View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2673_high_12 (Length: 495)

Name: NF2673_high_12
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2673_high_12
NF2673_high_12
[»] chr4 (36 HSPs)
chr4 (97-478)||(34030545-34030926)
chr4 (11-94)||(33703141-33703224)
chr4 (11-94)||(1771283-1771366)
chr4 (11-94)||(27864564-27864647)
chr4 (11-94)||(28982839-28982922)
chr4 (11-104)||(17619169-17619262)
chr4 (11-95)||(35017732-35017815)
chr4 (11-94)||(23035980-23036063)
chr4 (11-94)||(25051693-25051776)
chr4 (12-95)||(27316731-27316814)
chr4 (11-94)||(48463467-48463550)
chr4 (11-100)||(39631094-39631184)
chr4 (11-92)||(43949818-43949900)
chr4 (11-92)||(27893859-27893940)
chr4 (14-94)||(27550309-27550389)
chr4 (14-97)||(12496953-12497036)
chr4 (11-94)||(55966363-55966446)
chr4 (11-92)||(3756263-3756344)
chr4 (11-92)||(43514703-43514784)
chr4 (11-99)||(32728352-32728440)
chr4 (11-94)||(711960-712043)
chr4 (12-94)||(28988473-28988555)
chr4 (11-93)||(41878407-41878489)
chr4 (11-96)||(55272393-55272478)
chr4 (11-91)||(23204795-23204875)
chr4 (11-95)||(45490330-45490414)
chr4 (11-94)||(48435596-48435679)
chr4 (11-92)||(31680904-31680985)
chr4 (11-92)||(35037007-35037088)
chr4 (11-92)||(43735744-43735825)
chr4 (14-94)||(960890-960970)
chr4 (12-94)||(21687006-21687088)
chr4 (14-52)||(51512285-51512323)
chr4 (37-94)||(46827749-46827806)
chr4 (14-99)||(49229684-49229769)
chr4 (66-94)||(30189273-30189301)
[»] chr3 (28 HSPs)
chr3 (97-478)||(21390011-21390392)
chr3 (11-95)||(42100687-42100771)
chr3 (11-94)||(40808865-40808948)
chr3 (11-94)||(46941053-46941136)
chr3 (11-94)||(25413681-25413764)
chr3 (11-94)||(53273701-53273784)
chr3 (11-94)||(54246165-54246248)
chr3 (11-93)||(54237097-54237179)
chr3 (11-99)||(42394436-42394524)
chr3 (11-95)||(45126945-45127029)
chr3 (11-94)||(24688419-24688502)
chr3 (11-94)||(47191043-47191125)
chr3 (11-92)||(27748565-27748646)
chr3 (11-95)||(36150129-36150213)
chr3 (11-94)||(4190282-4190365)
chr3 (11-94)||(9434124-9434207)
chr3 (11-94)||(10457909-10457992)
chr3 (11-94)||(25996268-25996351)
chr3 (11-93)||(40480750-40480832)
chr3 (11-92)||(1078229-1078309)
chr3 (11-95)||(34791828-34791912)
chr3 (11-100)||(51757587-51757676)
chr3 (11-92)||(53581875-53581956)
chr3 (11-90)||(29558251-29558330)
chr3 (11-94)||(52627994-52628077)
chr3 (11-52)||(52629870-52629911)
chr3 (27-94)||(11064755-11064820)
chr3 (59-95)||(52629839-52629875)
[»] chr5 (15 HSPs)
chr5 (97-478)||(1397835-1398216)
chr5 (11-95)||(2614666-2614750)
chr5 (11-95)||(22512304-22512388)
chr5 (11-94)||(18033982-18034065)
chr5 (11-94)||(33801469-33801552)
chr5 (11-94)||(41334680-41334763)
chr5 (11-97)||(32473411-32473497)
chr5 (11-94)||(7617133-7617216)
chr5 (11-92)||(5256997-5257078)
chr5 (12-100)||(25915006-25915093)
chr5 (19-94)||(33855068-33855143)
chr5 (11-94)||(17208074-17208157)
chr5 (11-94)||(38470579-38470662)
chr5 (11-94)||(30622736-30622818)
chr5 (11-86)||(39122450-39122524)
[»] chr6 (19 HSPs)
chr6 (97-466)||(32465139-32465508)
chr6 (11-94)||(7273352-7273435)
chr6 (11-92)||(24204004-24204085)
chr6 (11-94)||(26670026-26670109)
chr6 (11-95)||(13743238-13743322)
chr6 (11-95)||(13748738-13748822)
chr6 (11-94)||(7292747-7292830)
chr6 (11-94)||(7367549-7367632)
chr6 (11-94)||(9698350-9698433)
chr6 (11-94)||(33242403-33242486)
chr6 (11-94)||(26466799-26466882)
chr6 (11-96)||(30014341-30014426)
chr6 (11-92)||(30735984-30736065)
chr6 (11-95)||(33253912-33253996)
chr6 (11-94)||(3213400-3213483)
chr6 (11-92)||(27441544-27441625)
chr6 (11-94)||(21279929-21280012)
chr6 (11-94)||(21293694-21293777)
chr6 (27-94)||(31109255-31109322)
[»] chr1 (24 HSPs)
chr1 (11-99)||(43571103-43571191)
chr1 (11-94)||(5489776-5489859)
chr1 (11-100)||(35003288-35003377)
chr1 (11-95)||(38335917-38336001)
chr1 (11-95)||(48119627-48119711)
chr1 (11-94)||(44112677-44112760)
chr1 (11-94)||(48498979-48499062)
chr1 (11-92)||(4401329-4401411)
chr1 (14-99)||(50448280-50448365)
chr1 (18-94)||(24769523-24769599)
chr1 (11-94)||(37814778-37814861)
chr1 (11-92)||(2497579-2497660)
chr1 (11-100)||(41065147-41065236)
chr1 (11-94)||(45427762-45427845)
chr1 (12-94)||(750323-750405)
chr1 (11-100)||(7447820-7447908)
chr1 (11-94)||(38113212-38113295)
chr1 (11-94)||(45639749-45639832)
chr1 (11-94)||(46168383-46168466)
chr1 (13-94)||(26585462-26585543)
chr1 (11-94)||(23989540-23989624)
chr1 (37-94)||(14427347-14427404)
chr1 (27-95)||(35000146-35000214)
chr1 (11-52)||(4888085-4888126)
[»] scaffold0119 (1 HSPs)
scaffold0119 (11-94)||(685-768)
[»] chr2 (26 HSPs)
chr2 (11-94)||(30838632-30838715)
chr2 (11-95)||(1750413-1750497)
chr2 (11-94)||(43335780-43335863)
chr2 (11-94)||(12302270-12302353)
chr2 (11-95)||(16096746-16096830)
chr2 (11-99)||(19047152-19047240)
chr2 (11-94)||(4764743-4764826)
chr2 (15-92)||(33229303-33229381)
chr2 (11-95)||(12415477-12415561)
chr2 (11-95)||(12427537-12427621)
chr2 (12-92)||(43490419-43490499)
chr2 (11-94)||(43114557-43114640)
chr2 (11-92)||(11825671-11825752)
chr2 (11-92)||(41281991-41282072)
chr2 (11-94)||(16803968-16804051)
chr2 (11-94)||(16843250-16843333)
chr2 (11-94)||(34895758-34895841)
chr2 (11-92)||(6518486-6518566)
chr2 (11-95)||(13780752-13780836)
chr2 (11-94)||(966851-966934)
chr2 (11-94)||(18491705-18491788)
chr2 (11-93)||(34817793-34817875)
chr2 (11-52)||(42849875-42849916)
chr2 (12-100)||(14285670-14285758)
chr2 (59-95)||(42849911-42849947)
chr2 (11-64)||(4451967-4452020)
[»] chr8 (26 HSPs)
chr8 (11-92)||(42295197-42295278)
chr8 (11-103)||(42197452-42197544)
chr8 (11-95)||(11582765-11582849)
chr8 (11-95)||(29705361-29705445)
chr8 (11-94)||(36743500-36743583)
chr8 (12-94)||(2165981-2166063)
chr8 (11-92)||(29800967-29801048)
chr8 (246-436)||(15244209-15244390)
chr8 (11-94)||(2546996-2547079)
chr8 (11-94)||(5754903-5754986)
chr8 (11-93)||(45397317-45397399)
chr8 (11-100)||(18066735-18066824)
chr8 (11-92)||(30912579-30912660)
chr8 (11-92)||(42699259-42699340)
chr8 (14-94)||(30660762-30660842)
chr8 (11-94)||(35181516-35181599)
chr8 (11-96)||(1375540-1375625)
chr8 (11-86)||(31384672-31384747)
chr8 (11-94)||(34304788-34304871)
chr8 (11-92)||(20148762-20148843)
chr8 (11-92)||(26125637-26125718)
chr8 (11-92)||(33630010-33630091)
chr8 (11-94)||(16603643-16603726)
chr8 (100-161)||(15244044-15244105)
chr8 (58-95)||(28977145-28977182)
chr8 (11-52)||(9241594-9241635)
[»] chr7 (29 HSPs)
chr7 (11-94)||(35069721-35069804)
chr7 (11-98)||(42538448-42538535)
chr7 (11-97)||(44416951-44417037)
chr7 (11-92)||(43343641-43343722)
chr7 (11-95)||(24001029-24001113)
chr7 (11-100)||(5810941-5811030)
chr7 (11-100)||(5194248-5194337)
chr7 (11-94)||(5015395-5015478)
chr7 (11-94)||(42972852-42972935)
chr7 (11-92)||(4638216-4638297)
chr7 (11-92)||(10573751-10573832)
chr7 (14-91)||(26898422-26898499)
chr7 (11-95)||(45326019-45326103)
chr7 (11-94)||(9216302-9216384)
chr7 (11-94)||(40236919-40237002)
chr7 (11-94)||(43317443-43317526)
chr7 (11-97)||(31513284-31513370)
chr7 (27-96)||(39998406-39998475)
chr7 (11-92)||(44326180-44326261)
chr7 (11-78)||(27393277-27393344)
chr7 (14-85)||(32029837-32029908)
chr7 (11-92)||(16180374-16180454)
chr7 (11-56)||(38160596-38160641)
chr7 (11-93)||(31408650-31408732)
chr7 (11-94)||(41861674-41861759)
chr7 (11-94)||(33384870-33384954)
chr7 (11-94)||(24280613-24280696)
chr7 (11-94)||(27535248-27535331)
chr7 (61-94)||(38160661-38160694)
[»] scaffold0038 (1 HSPs)
scaffold0038 (11-99)||(112650-112738)
[»] scaffold0187 (2 HSPs)
scaffold0187 (11-94)||(14205-14288)
scaffold0187 (11-94)||(24533-24616)
[»] scaffold0385 (1 HSPs)
scaffold0385 (11-94)||(11251-11334)
[»] scaffold0157 (1 HSPs)
scaffold0157 (14-97)||(23441-23524)
[»] scaffold0100 (1 HSPs)
scaffold0100 (11-97)||(35473-35559)
[»] scaffold0003 (1 HSPs)
scaffold0003 (11-92)||(45736-45817)


Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 97 - 478
Target Start/End: Original strand, 34030545 - 34030926
Alignment:
Q  97 aaaagaaaccagttcacgtctctatccctcagattcactctctcaccatggaaacttcacaaaccataaaaatttcagctgcgcaatcgatttgtcatcc 196  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34030545 aaaagaaaccagttcacgtctctccccctcagattcactctctcaccatggaaacttcacaaaccataaaaatttcagctgcgcagtcgatttgtcatcc 34030644  T
Q  197 gttcgtctcgttttccatcatcgtgtcactcgtgttcttcattgactcgtcttcttccatcaatttctattatattccatttttaatttctgctttaata 296  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  34030645 gttcgtctcgttttccatcatcatgtcactcatgttcttcattgactcgtcttcttccatccatttctattatattccatttttaatttctactttaata 34030744  T
Q  297 ttactcaagttgtgctgaaaaatattatgtctatgttgctggtttatgtatttaatgggatctaatgcatattattttaatcaatatttggagtatgtgg 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34030745 ttactcaagttgtgctgaaaaatattatgtctatgttgctggtttatgtatttaatgggatctaatgcatattattttaatcaatatttggagtatgtgg 34030844  T
Q  397 ttaaaaggatttatttgattatgttaaattgatttttgaagctgcaacgtctgttgttaatgttcataagcttattcatttt 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34030845 ttaaaaggatttatttgattatgttaaattgatttttgaagctgcaacgtctgttgttaatgttcataagcttattcatttt 34030926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 33703224 - 33703141
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  33703224 gtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 33703141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 1771283 - 1771366
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||    
T  1771283 gtgagatgaacttatcaaaatatctctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1771366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 27864647 - 27864564
