View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2673_high_20 (Length: 378)
Name: NF2673_high_20
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2673_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 27296987 - 27297342
Alignment:
| Q |
1 |
taaaggatcattatacttagtgtcttgccaccatactgaacctcttccatcaataatgccatttccctgaatagtaaatccaaccagttttgtaaagtcc |
100 |
Q |
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| T |
27296987 |
taaaggatcattatactgagtgtcttgccaccatactgaacctcttccatcaaaaatgccatttccttgaatagtaaatccaaccagttttgtaaagtcc |
27297086 |
T |
|
| Q |
101 |
aaccactgtaatagtcctctgccccaagcattggagtttgttggtgcaataatggttccatctacctgaaaaaatacacatccaaaatatgacttcgaac |
200 |
Q |
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| T |
27297087 |
aaccactgtaatagtcctctgccccaagcattggagtttgttggtgcaataatggttccatctacctgaaaaaatacacatccaaaatatgacttcgaac |
27297186 |
T |
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| Q |
201 |
accttggtgtagtagtaaacatggaggtgttaatagctgcacccttctctcatgtnnnnnnnntgttacctggaaaatgattctgggtttacagtatggg |
300 |
Q |
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| T |
27297187 |
accttggtgtagtagtaaatatggtggtgttaatagctgcacccttctctcatgtaaaaaaaatgttacctggaaaatgattctgggtttacagtatggg |
27297286 |
T |
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| Q |
301 |
cccgaaaaaacaatgggccccacatagaaggtgtaatctgctggaatgagcatggt |
356 |
Q |
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| T |
27297287 |
cccgaaaaaacaatgggccccacatagaaggtgtaatctgctggaatgagcatggt |
27297342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 14737306 - 14737167
Alignment:
| Q |
23 |
tcttgccaccatactgaacctcttccatcaataatgccatttccctgaatagtaaatccaaccagttttgtaaagtccaaccactgtaatagtcctctgc |
122 |
Q |
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||||||||||| ||||| |||||||||||||| | |||||||| ||||| |||| ||| | |||||||| || |||| |||||||| | | ||| | |
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| T |
14737306 |
tcttgccaccaaactgagcctcttccatcaatgacaccatttccttgaatggtaattccttctagttttgtgaattccagccactgtagtgttactccac |
14737207 |
T |
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| Q |
123 |
cccaagcattggagtttgttggtgcaataatggttccatc |
162 |
Q |
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| T |
14737206 |
tccaagcatttgggtttgttggagcaataattgtaccatc |
14737167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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