctcattactccaacattcaaattgtacggccaagttatgtggagt |
1034105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 93 - 346
Target Start/End: Original strand, 2920962 - 2921214
Alignment:
| Q |
93 |
ggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccactagttcctcta |
192 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| | ||||||||| ||||||||| ||||||||||||||| ||||| || || ||||| | |||||| | |
|
|
| T |
2920962 |
ggattccatgtccactcataaaagaggaaagaagctatctttaacctactcaacatccaaacccaagaaagtgctttaatatcgtccacaatttcctcca |
2921061 |
T |
|
| Q |
193 |
cttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttcttatgcctttt |
292 |
Q |
| |
|
| |||||| || ||| || || ||||| || ||||||||| |||||||||||||||| || | |||||||||||||||||| | ||||||||||| || |
|
|
| T |
2921062 |
catccttcctttggttattgaagatccttgcgtttctttccttccaaatcgaccaaatagtagtgtgccaaatcaaccaaaaatccttcttatgcctctt |
2921161 |
T |
|
| Q |
293 |
agagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagt |
346 |
Q |
| |
|
|| || ||||| ||||||||| |||| || |||||||||||||| ||||| |
|
|
| T |
2921162 |
cgattcca-ttcaccattccaacaaacaaaatgagcaaacaagttatgaggagt |
2921214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 18246572 - 18246662
Alignment:
| Q |
93 |
ggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccacta |
183 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||| | |||||| || ||||||||| ||||||||||||||| |||||| || |||| ||||| |
|
|
| T |
18246572 |
ggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcacta |
18246662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 32549008 - 32548941
Alignment:
| Q |
54 |
aaaaacagcaccattcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaa |
121 |
Q |
| |
|
|||||||||||| ||||||||||||| | || | ||| |||||| ||||||||| |||||||||||| |
|
|
| T |
32549008 |
aaaaacagcacccttcatcttctatttagacattatctaggattctaagtccacttataaaagagaaa |
32548941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 8407567 - 8407533
Alignment:
| Q |
245 |
ccaaattgttgcatgccaaatcaaccaaaaacctt |
279 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
8407567 |
ccaaattgttgcgtgccaaatcaaccaaaaacctt |
8407533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 7e-62; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 84 - 316
Target Start/End: Complemental strand, 8273904 - 8273672
Alignment:
| Q |
84 |
cactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccacta |
183 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
8273904 |
cactctctaggattccaaatccactcataaaagaggaaagaagctatctttaatctactcgtcgtccaaacccaagaaaccgccttaatctcatccacta |
8273805 |
T |
|
| Q |
184 |
gttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttctt |
283 |
Q |
| |
|
||||| ||||| |||| || || ||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| || || || |
|
|
| T |
8273804 |
actcctccacttctttcatttgattgttaaaaatccttgcatttctttccttccaaatcgaccaaattgtcgcatgccaaatcaaccaaaaccccttttt |
8273705 |
T |
|
| Q |
284 |
atgccttttagagagcacttcactattccaaca |
316 |
Q |
| |
|
| ||||||| ||| | || |||||||||||||| |
|
|
| T |
8273704 |
aagccttttggagggaacctcactattccaaca |
8273672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 45 - 340
Target Start/End: Complemental strand, 9936506 - 9936208
Alignment:
| Q |
45 |
agcagatccaaaaa---cagcaccattcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctac |
141 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| | ||||| ||| || ||||||||||||||||||||||| || || | |||||||| ||| | |
|
|
| T |
9936506 |
agcagatccaaaaaagccagcacctttcatcttctatttaggcactgtctagggttccaagtccactcataaaagaggaacgatgctatctttagtctgc |
9936407 |
T |
|
| Q |
142 |
tcaacgtccaaacccaagaaaccgcttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaat |
241 |
Q |
| |
|
||||| |||| |||||||| ||||||| ||||||||||||| ||| | || |||||| |||||| || ||||||| |||||||||||||||||||| |
|
|
| T |
9936406 |
tcaacatccacacccaagacaccgcttcaatctcatccactaactccccaacatccttctctttgtgattgaaaatccgtgcatttctttccatccaaat |
9936307 |
T |
|
| Q |
242 |
cgaccaaattgttgcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatg |
340 |
Q |
| |
|
| ||||||| || ||||||||||||||| ||||||||||| || ||||| | |||| ||| ||| |||||||||| ||||| || |||||||| ||||| |
|
|
| T |
9936306 |
caaccaaatagtggcatgccaaatcaacaaaaaacctttcctaagccttctcgagaccacctcattattccaacactcaaaatgcgcaaacaaattatg |
9936208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 67 - 348
Target Start/End: Original strand, 37269843 - 37270123
Alignment:
| Q |
67 |
ttcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgc |
166 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||||||||||||||||||| || || | |||||| | |||||||||| ||||| |||||| | | |
|
|
| T |
37269843 |
ttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaagatataac |
37269942 |
T |
|
| Q |
167 |
ttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatc |
266 |
Q |
| |
|
||| || || ||||| | || || || |||||| ||| |||||||||||||| ||||||||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
37269943 |
tttgatttcctccacaatctcatccacatccttcgcttgattcttaaaaatcctcgcatttctt-ccttccaaatcgtccaaattgttgcatgccaaatc |
37270041 |
T |
|
| Q |
267 |
aaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagtta |
348 |
Q |
| |
|
| ||||| ||||| || | ||||| || ||| |||||||||||||| |||||||| |||||| |||||| ||||||| |
|
|
| T |
37270042 |
atccaaaccccttttttgagtcttttggaactcacctcactattccaacaatcaaattgcacaaacaggttatgcggagtta |
37270123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 67 - 348
Target Start/End: Complemental strand, 42941325 - 42941044
Alignment:
| Q |
67 |
ttcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgc |
166 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||||||||||||||| || || | |||||||| |||||||||| || || |||||| | | |
|
|
| T |
42941325 |
ttcatcttctattacgacattctctaggattccaagtccactcataaaagaggaaggaagctatctttagtctactcaacaccccaaaccaagataaaac |
42941226 |
T |
|
| Q |
167 |
ttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatc |
266 |
Q |
| |
|
||| || || ||||| | || || || |||||| ||| |||||||||||||| |||||| ||||| ||||||||| ||||||||||||||| |||||| |
|
|
| T |
42941225 |
tttgatttcctccacaatctcatccacatccttcgcttgattcttaaaaatcctcgcatttttttccttccaaatcgtccaaattgttgcatgtcaaatc |
42941126 |
T |
|
| Q |
267 |
aaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagtta |
348 |
Q |
| |
|
| ||||| ||||| || | ||||| || ||| |||||||||||||| |||||||| |||||| |||||| ||||||| |
|
|
| T |
42941125 |
atccaaaccccttttttgagtcttttggaactcacctcactattccaacaatcaaattgcacaaacaggttatgcggagtta |
42941044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 281
Target Start/End: Original strand, 30503004 - 30503202
Alignment:
| Q |
83 |
gcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccact |
182 |
Q |
| |
|
||||||||||||||||||| |||||| || ||||| |||| | |||| | ||||||||||||| |||| |||||| |||||| || || |||||| |
|
|
| T |
30503004 |
gcactctctcggattccaacaccactcgtagaagaggtaagaagctatcctcaatctactcaacgaccaacaccaagatgtcgctttaatgtcttccact |
30503103 |
T |
|
| Q |
183 |
agttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttc |
281 |
Q |
| |
|
| || || | | || | || ||||||||| ||||| ||||| |||||| |||||||| |||||| |||||||| ||||||||||||||| ||||| |
|
|
| T |
30503104 |
atctcatcgaagtttttgaattggttcttaaagatcctcgcattcctttccttccaaatcatccaaatagttgcatgtcaaatcaaccaaaaagctttc |
30503202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 36404064 - 36404166
Alignment:
| Q |
67 |
ttcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgc |
166 |
Q |
| |
|
||||||||||||| || || ||||| ||||||||||||||||| || ||||| || || | |||||| | ||||||||||| ||||| |||||| ||| | |
|
|
| T |
36404064 |
ttcatcttctatttaaacattctctaggattccaagtccactcgtagaagaggaaggaagctatcttaagtctactcaacgcccaaaaccaagataccac |
36404163 |
T |
|
| Q |
167 |
ttt |
169 |
Q |
| |
|
||| |
|
|
| T |
36404164 |
ttt |
36404166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 37484904 - 37484963
Alignment:
| Q |
210 |
ttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaac |
269 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| |||||||| | |||||||||||||| |
|
|
| T |
37484904 |
ttaaaaatcctagcattcctttccttccaaattgaccaaatcgccacatgccaaatcaac |
37484963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 64 - 249
Target Start/End: Original strand, 32774124 - 32774309
Alignment:
| Q |
64 |
ccattcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaac |
163 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32774124 |
ccattcatcttctatttaggcactctctaggattccaagtccactcataaaagaggaatgaggctatctttaatctactcaacgtccaaacccaagaaac |
32774223 |
T |
|
| Q |
164 |
cgcttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaa |
249 |
Q |
| |
|
|||||| ||||||||||||| ||||| || |||||| || ||| || || ||||| |||||||||||| |||||||| |||||| |
|
|
| T |
32774224 |
cgctttgatctcatccactaaatcctcaacctccttcgtttggttgttgaagatccttgcatttctttccttccaaatcaaccaaa |
32774309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 19586677 - 19586741
Alignment:
| Q |
210 |
ttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaa |