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  | |||| |||||||||||||| ||||||||||||||    
T  27864647 gtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacattttcc 27864564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 28982839 - 28982922
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||||||| ||||||| |||||| |||||||||||||||||||||    
T  28982839 gtgagatgaacttaccaaaatatccctaatatatgggatgtacaatagggtgtagaaataaagggtgttcatgtaacattttcc 28982922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 17619169 - 17619262
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaagaaa 104  Q
    |||||||||| |||| ||||||||| |||| |||||||||||||||| |||||| || |||| |||||||||||||||||||||| ||||||||    
T  17619169 gtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttccataaaagaaa 17619262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 35017815 - 35017732
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||| || | |||||||||| ||||||||||||||||||||||    
T  35017815 gtgagatgaacttaccaaaatatcccta-tacatggggtgtacaatgagatataggaataaagggtgttcatgtaacattttcca 35017732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 23036063 - 23035980
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||| || |||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  23036063 gtgagatgaacttacaaaaatatccctaatatatagggtgtacaatagggtgtaggaataaaggaggttcatgtaacattttcc 23035980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 25051776 - 25051693
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||  ||||||||||||||  |||||||||| |||||||||    
T  25051776 gtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagtgtgttcatgtgacattttcc 25051693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 27316731 - 27316814
Alignment:
Q  12 tgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    |||||||||||||| ||||||||| |||||||||||||||| ||| ||||||||||||||| ||||||| | ||||||||||||    
T  27316731 tgagatgaacttaccaaaatatccttaatacatggggtgtataatgaggtgtaggaataaagggtgttcgtttaacattttcca 27316814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 48463467 - 48463550
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||| |  |||| |||||||||||||| ||||||||||||||    
T  48463467 gtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaaatgtatgaataaatggtgtttatgtaacattttcc 48463550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 39631184 - 39631094
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaat-aaatggtgttcatgtaacattttccaaaaaa 100  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||| ||| || ||||||||| |||||| |||||||    
T  39631184 gtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaaagggggttcatgtatcatttttcaaaaaa 39631094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 43949818 - 43949900
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaat-aaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| ||| |||||||||||| ||||||    
T  43949818 gtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgcaggaataaaagggtgttcatgtatcatttt 43949900  T

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Target: chr4; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 27893859 - 27893940
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||  | |||| |||||||||||||| ||||||||||||    
T  27893859 gtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 27893940  T

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Target: chr4; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 27550389 - 27550309
Alignment:
Q  14 agatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||||| ||||||||||||||||||| ||||||||||   |||||| |||||| |||||||||||||||||||||    
T  27550389 agatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 27550309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 12497036 - 12496953
Alignment:
Q  14 agatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaa 97  Q
    |||||||||||| |||||||| |||||||||||| ||||||||   ||||||||||||| ||||||||| ||||||||||||||    
T  12497036 agatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttccaaa 12496953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 55966363 - 55966446
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||  | |||| ||||||| |||||| ||||||||||||||    
T  55966363 gtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 55966446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 3756263 - 3756344
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||| || |||||||||||||| |||| |||||||||||||||| |||||| || |||| |||||||||||||||||||    
T  3756263 gtgagataaatttactaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 3756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 43514703 - 43514784
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||| |||||| ||||||||||||  |||||||||   ||||||||||||| |||||||||||||||||||    
T  43514703 gtgagatgaacttaccaaaataaccctaatacatgaagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 43514784  T

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Target: chr4; HSP #20
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 32728440 - 32728352
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaa 99  Q
    |||||||||| |||||||||| ||| |||| |||||||||||||||| |||||| || |||| | ||||||||||||||||||| ||||    
T  32728440 gtgagatgaatttactaaaatgtccttaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcctaaaa 32728352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 712043 - 711960
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||||||| |||| ||| |||||||||||| |||||| || |||| |||||||||||||||||||||    
T  712043 gtgagatgaatttaccaaaatatccttaatgcatagggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 711960  T

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Target: chr4; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 28988555 - 28988473
Alignment:
Q  12 tgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||| |||  ||||| |||||| | ||||||||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  28988555 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacattttcc 28988473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 41878489 - 41878407
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttc 93  Q
    ||||||||||||||  ||||||||||||||  || ||||||||||| ||||||| |||||||  |||||||||||||||||||    
T  41878489 gtgagatgaacttatcaaaatatccctaatggatagggtgtacaatgaggtgtatgaataaagagtgttcatgtaacattttc 41878407  T

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Target: chr4; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 55272393 - 55272478
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaa 96  Q
    |||||||||| |||| ||||||||| |||| ||||||||||||||||  ||||| || |||| | |||||||||||||||||||||    
T  55272393 gtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatgattaaaggatgttcatgtaacattttccaa 55272478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 23204795 - 23204875
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattt 91  Q
    |||| |||||||||| |||||||||||||||||| || ||||||||  | ||||||||||||  |||||||||||||||||    
T  23204795 gtgacatgaacttacaaaaatatccctaatacataggatgtacaatgggatgtaggaataaagagtgttcatgtaacattt 23204875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 45490330 - 45490414
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    |||||||||| |||||||| ||||||||||||||| ||||||||||  | ||||  ||||||  |||||||||||||||||||||    
T  45490330 gtgagatgaatttactaaagtatccctaatacatgaggtgtacaattggatgtataaataaaatgtgttcatgtaacattttcca 45490414  T

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Target: chr4; HSP #27
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 48435596 - 48435679
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| || || |||||||| |||||||||||||||| |||||  || |||||||||||||||||||| |||||    
T  48435596 gtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactttcc 48435679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 31680985 - 31680904
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||| ||||||||||||||| | ||||||||||||    |||| |||||||||||||| | ||||||||||    
T  31680985 gtgagatgaacttaccaaaatatccctaatatacggggtgtacaatggaatgtatgaataaatggtgtttacgtaacatttt 31680904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 35037088 - 35037007
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    |||||||||| |||| ||||||||| |||| ||||||||||||||||  ||||| |  |||| |||| ||||||||||||||    
T  35037088 gtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatggttaaagggtgctcatgtaacatttt 35037007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 43735825 - 43735744
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||  |||||||| |||||||||||  |||| ||| || |||||||||||| | ||||||||||| |||||    
T  43735825 gtgagatgaacttatcaaaatatctctaatacatggaatgtataatgagatgtaggaataaaggatgttcatgtaatatttt 43735744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 960890 - 960970
Alignment:
Q  14 agatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||| |||| ||||| ||||||||  || ||||||||||||  ||||| || |||| |||||||||||||||||||||    
T  960890 agatgaatttaccaaaatgtccctaatgtatagggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 960970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 21687088 - 21687006
Alignment:
Q  12 tgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||||||||||  |||||||||  | |||| |||  ||||||  |||||| | |||||||||||||||||||    
T  21687088 tgagatgaacttactaaaatatttctaatacataagatgtataatggggtgtaaaaataaaggatgttcatgtaacattttcc 21687006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 51512285 - 51512323
