View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2672_low_5 (Length: 362)
Name: NF2672_low_5
Description: NF2672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2672_low_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 192 - 362
Target Start/End: Complemental strand, 42187110 - 42186940
Alignment:
| Q |
192 |
tatgaattatgatgataatacctccgaattgcaagaatttaaaattgctggatcatataactatatggcgttggcatcttgactattatcttttccacct |
291 |
Q |
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| T |
42187110 |
tatgaattatgatgataatacctccgaattgcaagaatttaaaattgctggatcatataactatatggcgttggcatcttgactattatctcttccacct |
42187011 |
T |
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| Q |
292 |
tttgaagaacaccatcaaatcctttgataaggtttgtcagatcttgtacttacttctagtatgagaaactc |
362 |
Q |
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| T |
42187010 |
tttgaagaactccatcaaatcctttgataaggtttgtcagatcttgtacttacttctagtatgagaaactc |
42186940 |
T |
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Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 42189943 - 42189770
Alignment:
| Q |
18 |
ataatctatgtatgtacgtacctggtgtgtgaaaggaccattaatttggagtatgaaggacaaccttt-----gatacagaaccgctcacagaaattatg |
112 |
Q |
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| T |
42189943 |
ataatctatgtatgtacgtacctggtgtgtgaaaggaccatt----tggagtatgaaggacaacctttaatttgatacagaaccgctcacagaaattatg |
42189848 |
T |
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| Q |
113 |
ctaacagatcaacgatgagatgcattagatagttcatatatagagttcatcacatcctgcaaaataattaattccaaa |
190 |
Q |
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| T |
42189847 |
caaacagatcaacgatgagatgcattagatagttcatatatagagttcatcacatcctgcaaaaaaattaattccaaa |
42189770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 19533345 - 19533511
Alignment:
| Q |
18 |
ataatctatgtatgtacgtacctggtgtgtgaaaggaccattaatttggagtatgaaggacaacctttgatacagaaccgctcacagaaattatgctaac |
117 |
Q |
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| T |
19533345 |
ataatttatgtatgtacgtacctgttgtgtgaaaggaccatt----tggagtacgaaggacgacctttga--cagaaacgctcatagaaattatgcaaac |
19533438 |
T |
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| Q |
118 |
agatcaacgatgagatgcattagatagttcatatatagagttcatcacatcctgcaaaataattaattccaaa |
190 |
Q |
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| T |
19533439 |
agatcgacgatgagatgccttagatagttcatatatagagttcatcaaatcctgcaaaagaattaattccaaa |
19533511 |
T |
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