274 |
Q |
| |
|
||||| ||||| |||||||||||| |||||||| ||||||| ||||| ||||||| ||||||||| |
|
|
| T |
19586677 |
ttaaagatccttgcatttctttccttccaaatcaaccaaatcgttgcgtgccaaaccaaccaaaa |
19586741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 24722631 - 24722559
Alignment:
| Q |
210 |
ttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttct |
282 |
Q |
| |
|
||||||||||| | |||||||||| |||||||| |||||| || |||||||||| |||| |||| |||||| |
|
|
| T |
24722631 |
ttaaaaatcctcgaatttctttccttccaaatcatccaaatagtggcatgccaaaccaacataaaagctttct |
24722559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 59 - 340
Target Start/End: Original strand, 42460093 - 42460374
Alignment:
| Q |
59 |
cagcaccattcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaa |
158 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||| |||||||||||| ||||||||||||| || || | |||||||| || |||| |||| |||||| |
|
|
| T |
42460093 |
cagcacctttcatcttctatttaggcactctctaggattccaagtctactcataaaagaggaacgatgctatctttagcctgctcagtatccacacccaa |
42460192 |
T |
|
| Q |
159 |
gaaaccgcttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcat |
258 |
Q |
| |
|
|| |||||||| ||||||||||||| ||| | || |||||| |||| | || ||||||| |||||||||||| |||||||| ||||||| || |||| |
|
|
| T |
42460193 |
gacaccgctttaatctcatccactaactccccaacatccttctctttttgattgaaaatccgggcatttctttccttccaaatcaaccaaatagtggcat |
42460292 |
T |
|
| Q |
259 |
gccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatg |
340 |
Q |
| |
|
||||||||||| ||||||||||| || |||| | |||| ||| ||| |||||||||| ||||| || |||||||| ||||| |
|
|
| T |
42460293 |
gccaaatcaacaaaaaacctttcctaatccttctcgagaccacctcattattccaacactcaaaatgcgcaaacaaattatg |
42460374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 31234771 - 31234861
Alignment:
| Q |
93 |
ggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccacta |
183 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| | |||||| || ||||||||| ||||||||||||||| |||||| || |||| ||||| |
|
|
| T |
31234771 |
ggattccaagtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcacta |
31234861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 84 - 361
Target Start/End: Complemental strand, 36989097 - 36988820
Alignment:
| Q |
84 |
cactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccacta |
183 |
Q |
| |
|
|||||||| |||||||| ||||||| ||| ||||| ||||| | |||||| || ||||||||| ||||||||||||||||||||| || || | ||||| |
|
|
| T |
36989097 |
cactctctaggattccacgtccacttatagaagaggaaagaagctatcttcaacctactcaacaaccaaacccaagaaaccgctttgatttcgttcacta |
36988998 |
T |
|
| Q |
184 |
gttcctctacttccttcactttg-ttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttct |
282 |
Q |
| |
|
|||||| || | |||| ||| | || ||||||||||| |||||||||||| |||||||| ||||||| || |||||||||||||||||||| ||||| | |
|
|
| T |
36988997 |
tttcctccacattcttc-cttagattattaaaaatcctcgcatttctttccttccaaatcaaccaaatagtagcatgccaaatcaaccaaaaccctttat |
36988899 |
T |
|
| Q |
283 |
tatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaatcaatctc |
361 |
Q |
| |
|
|| |||| || | | |||||||||||||||||| ||||| || |||| | |||||||||||| || |||| |||||| |
|
|
| T |
36988898 |
taagcctcttcggcatcacttcactattccaacaatcaaaatggacaaaaaggttatgtggagtgataaaattaatctc |
36988820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 346
Target Start/End: Complemental strand, 2282328 - 2282048
Alignment:
| Q |
67 |
ttcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgc |
166 |
Q |
| |
|
||||||||||||| | ||| || || || ||| ||||||| ||||| ||||| || || | | |||||||||||||||| | ||| |||||||||||||| |
|
|
| T |
2282328 |
ttcatcttctatttaggcattccctagggttctaagtccattcatagaagaggaacgatgctttctttaatctactcaatgaccacacccaagaaaccgc |
2282229 |
T |
|
| Q |
167 |
ttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatc |
266 |
Q |
| |
|
||| ||||||||||||| | || || |||||||||| || || |||||||| |||| ||||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
2282228 |
tttaatctcatccactaaattatcaacacccttcactttattgttgaaaatcctttcattgctttctttccaaattaaccaaattgtgacatgccaaatc |
2282129 |
T |
|
| Q |
267 |
aac-caaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagt |
346 |
Q |
| |
|
||| ||||||||||| |||||||| || | | || ||| ||||| |||| |||||||| ||||||| ||||| ||||| |
|
|
| T |
2282128 |
aacaaaaaaacctttcctatgccttctaaaaacaacctcattattctaacaatcaaattgcacaaacaaattatgaggagt |
2282048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 16989665 - 16989575
Alignment:
| Q |
93 |
ggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccacta |
183 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||| | |||||| || ||||||||| ||||||||||||||| |||||| || |||| ||||| |
|
|
| T |
16989665 |
ggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcacta |
16989575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 4913493 - 4913567
Alignment:
| Q |
207 |
ttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttc |
281 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||| |||||||| ||||||||||||| | ||||| ||||| |
|
|
| T |
4913493 |
ttcttaaaaatcctcgcatttctttccttccaaatcatccaaattgaggcatgccaaatcatcaaaaaagctttc |
4913567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 43441460 - 43441534
Alignment:
| Q |
207 |
ttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttc |
281 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||| |||||||| ||||||||||||| | ||||| ||||| |
|
|
| T |
43441460 |
ttcttaaaaatcctcgcgtttctttccttccaaatcatccaaattgaggcatgccaaatcatcaaaaaagctttc |
43441534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 22904704 - 22904778
Alignment:
| Q |
207 |
ttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttc |
281 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| |||||| | ||||| ||||||| | ||||| ||||| |
|
|
| T |
22904704 |
ttcttaaaaatcctcgcgtttctttccatccaaatcatccaaatagaggcatgtcaaatcatcaaaaaagctttc |
22904778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 22956372 - 22956446
Alignment:
| Q |
207 |
ttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttc |
281 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| |||||| | ||||| ||||||| | ||||| ||||| |
|
|
| T |
22956372 |
ttcttaaaaatcctcgcgtttctttccatccaaatcatccaaatagaggcatgtcaaatcatcaaaaaagctttc |
22956446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 4913370 - 4913431
Alignment:
| Q |
84 |
cactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaa |
145 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| |||| | |||| | ||||||||||| |
|
|
| T |
4913370 |
cactctctcggattccaacaccactcgtaaaagagacaagaagctatcctcaatctactcaa |
4913431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 357 - 414
Target Start/End: Complemental strand, 34899975 - 34899918
Alignment:
| Q |
357 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctc |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctc |
34899918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 53553627 - 53553728
Alignment:
| Q |
45 |
agcagatccaaaaa-cagcaccattcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactc |
143 |
Q |
| |
|
|||||||||||||| |||| || ||||||| ||||| | ||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
53553627 |
agcagatccaaaaaacagcgcctttcatctcctatttaggcactctctaggattccaagtccactcataaaagaggaaagaagctatctttaatctactc |
53553726 |
T |
|
| Q |
144 |
aa |
145 |
Q |
| |
|
|| |
|
|
| T |
53553727 |
aa |
53553728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 1259319 - 1259409
Alignment:
| Q |
93 |
ggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccacta |
183 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||| | |||||| || ||||||||| ||||||||||||||| |||||| || |||| ||||| |
|
|
| T |
1259319 |
ggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcacta |
1259409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 37242607 - 37242697
Alignment:
| Q |
93 |
ggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccacta |
183 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||| | |||||| || ||||||||| ||||||||||||||| |||||| || |||| ||||| |
|
|
| T |
37242607 |
ggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcacta |
37242697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 51042223 - 51042152
Alignment:
| Q |
210 |
ttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttc |
281 |
Q |
| |
|
||||| ||||| |||||||||||| |||||||| |||||||| ||| |||||||||||||| || |||||| |
|
|
| T |
51042223 |
ttaaagatccttgcatttctttccttccaaatcatccaaattgatgcgtgccaaatcaaccacaaccctttc |
51042152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0760 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 1722 - 1815
Alignment:
| Q |
67 |
ttcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaaga |
160 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||||||||||||||||||| || || | |||||| | |||||||||| ||||| |||||| |
|
|
| T |
1722 |
ttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaaga |
1815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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