Alignment:
Q  14 agatgaacttactaaaatatccctaatacatggggtgta 52  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  51512285 agatgaacttaccaaaatatctctaatacatggggtgta 51512323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 46827749 - 46827806
Alignment:
Q  37 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||| ||| ||||||||||||  ||||| || |||| |||||||||||||||||||||    
T  46827749 taatgcattgggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 46827806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 49229684 - 49229769
Alignment:
Q  14 agatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaa 99  Q
    ||||||| |||| | ||||||| |||| ||||  |||||||||| |||||| || |||| | ||||||| ||||||||||| ||||    
T  49229684 agatgaatttaccagaatatccttaatgcatgaagtgtacaatagggtgtatgattaaaggatgttcatataacattttcctaaaa 49229769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 94
Target Start/End: Complemental strand, 30189301 - 30189273
Alignment:
Q  66 gaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||||||||||||||||||||||    
T  30189301 gaataaatggtgttcatgtaacattttcc 30189273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 97 - 478
Target Start/End: Original strand, 21390011 - 21390392
Alignment:
Q  97 aaaagaaaccagttcacgtctctatccctcagattcactctctcaccatggaaacttcacaaaccataaaaatttcagctgcgcaatcgatttgtcatcc 196  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  21390011 aaaagaaaccagttcacgtctctctccctcagattcactctctcaccatggaaacttcacaaaccataaaaatttcagctgcgcagtcgatttttcatcc 21390110  T
Q  197 gttcgtctcgttttccatcatcgtgtcactcgtgttcttcattgactcgtcttcttccatcaatttctattatattccatttttaatttctgctttaata 296  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21390111 gttcgtctcgttttccgtcatcgtgtaactcgtgttcttcattgactcgtcttcttccatccatttctattatattccatttttaatttctgctttaata 21390210  T
Q  297 ttactcaagttgtgctgaaaaatattatgtctatgttgctggtttatgtatttaatgggatctaatgcatattattttaatcaatatttggagtatgtgg 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21390211 ttactcaagttgtgctgaaaaatattatgtctatgttgctggtttatgtatttattgggatctaatgcatattattttaatcaatatttggagtatgtgg 21390310  T
Q  397 ttaaaaggatttatttgattatgttaaattgatttttgaagctgcaacgtctgttgttaatgttcataagcttattcatttt 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21390311 ttaaaaggatttatttgattatgttaaattgatttttgaagctgcaacgtctgttgttaatgttcataagtttattcatttt 21390392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 42100771 - 42100687
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  42100771 gtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcca 42100687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 40808948 - 40808865
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||    
T  40808948 gtgagatgaacttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaatggtgttgatgtaacattttcc 40808865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 46941136 - 46941053
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||    
T  46941136 gtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacattttcc 46941053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 25413764 - 25413681
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||  |||||||||||||| |||||||||||||||||||||    
T  25413764 gtgagatgaacttacaaaaatatccctaatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 25413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 53273701 - 53273784
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||| |||||||||||    
T  53273701 gtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtataggaataaatgatgttcatataacattttcc 53273784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 54246165 - 54246248
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| |||||||| ||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||    
T  54246165 gtgagatgaacttacaaaaatatctctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 54246248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 54237179 - 54237097
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttc 93  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||  | |||||||||||| ||||||||||||||||||||    
T  54237179 gtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttc 54237097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 42394436 - 42394524
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaa 99  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||    |||||||||||| |||||||||||||||||||| |||||    
T  42394436 gtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttctaaaaa 42394524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 45126945 - 45127029
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  | |||| ||||||| |||||| |||||||||||||||    
T  45126945 gtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacattttcca 45127029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 24688419 - 24688502
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||   |||||| |||||| |||||||||||||||||||||    
T  24688419 gtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 24688502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 47191043 - 47191125
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||  |||||||| |||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||    
T  47191043 gtgagatgaacttatcaaaatatctctaatacatggg-tgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 47191125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 27748646 - 27748565
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||| ||||||||||||||||||  |||||| ||| ||||||| ||||||| |||||||||||||||||||    
T  27748646 gtgagatgaacttaccaaaatatccctaatacataaggtgtataatgaggtgtatgaataaaaggtgttcatgtaacatttt 27748565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 36150213 - 36150129
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||||||||||||| ||||||||||| |||||| ||||||| |||  |||||| ||||||| ||| ||||||||||||||||||    
T  36150213 gtgagatgaacttaccaaaatatccctgatacatagggtgtataatggggtgtatgaataaagggtattcatgtaacattttcca 36150129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 4190282 - 4190365
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| |||||||| |||||||||  ||||||||||| |||||| || |||| |||||||||||||||||||||    
T  4190282 gtgagatgaatttaccaaaatatctctaatacataaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 4190365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 9434207 - 9434124
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||| |||||||| ||||||||||||||||  ||||| || |||| |||||||||||||||||||||    
T  9434207 gtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 9434124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 10457909 - 10457992
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||| || |||| ||||||||| |||| |||||||||||||||| |||||| || |||| |||||||||||||||||||||    
T  10457909 gtgagataaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttcc 10457992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 25996351 - 25996268
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||| ||| ||||| ||||||||||||||||| |||| || |||| |||||||||||||||||||||    
T  25996351 gtgagatgaatttaccaaaatgtccttaatatatggggtgtacaataagatgtatgattaaagggtgttcatgtaacattttcc 25996268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 40480832 - 40480750
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttc 93  Q
    ||||||||||||||| |||||||||||||||||| || ||||||||  ||  || ||||||| ||||||||||||||||||||    
T  40480832 gtgagatgaacttaccaaaatatccctaatacataggatgtacaatggggcatatgaataaagggtgttcatgtaacattttc 40480750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 1078309 - 1078229
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||| ||| ||||||||| ||||||||  |||||||||| ||||| ||||||||| |||||||||||||||||||    
T  1078309 gtgagatgaacctacaaaaatatcc-taatacattaggtgtacaatgaggtgcaggaataaagggtgttcatgtaacatttt 1078229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 34791912 - 34791828
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    |||||||||| ||| |||||| |||||||| |||| ||| ||||||| |||||| || |||| ||||||||||||||||||||||    
T  34791912 gtgagatgaaattattaaaatgtccctaatgcatgaggtttacaatatggtgtatgattaaagggtgttcatgtaacattttcca 34791828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 51757676 - 51757587
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaa 100  Q
    |||||||||| |||||||||| ||| |||| |||| ||||||||||| |||||| || |||| |||||| |||||| |||||||| ||||    
T  51757676 gtgagatgaaattactaaaatgtccataatgcatgaggtgtacaatagggtgtatgattaaagggtgtttatgtaatattttccataaaa 51757587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 53581875 - 53581956
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||  |||||||||||||||||| || ||||||||   ||||| |||||||  ||||||||||||||||||    
T  53581875 gtgagatgaacttatcaaaatatccctaatacataggatgtacaatggagtgtatgaataaagagtgttcatgtaacatttt 53581956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 29558251 - 29558330
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatt 90  Q
    |||||||||| |||| || |||| ||||||| || ||||||||||| || |||| ||||||| ||||||||| |||||||    
T  29558251 gtgagatgaatttaccaatatattcctaatatatagggtgtacaatgagatgtatgaataaagggtgttcatataacatt 29558330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 52627994 - 52628077
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||||| | |||| |||| ||||||||||| | |||| || |||| |||||||| ||||||||||||    
