View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2673_high_2 (Length: 687)
Name: NF2673_high_2
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2673_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 2e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 428 - 676
Target Start/End: Original strand, 12566136 - 12566385
Alignment:
| Q |
428 |
ctgtaatgttcgtttgattcaaattggtagatctgataacaaatcactctctaggaaaacggctcccatctctctctaacttttccaacctctcccgaca |
527 |
Q |
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| T |
12566136 |
ctgtaatgttcgtttgattcaaattgatagatctaataacaaatctctctctaggaaaacaactcccatctctctctaacttttccaacctcttccgaca |
12566235 |
T |
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| Q |
528 |
accgacctcctttctcccttgccaatccaa-annnnnnncttctgcgatgtagatccacacaagcgagggtgtgtccggccttcacggaggtatcaccat |
626 |
Q |
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| T |
12566236 |
accgacctcctttctcccttgccaatccaatttttttttcttctgcgatgtagatccacacaagcgacggtgtgtccggccttcacagaggtatcaccat |
12566335 |
T |
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| Q |
627 |
cttgtttccagtttgtgtttcgtcgcttcactgccttttgcttgtttctt |
676 |
Q |
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| T |
12566336 |
cttgtttccagtttgtgtttcgtcgcttcactgtcttttgcttgtttctt |
12566385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 64 - 315
Target Start/End: Original strand, 12565781 - 12566027
Alignment:
| Q |
64 |
ttttgagtttatctctaaattctaaaagaagtcctccatttttcaaaataaaattaagagtatcgcaagttacaagtatttgatttcttcnnnnnnnnnn |
163 |
Q |
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| T |
12565781 |
ttttgagtttatctctaaattctaaaagaagccctccatttttcaaaataaaattaagagtatcgcaagttacaagcatttgctttcttcaaaaaaaa-- |
12565878 |
T |
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| Q |
164 |
nttacaaacatttggataagatgacaactatcttttttcgaaactcttaatactaagatggttctagccttctaggttaactatgtgcaaagagtgatat |
263 |
Q |
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| T |
12565879 |
-ttacaaacatttggataagatgacaactatcttttttcgaaactctcaatactaagatggttctagccttctaggataactatgtgcaaagagtgatat |
12565977 |
T |
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| Q |
264 |
agaannnnnnnnnngtttgaaatcactcatatgcatcatattttctcttcca |
315 |
Q |
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| T |
12565978 |
agaa--ttttttttgtttgaaatcactcatatgcatcatattttctcttcca |
12566027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 677
Target Start/End: Complemental strand, 20902803 - 20902721
Alignment:
| Q |
599 |
tgtccggccttcacggaggtatcaccatcttgtttccagtttgtgtttcgtcg----cttcactgccttttgcttgtttcttc |
677 |
Q |
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| T |
20902803 |
tgtctggccttcacggcggcatcaacatcttgtttccggcttgtggttcgtcgtcgccttcaccgccttttgctcgtttcttc |
20902721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 489 - 675
Target Start/End: Original strand, 459864 - 460046
Alignment:
| Q |
489 |
gctcccatctctctctaacttttccaacctctcccgacaaccgacctcctttctcccttgccaatccaaannnnnnncttctgcgatgtagatccacaca |
588 |
Q |
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| T |
459864 |
gctcccaccgctctctaacttttccaaccttccccaacaaccgacttgcttcctcccttgtcagtccaaatcctttgcttttgcgatgtagatccacgca |
459963 |
T |
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| Q |
589 |
agcgagggtgtgtccggccttcacggaggtatcaccatcttgtttccagtttgtgtttcgtcgc-ttcactgccttttgcttgtttct |
675 |
Q |
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| T |
459964 |
accgatggtgt----ggccttcacggcggcatcaccatcttcgttccagcttg-ggttcgtcgctttcgccgccttttgcttgtttct |
460046 |
T |
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