T  52627994 gtgagatgaatttaccaaaatatacttaatgcatgaggtgtacaataggatgtatgattaaagggtgttcacgtaacattttcc 52628077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 52629911 - 52629870
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgta 52  Q
    ||||||||||||||| ||||||||| |||||||| |||||||    
T  52629911 gtgagatgaacttacaaaaatatccttaatacatagggtgta 52629870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 11064755 - 11064820
Alignment:
Q  27 aaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||| ||||  ||| ||||||||||| ||||||| ||||||||| ||||||  |||||||||||    
T  11064755 aaaatatctctaaagcatagggtgtacaatgaggtgtatgaataaatgatgttca--taacattttcc 11064820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 52629875 - 52629839
Alignment:
Q  59 ggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  52629875 ggtgtaggaataaaaggtgttcatgtaatattttcca 52629839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 97 - 478
Target Start/End: Complemental strand, 1398216 - 1397835
Alignment:
Q  97 aaaagaaaccagttcacgtctctatccctcagattcactctctcaccatggaaacttcacaaaccataaaaatttcagctgcgcaatcgatttgtcatcc 196  Q
    |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||     
T  1398216 aaaagaaaccagttcatgtctctctccctcatattcactctctcaccatggaaactttacaaaccataaaaatttcagctgcgcagtcgatttgtcatct 1398117  T
Q  197 gttcgtctcgttttccatcatcgtgtcactcgtgttcttcattgactcgtcttcttccatcaatttctattatattccatttttaatttctgctttaata 296  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1398116 gttcgtctcgttttccgtcatcgtgtaactcgtgttcttcattgactcgtcttcttccatccatttctattatattccatttttaatttctgctttaata 1398017  T
Q  297 ttactcaagttgtgctgaaaaatattatgtctatgttgctggtttatgtatttaatgggatctaatgcatattattttaatcaatatttggagtatgtgg 396  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1398016 ttacttaagttgtgctgaaaaatattatgtctatgtggctggtttatgtatttattgggatctaatgcatattattttaatcaatatttggagtatgtgg 1397917  T
Q  397 ttaaaaggatttatttgattatgttaaattgatttttgaagctgcaacgtctgttgttaatgttcataagcttattcatttt 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1397916 ttaaaaggatttatttgattatgttaaattgatttttgaagctgcaacgtctgttgttaatgttcataagtttattcatttt 1397835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 2614666 - 2614750
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||  | |||||||||||| ||||||||||||||||||||||    
T  2614666 gtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcca 2614750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 22512388 - 22512304
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||   ||||||||||||| ||||||||||||||||||||||    
T  22512388 gtgagatgaacttaccaaaatatccctaatacatggagtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcca 22512304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 18034065 - 18033982
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||   ||||||||||||| |||||||||||||||||||||    
T  18034065 gtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 18033982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 33801552 - 33801469
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||||||||||||||||||||||||||||| |||||||||  ||||||| |||||| | |||||||||||||||||||    
T  33801552 gtgagatgaacttactaaaatatccctaatacatggagtgtacaatggggtgtagaaataaaggatgttcatgtaacattttcc 33801469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 41334680 - 41334763
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| |||||||||||||||||| ||||||| ||| ||||||| ||||||| |||||||||||||||||||||    
T  41334680 gtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaagggtgttcatgtaacattttcc 41334763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 32473411 - 32473497
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaa 97  Q
    |||||||||| |||| |||||||||||||| |||| |||||||||||||||||| || |||| ||||||||||||||||||||||||    
T  32473411 gtgagatgaaattaccaaaatatccctaatgcatgtggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttccaaa 32473497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 7617216 - 7617133
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||   ||||| ||||||| |||||||||||||||||||||    
T  7617216 gtgagatgaacttaccaaaatatccctaatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacattttcc 7617133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 5257078 - 5256997
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||  | |||| |||||||||||||| ||||||||||||    
T  5257078 gtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 5256997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 25915006 - 25915093
Alignment:
Q  12 tgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaa 100  Q
    |||||||||| ||| ||||||| | |||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  25915006 tgagatgaacctacaaaaatattc-taatacattgggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttcaaaaaa 25915093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 33855068 - 33855143
Alignment:
Q  19 aacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||| ||||| | ||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||    
T  33855068 aacttaccaaaatgttcctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 33855143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 17208157 - 17208074
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||| ||| |||| ||||||||||||||||| ||||| || |||| |||||||| ||||||||||||    
T  17208157 gtgagatgaatttaccaaaatgtccttaatgcatggggtgtacaataaagtgtatgattaaagggtgttcacgtaacattttcc 17208074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 38470662 - 38470579
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||| ||||| |||| ||||||||| ||||||||||||||||||||    |||| ||||||| |||||| ||||||||||||||    
T  38470662 gtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatggaatgtatgaataaagggtgtttatgtaacattttcc 38470579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 30622736 - 30622818
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||| || |||| ||||||||| |||| |||||| | ||||||| |||||| || |||| | |||||||||||||||||||    
T  30622736 gtgagataaatttaccaaaatatccttaatgcatgggct-tacaatagggtgtatgattaaaggatgttcatgtaacattttcc 30622818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 39122450 - 39122524
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaa 86  Q
    |||||||||| |||| ||||||| |||||||||| ||||||  ||| || |||| ||||||| |||||||||||||    
T  39122450 gtgagatgaatttaccaaaatattcctaatacat-gggtgtctaattagatgtatgaataaaaggtgttcatgtaa 39122524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 97 - 466
Target Start/End: Complemental strand, 32465508 - 32465139
Alignment:
Q  97 aaaagaaaccagttcacgtctctatccctcagattcactctctcaccatggaaacttcacaaaccataaaaatttcagctgcgcaatcgatttgtcatcc 196  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| || |||  || ||||| |||||||     
T  32465508 aaaagaaaccagttcacgtctctccccctcagattcactctctcaccatggaaacttcacaaaccataaaaattccaactgtacagtcgatctgtcatct 32465409  T
Q  197 gttcgtctcgttttccatcatcgtgtcactcgtgttcttcattgactcgtcttcttccatcaatttctattatattccatttttaatttctgctttaata 296  Q
    |||||||||||||||| |||| |||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  32465408 gttcgtctcgttttccgtcatagtgtaagtcgtgttcttcattgactcgtcttcttccatccatttctattatattccatttttaatttctactttaata 32465309  T
Q  297 ttactcaagttgtgctgaaaaatattatgtctatgttgctggtttatgtatttaatgggatctaatgcatattattttaatcaatatttggagtatgtgg 396  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||    
T  32465308 ttactcaagttgtgttgaaaaatgttatgtctatgttgctggtttatgtatttattgggatccaatgcatattattttaatcaacatttggagtatgtgg 32465209  T
Q  397 ttaaaaggatttatttgattatgttaaattgatttttgaagctgcaacgtctgttgttaatgttcataag 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32465208 ttaaaaggatttatttgattatgttaaattgatttttgaagctgcaacgtctgttgttaatgttcataag 32465139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 7273352 - 7273435
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7273352 gtgagatgaacttaccaaaatatctctaatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacattttcc 7273435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 24204004 - 24204085
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  24204004 gtgagatgaacttaccaaaatatccctaatacatggagtgtacaatagggtgtaggaataaatggtgttcatgtaacatttt 24204085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 26670026 - 26670109
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  26670026 gtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 26670109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 13743238 - 13743322
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  | |||| ||||||| ||||||||||||||||||||||    
T  13743238 gtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcca 13743322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 13748738 - 13748822
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  | |||| ||||||| ||||||||||||||||||||||    
T  13748738 gtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcca 13748822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 7292830 - 7292747
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| |||||||||||||||||| ||||||| ||| ||||||| ||||||||||||||| |||||||||||||    
T  7292830 gtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacattttcc 7292747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 7367632 - 7367549
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||||| ||||||| |||||||||||    
T  7367632 gtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacattttcc 7367549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 9698350 - 9698433
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||  | |||||||||||| |||||||||||||||||||||    
T  9698350 gtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 9698433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 33242486 - 33242403
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||| ||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  33242486 gtgagatgaatttaccaaaatgtccttaatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaacattttcc 33242403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 26466882 - 26466799
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| |||||| ||||||||||||| |||||||||  |||||||||||||| |||||| ||||||||||||||    
T  26466882 gtgagatgaacttaccaaaataaccctaatacatggagtgtacaatggggtgtaggaataaagggtgtttatgtaacattttcc 26466799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 30014426 - 30014341
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaa 96  Q
    ||||||||||||||| ||||||| ||||||||||||| |||| |||  | |||||||||||| |||||||||||||||||||||||    
T  30014426 gtgagatgaacttaccaaaatatgcctaatacatgggatgtataatgggatgtaggaataaagggtgttcatgtaacattttccaa 30014341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 30736065 - 30735984
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||||  ||||||||||||||  ||||||||||||||||||    
T  30736065 gtgagatgaacttaccaaaatatcactaatacatgaggtgtacaatggggtgtaggaataaaaagtgttcatgtaacatttt 30735984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 33253996 - 33253912
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    |||||||||| |||| || || |||||||| |||||||||||||||| |||||  || |||||||||||||||||||||||||||    
T  33253996 gtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacattttcca 33253912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 3213483 - 3213400
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||| ||||| |||| ||||||||| |||||||||||||||||||| || |||| ||||||| |||||| ||||||||||||||    
T  3213483 gtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 3213400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 27441625 - 27441544
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    |||||||||| |||| ||||||||| |||||||| || ||||||||| |||||| || |||| |||||||||||||||||||    
T  27441625 gtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 27441544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 21280012 - 21279929
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||||||||||||||||||| ||| ||||    ||||| |||||| |||||||||||||||||||||    
T  21280012 gtgagatgaatttaccaaaatatccctaatacatgggatgtgcaatggaatgtagaaataaagggtgttcatgtaacattttcc 21279929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 21293694 - 21293777
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||| ||||| |||| ||||||||| |||||||||||||||||| | |  |||| ||||||| |||||| ||||||||||||||    
T  21293694 gtgaaatgaatttaccaaaatatccttaatacatggggtgtacagtgaaatgtatgaataaagggtgtttatgtaacattttcc 21293777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 31109255 - 31109322
Alignment:
Q  27 aaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||||| | ||||||||||| |||  | |||| || |||| |||||||||||||||||||||    
T  31109255 aaaatatccctagtgcatggggtgtataatgggatgtatgattaaagggtgttcatgtaacattttcc 31109322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 43571103 - 43571191
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaa 99  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  43571103 gtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttccaaaaa 43571191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 5489859 - 5489776
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||  | |||||||||||| |||||||||||||||||||||    
T  5489859 gtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 5489776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 35003377 - 35003288
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaa 100  Q
    |||||||||| |||| ||||||||| ||||  ||||||||||||||| |||||| || |||| |||||||||||||||||||||||||||    
T  35003377 gtgagatgaatttaccaaaatatccttaatgtatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttccaaaaaa 35003288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 38336001 - 38335917
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    |||||||||| |||| ||||||||| |||| |||||| |||||||||||||||| || |||| ||||||||||||||||||||||    
T  38336001 gtgagatgaatttaccaaaatatccttaatgcatgggatgtacaataaggtgtatgattaaagggtgttcatgtaacattttcca 38335917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 48119711 - 48119627
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    |||||||||| |||| ||||||||| |||| |||||||||||||||| |||||| || |||| ||||||||||||||||||||||    
T  48119711 gtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcca 48119627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 44112760 - 44112677
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||| |||||||| |||||||||||||||| |||||| || |||| |||||||||||||||||||||    
T  44112760 gtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44112677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 48498979 - 48499062
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||   |||||| ||||||  ||||||||||||||||||||    
T  48498979 gtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 48499062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 4401411 - 4401329
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatg-gtgttcatgtaacatttt 92  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||| | ||||||||||||| | ||||||||||| ||||||    
T  4401411 gtgagatgaacttaccaaaatatctctaatacatggggtgtacaatgaagtgtaggaataaaagagtgttcatgtatcatttt 4401329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 50448280 - 50448365
Alignment:
Q  14 agatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaa 99  Q
    |||||||||||| ||||||||||||||||||  ||||||||||   |||||| ||||||  |||||||||||||||||||||||||    
T  50448280 agatgaacttacaaaaatatccctaatacataaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttccaaaaa 50448365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 24769523 - 24769599
Alignment:
Q  18 gaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||| ||||||||||||||||||||||||||||||   |||||| |||||| |||||||||| ||||||||||    
T  24769523 gaacttaccaaaatatccctaatacatggggtgtacaatggagtgtagaaataaaaggtgttcatgaaacattttcc 24769599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 37814861 - 37814778
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||| ||||| |||| ||||||||| |||||||||||||||||||| || |||| ||||||| |||||| ||||||||||||||    
T  37814861 gtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 37814778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 2497579 - 2497660
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||| ||||||||| ||||| ||||||||||||||    |||| |||||||||||||| ||||||||||||    
T  2497579 gtgagatgaacttaccaaaatatccttaatatatggggtgtacaatggaatgtatgaataaatggtgtttatgtaacatttt 2497660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 41065236 - 41065147
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaa 100  Q
    |||||||||| |||| |||||  ||||||| |||||||||||||| | |||||| || |||| ||||||||||||||||||||| |||||    
T  41065236 gtgagatgaaattaccaaaatgcccctaatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgtaacattttcctaaaaa 41065147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 45427762 - 45427845
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||| |||||||| ||||| |||||||||| |||||| || |||| ||| |||||||||||||||||    
T  45427762 gtgagatgaaattaccaaaatgtccctaatgcatggagtgtacaatagggtgtatgattaaaaggtattcatgtaacattttcc 45427845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 750323 - 750405
Alignment:
Q  12 tgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||| |||  ||||||||||| ||||||||||||||||||  ||||||||||  || |||||||| ||||||||||||    
T  750323 tgagatgaatttatcaaaatatccctgatacatggggtgtacaatggggtgtaggaaataagggtgttcacgtaacattttcc 750405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 7447908 - 7447820
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaa 100  Q
    ||||||||||||||  ||||||||  ||||||||||| ||||||||  | |||||||||||| | ||||||||||||||||| |||||||    
T  7447908 gtgagatgaacttatcaaaatatctgtaatacatggg-tgtacaatgggatgtaggaataaaggatgttcatgtaacatttttcaaaaaa 7447820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 38113212 - 38113295
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||| ||  |||| |||||||||||||||| |||||| || |||| ||||||||| |||||||||||    
T  38113212 gtgagatgaatttaccaaaatgtcattaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatataacattttcc 38113295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 45639749 - 45639832
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||||||| ||||  ||||||||||||||| | |||| || ||||  ||||||||||||||||||||    
T  45639749 gtgagatgaatttaccaaaatatccttaatgtatggggtgtacaataggatgtatgattaaagagtgttcatgtaacattttcc 45639832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 46168466 - 46168383
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||||||| |||| ||| |||||||||||| | | || || |||| |||||||||||||||||||||    
T  46168466 gtgagatgaatttaccaaaatatccttaatgcattgggtgtacaataggatatatgattaaagggtgttcatgtaacattttcc 46168383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 26585543 - 26585462
Alignment:
Q  13 gagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||| |||||||||||||| |||| ||||||||||||||||  ||||| || ||||   ||||||| |||||||||||    
T  26585543 gagatgaatttactaaaatatccttaatgcatggggtgtacaatatagtgtatgattaaagaatgttcatctaacattttcc 26585462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 23989540 - 23989624
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaat-aaatggtgttcatgtaacattttcc 94  Q
    ||||||| || |||| |||||||||||||||||| |||| ||||||   ||||| |||| ||| |||||||||||||||||||||    
T  23989540 gtgagataaatttaccaaaatatccctaatacatagggtatacaattgagtgtatgaataaaagggtgttcatgtaacattttcc 23989624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 14427404 - 14427347
Alignment:
Q  37 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||| |||| ||||||||||| |||||| || |||| |||||||||||||||||||||    
T  14427404 taatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 14427347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 35000146 - 35000214
Alignment:
Q  27 aaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||| |||||||||||||  || |||||||  ||||| || |||| ||||||||||||||||||||||    
T  35000146 aaaatgtccctaatacatgaagtatacaatagagtgtatgattaaaaggtgttcatgtaacattttcca 35000214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 4888126 - 4888085
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgta 52  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||    
T  4888126 gtgagataaacttaccaaaatatccctaatacatgggatgta 4888085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 768 - 685
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  768 gtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 30838715 - 30838632
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  30838715 gtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 30838632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 1750497 - 1750413
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  1750497 gtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcca 1750413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 43335780 - 43335863
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||    
T  43335780 gtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtaggaataaatgatgttcatataacattttcc 43335863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 12302270 - 12302353
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||  ||||||| |||||| |||||||||||||||||||||    
T  12302270 gtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 12302353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 16096830 - 16096746
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||||| |||| || |||||||||||||||||||||||||| |||  |||||||||||||| ||||||||||||||||||||||    
T  16096830 gtgagattaactcaccaaaatatccctaatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacattttcca 16096746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 19047240 - 19047152
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaa 99  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||    |||||||||||| |||||||||||||||||||| |||||    
T  19047240 gtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttctaaaaa 19047152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 4764743 - 4764826
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| |||||||   ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  4764743 gtgagatgaatttaccaaaatatttataatacatggggtgtacaatagggtgtaggaataaatggtgttgatgtaacattttcc 4764826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 33229381 - 33229303
Alignment:
Q  15 gatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaat-aaatggtgttcatgtaacatttt 92  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| ||||||    
T  33229381 gatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaaagggtgttcatgtatcatttt 33229303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 12415477 - 12415561
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||||| || |||| ||||| |||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||    
T  12415477 gtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcca 12415561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 12427537 - 12427621
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||||| || |||| ||||| |||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||    
T  12427537 gtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcca 12427621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 43490419 - 43490499
Alignment:
Q  12 tgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    |||||||||||||| |||||||||||||||||| | |||||||||  | |||||||||||| |||||||||||||||||||    
T  43490419 tgagatgaacttaccaaaatatccctaatacatagagtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 43490499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 43114640 - 43114557
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||| |||||||| |||||||||||||||| |||||| || |||| |||||||||||||||||||||    
T  43114640 gtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 43114557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 11825671 - 11825752
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    |||||||||| |||| ||||| |||||||| |||||||||||||||| |||||| || |||| |||||||||||||||||||    
T  11825671 gtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 11825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 41281991 - 41282072
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    |||||||||| |||  ||||| |||||||| |||||||||||||||| |||||| || |||| |||||||||||||||||||    
T  41281991 gtgagatgaaattatcaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 41282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 16804051 - 16803968
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||  ||||| |||||||| |||||| ||||||||| |||||| || |||| |||||||||||||||||||||    
T  16804051 gtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 16803968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 16843333 - 16843250
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||  ||||| |||||||| |||||| ||||||||| |||||| || |||| |||||||||||||||||||||    
T  16843333 gtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 16843250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 34895758 - 34895841
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| || || |||||||| |||||||||||||||| |||||  || |||||||||||||||||||| |||||    
T  34895758 gtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactttcc 34895841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 6518486 - 6518566
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    |||||||||| |||| ||||| |||||||| ||||||||||||||||  ||||| || |||| |||||||||||||||||||    
T  6518486 gtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaa-ggtgttcatgtaacatttt 6518566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 13780752 - 13780836
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    |||||||||| |||  ||||||||||||||  |||||||||||||| ||||||  |||||||  ||||| |||||||||||||||    
T  13780752 gtgagatgaatttatcaaaatatccctaatgtatggggtgtacaatgaggtgtgtgaataaaatgtgttgatgtaacattttcca 13780836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 966851 - 966934
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||  | | |||| |||||||||||||||| |||||| || |||| |||||||||||||||||||||    
T  966851 gtgagatgaatttaccaaaacgttcttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 966934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 18491788 - 18491705
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||| | | |||| |||| ||||||||||| |||||| || |||| |||||||||||||||||||||    
T  18491788 gtgagatgaatttaccaaaatgttcttaatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 18491705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 34817793 - 34817875
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttc 93  Q
    |||||||||| |||| ||||| | | || | ||||||||||||||| ||||||  ||||||| ||||||||||||||||||||    
T  34817793 gtgagatgaatttaccaaaatgtgcgtagtgcatggggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacattttc 34817875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 42849875 - 42849916
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgta 52  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  42849875 gtgagatgaacttatcaaaatatccctaatacatggggtgta 42849916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 14285758 - 14285670
Alignment:
Q  12 tgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaa 100  Q
    ||||||||| |||| ||||||||  ||||| || |||||||||||| |||||| || |||| ||||||  ||||| ||||||| |||||    
T  14285758 tgagatgaatttaccaaaatatctttaatatatagggtgtacaatagggtgtatgattaaagggtgtttgtgtaatattttcctaaaaa 14285670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 42849911 - 42849947
Alignment:
Q  59 ggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    |||||||||||||| ||||||||||||||||||||||    
T  42849911 ggtgtaggaataaagggtgttcatgtaacattttcca 42849947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 4451967 - 4452020
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgta 64  Q
    |||||||||| |||| |||||||||||||| |||  ||||||||||||| ||||    
T  4451967 gtgagatgaatttaccaaaatatccctaatgcatatggtgtacaataagatgta 4452020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 42295278 - 42295197
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||    
T  42295278 gtgagatgaacttaccaaaatatccctaatacatggagtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 42295197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 42197452 - 42197544
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaagaa 103  Q
    ||||||||||||||| |||||||||||||||||| | |||| ||||  |||||||||||||||||||||||||||||||||||| ||||||||    
T  42197452 gtgagatgaacttaccaaaatatccctaatacatagtgtgtgcaatggggtgtaggaataaatggtgttcatgtaacattttcctaaaaagaa 42197544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 11582849 - 11582765
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||  | |||||||||||| ||||||||||||||||||||||    
T  11582849 gtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcca 11582765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 29705445 - 29705361
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||||||||||||||||    
T  29705445 gtgagatgaacttatcaaaatatccctaatacatggggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcca 29705361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 36743500 - 36743583
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||  | |||||||||||| |||||||||||||||||||||    
T  36743500 gtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 36743583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 2165981 - 2166063
Alignment:
Q  12 tgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||||||| |||||||| |||||||||||||| ||||||  |||||||||||||||||||||||||||| |||||||    
T  2165981 tgagatgaacttaccaaaatatctctaatacatggggtatacaatggggtgtaggaataaatggtgttcatgtaatattttcc 2166063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 29800967 - 29801048
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  | |||| |||||||||||||| ||||||||||||    
T  29800967 gtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 29801048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 246 - 436
Target Start/End: Original strand, 15244209 - 15244390
Alignment:
Q  246 tcttcttccatcaatttctattatattccatttttaatttctgctttaatattactc-aagttgtgctgaaaaatattatgtctatgttgctggtttatg 344  Q
    |||||||||||| ||||||||||| |||||||||| |||| |||||||||||||||| || |||||     ||| ||| || ||||||||||||||||||    
T  15244209 tcttcttccatccatttctattat-ttccattttttattt-tgctttaatattactccaaattgtgt----aaagattctgactatgttgctggtttatg 15244302  T
Q  345 tatttaatgggatctaatgcatattattttaatcaatatttggagtatgtggttaaaaggattta---tttgattatgttaaattgatttttgaa 436  Q
    |||||| | ||||||||||||||     |||||||||||||| |||||||   | ||||||||||    ||||||||||||||||||||||||||    
T  15244303 tatttatttggatctaatgcata-----ttaatcaatatttgtagtatgt--attaaaggatttaattgttgattatgttaaattgatttttgaa 15244390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 2547079 - 2546996
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||   |||||| ||||||  ||||||||||||||||||||    
T  2547079 gtgagatgaacttactaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 2546996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 5754986 - 5754903
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||||||  | |||||||||||| |||||||||||||||||||||    
T  5754986 gtgagatgaacttaccaaaatatccctaatatatgggatgtacaatgggatgtaggaataaaaggtgttcatgtaacattttcc 5754903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 45397399 - 45397317
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttc 93  Q
    ||||||||||||||| |||||||||||||||||| ||||||| |||  |||||||||||||| |||||||| |||||||||||    
T  45397399 gtgagatgaacttacaaaaatatccctaatacatagggtgtagaatggggtgtaggaataaagggtgttcacgtaacattttc 45397317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 18066735 - 18066824
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaa 100  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||   |||| || |||| ||||||||||||||||||||| |||||    
T  18066735 gtgagatgaaattactaaaatatccctaatacatgggatgtacaatagaatgtatgattaaagggtgttcatgtaacattttcctaaaaa 18066824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 30912579 - 30912660
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||| |||||| ||||||||||||  |||||||||  |||||||||||||| |||||||||||||||||||    
T  30912579 gtgagatgaacttaccaaaatacccctaatacatgaagtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 30912660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 42699340 - 42699259
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||| ||||||||| ||||||||  ||||||||||  |||||||||||||| |||||||||||||||||||    
T  42699340 gtgagatgaacttacaaaaatatccataatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 42699259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 30660762 - 30660842
Alignment:
Q  14 agatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||||| |||||||||||||||||| |||||||||||  | ||||| |||||| |||||||||||||||||||||    
T  30660762 agatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtagaaataaagggtgttcatgtaacattttcc 30660842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 35181599 - 35181516
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||| |||||||| |||||||||||||||| |||||| || |||| |||||||||||||||||||||    
T  35181599 gtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 35181516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 1375625 - 1375540
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaa 96  Q
    ||||||| || |||| ||||||||||||||| ||||||||||||||  |||||| ||||||| ||||||||||||| |||||||||    
T  1375625 gtgagataaatttaccaaaatatccctaatatatggggtgtacaattgggtgtatgaataaaaggtgttcatgtaaaattttccaa 1375540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 31384747 - 31384672
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaa 86  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||   |||| ||||||| |||||||||||||    
T  31384747 gtgagatgaacttaccaaaatattcctaatacatggggtgtacaatagaatgtaagaataaagggtgttcatgtaa 31384672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 34304871 - 34304788
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||| |||||||| |||||||||||||||| |||||| || |||| | |||||||||||||||||||    
T  34304871 gtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcc 34304788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 20148843 - 20148762
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||||||  | |||| ||||||| |||||| ||||||||||||    
T  20148843 gtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 20148762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 26125718 - 26125637
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||    |||| ||||||| |||||| ||||||||||||    
T  26125718 gtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttt 26125637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 33630010 - 33630091
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    |||||||||| |||||||||| |||||||| ||| ||||||||||| ||||||| || |||| ||||||| |||||||||||    
T  33630010 gtgagatgaaattactaaaatgtccctaatgcatagggtgtacaatgaggtgtatgattaaagggtgttcgtgtaacatttt 33630091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 16603643 - 16603726
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||| ||  |||| ||||||||||| ||||||||||| || |||| ||||| |||||||||||||||    
T  16603643 gtgagatgaatttaccaaaatgtctttaatgcatggggtgtataataaggtgtatgattaaagggtgtgcatgtaacattttcc 16603726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 15244044 - 15244105
Alignment:
Q  100 agaaaccagttcacgtctctatccctcagattcactctctcaccatggaaacttcacaaacc 161  Q
    |||||| | ||||||| ||| || |||||| |||||||||||||||||||||||||||||||    
T  15244044 agaaacaatttcacgtttctctctctcagactcactctctcaccatggaaacttcacaaacc 15244105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 28977182 - 28977145
Alignment:
Q  58 aggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  28977182 aggtgtaggaataaagggtgttcatgtaacattttcca 28977145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 9241635 - 9241594
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgta 52  Q
    ||||||||||||||| ||||||||||||||| || |||||||    
T  9241635 gtgagatgaacttacaaaaatatccctaatatatagggtgta 9241594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 35069804 - 35069721
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||  ||||||||||||||||||||    
T  35069804 gtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagagtgttcatgtaacattttcc 35069721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 42538448 - 42538535
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaa 98  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||  | |||||||||||| |||||||||||||||||||||||||    
T  42538448 gtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttccaaaa 42538535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 44416951 - 44417037
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaa 97  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||    
T  44416951 gtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttttcaaa 44417037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 43343641 - 43343722
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||    
T  43343641 gtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 43343722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 24001029 - 24001113
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||  | |||||||||||| ||||||||||||||||||||||    
T  24001029 gtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcca 24001113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 5810941 - 5811030
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaa 100  Q
    ||||||||||||||  ||||||||||||||| || |||||||||||  |||||||||||||| |||| ||||||||||||||||||||||    
T  5810941 gtgagatgaacttatcaaaatatccctaatatatagggtgtacaatggggtgtaggaataaagggtggtcatgtaacattttccaaaaaa 5811030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 5194248 - 5194337
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaa 100  Q
    |||||||||| |||  ||||||||| ||| |||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||    
T  5194248 gtgagatgaatttatcaaaatatccttaaaacatagggtgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcctaaaaa 5194337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 5015478 - 5015395
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||   |||||| ||||||  ||||||||||||||||||||    
T  5015478 gtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 5015395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 42972935 - 42972852
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||   ||||||||||||| | |||||| ||||||||||||    
T  42972935 gtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtaggaataaaggatgttcaggtaacattttcc 42972852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 4638216 - 4638297
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||| ||||||||| ||||| ||||||||||||||   ||||| ||||||| |||||||||||||||||||    
T  4638216 gtgagatgaacttaccaaaatatccataatatatggggtgtacaattgagtgtatgaataaaaggtgttcatgtaacatttt 4638297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 10573832 - 10573751
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    |||||||||| |||| ||||||| ||||||||||||||||||||||| | |||| ||||||| |||||| ||||||||||||    
T  10573832 gtgagatgaatttaccaaaatattcctaatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttt 10573751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 26898422 - 26898499
Alignment:
Q  14 agatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattt 91  Q
    |||||||||||| ||||||||||||||||||||  ||||||||  |||||| ||||||| ||||||||||||||||||    
T  26898422 agatgaacttaccaaaatatccctaatacatggaatgtacaattgggtgtatgaataaaaggtgttcatgtaacattt 26898499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 45326103 - 45326019
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 95  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||  | |||| ||||||| |||||| |||||||| ||||||    
T  45326103 gtgagatgaacttaccaaaatatccctaatatatggggtgtacaatgtgatgtatgaataaaaggtgtttatgtaacactttcca 45326019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 9216384 - 9216302
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| |||||||| ||||| |||||| ||||||||| | | |||||||||| |||||||||||||||||||||    
T  9216384 gtgagatgaacttaccaaaatatctctaatgcatggg-tgtacaataggatataggaataaagggtgttcatgtaacattttcc 9216302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 40237002 - 40236919
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||| |||||||| |||||||||||||||| | |||| || |||| |||||||||||||||||||||    
T  40237002 gtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaataggatgtatgattaaagggtgttcatgtaacattttcc 40236919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 43317526 - 43317443
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||  |||||||||||||  ||| || |||||||| ||||||| |||||||||||||||||||||||||||||    
T  43317526 gtgagatgaatttatcaaaatatccctaaagcataggatgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcc 43317443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 31513370 - 31513284
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaa 97  Q
    |||||||||| |||| ||||||||| |||| |||||||| ||||||| |||||| || ||||  |||||||||||||||||||||||    
T  31513370 gtgagatgaatttaccaaaatatccttaatgcatggggtatacaatagggtgtatgattaaagagtgttcatgtaacattttccaaa 31513284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 39998475 - 39998406
Alignment:
Q  27 aaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaa 96  Q
    ||||||||||||||||||||||||||||||| | |||| || ||||  ||||||||||||||||||||||    
T  39998475 aaaatatccctaatacatggggtgtacaataggatgtatgattaaaatgtgttcatgtaacattttccaa 39998406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 44326261 - 44326180
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||||||  | |||| ||||||| |||||| ||||||||||||    
T  44326261 gtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 44326180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 27393277 - 27393344
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgt 78  Q
    ||||||||||||||| |||||||||||||||||| | |||||||||| | |||||||||||| |||||    
T  27393277 gtgagatgaacttacaaaaatatccctaatacatagagtgtacaataggatgtaggaataaagggtgt 27393344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 32029837 - 32029908
Alignment:
Q  14 agatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgta 85  Q
    ||||||| |||| ||||||||||||||||||||||||||||||  ||||||||||||||  ||||| |||||    
T  32029837 agatgaatttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaaaagtgtttatgta 32029908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 16180374 - 16180454
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    |||||||||| |||| |||||||   |||||| |||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  16180374 gtgagatgaatttaccaaaatatttataatacgtggggtgtacaatg-ggtgtaggaataaatggtgttgatgtaacatttt 16180454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 38160596 - 38160641
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaat 56  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  38160596 gtgagatgaagttactaaaatatccctaatacatggggtgtacaat 38160641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 31408650 - 31408732
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttc 93  Q
    |||| ||||| |||| ||||||||| |||| |||||| |||||||||  ||||| || |||| ||||||||||||||||||||    
T  31408650 gtgaaatgaatttaccaaaatatccttaatgcatgggatgtacaatagagtgtatgattaaagggtgttcatgtaacattttc 31408732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 41861759 - 41861674
Alignment:
Q  11 gtgagatgaacttactaaaatatcccta--atacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||| ||||||| |||||||| |||  |||||| ||||||| |||  |||||| ||||||| |||||||||||||||||||||    
T  41861759 gtgagataaacttaccaaaatatctctataatacatagggtgtataattgggtgtatgaataaagggtgttcatgtaacattttcc 41861674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 33384954 - 33384870
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataagg-tgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||| |||||||| ||||| || ||||||| || |||| || |||||| |||||||||||||||||||    
T  33384954 gtgagatgaatttaccaaaatgtccctaatgcatggagtatacaataggggtgtatgattaaatgatgttcatgtaacattttcc 33384870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 24280613 - 24280696
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| |||||||  ||| | |||||| |||| |||| |||||| ||||||| |||||||| ||||||||||||    
T  24280613 gtgagatgaatttaccaaaatatttctagtgcatgggatgtagaatagggtgtatgaataaagggtgttcacgtaacattttcc 24280696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 27535248 - 27535331
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||| |||| ||||| ||  ||| |||||| ||||||||||  ||||| || |||| |||||||||||||||||||||    
T  27535248 gtgagatgaaattaccaaaatgtctttaacacatggagtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 27535331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 38160661 - 38160694
Alignment:
Q  61 tgtaggaataaatggtgttcatgtaacattttcc 94  Q
    |||||||||||| |||||||||||||||||||||    
T  38160661 tgtaggaataaagggtgttcatgtaacattttcc 38160694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 112738 - 112650
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaa 99  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||    |||||||||||| |||||||||||||||||||| |||||    
T  112738 gtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttctaaaaa 112650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 14205 - 14288
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| |||||||||||||||||| || ||||||||  ||||||| |||||| |||||||||||||||||||||    
T  14205 gtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 14288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 24533 - 24616
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| |||||||||||||||||| || ||||||||  ||||||| |||||| |||||||||||||||||||||    
T  24533 gtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 24616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 11334 - 11251
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 94  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||  |||||| |||||||  |||||||||| |||||||||    
T  11334 gtgagatgaacttaccaaaatatccctaatatatggggtgtacaatggggtgtatgaataaagtgtgttcatgtgacattttcc 11251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 23441 - 23524
Alignment:
Q  14 agatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaa 97  Q
    |||||||||||| |||||||| |||||||||||| ||||||||   ||||||||||||| ||||||||| ||||||||||||||    
T  23441 agatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttccaaa 23524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 35473 - 35559
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaa 97  Q
    |||||||||| |||| || || |||||||| |||||||||||||||| |||||| || ||||||||||| |||||||||||||||||    
T  35473 gtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatatggtgtatgattaaatggtgtttatgtaacattttccaaa 35559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 45736 - 45817
Alignment:
Q  11 gtgagatgaacttactaaaatatccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 92  Q
    |||||||||| |||| ||||||||| |||||||| || ||||||||| |||||| || |||| |||||||||||||||||||    
T  45736 gtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 45817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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