View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2673_high_21 (Length: 354)
Name: NF2673_high_21
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2673_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 41000693 - 41000362
Alignment:
| Q |
1 |
tttattcatggtgctaatgagagcacagccaatgcctacaagagacagttcaaaacagatttggcaagcttcttgagtgcaaggtcagtggaaatgaaga |
100 |
Q |
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| T |
41000693 |
tttattcatggtgctaatgagagcacagccaatgcctacaagagacagttcaaaacagatttggcaagcttcttgagtgcaaggtcagtggaaatgaaga |
41000594 |
T |
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| Q |
101 |
gagaggggtccatgttcttagtttgcttaggcagaacttcagtggaccccacagaacaaggtggtgctggagttctttttgggacccactttcaggatgc |
200 |
Q |
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| T |
41000593 |
gagaggggtccatgttcttagtttgcttaggcagaacttcagtggaccccacagaacaaggtggtgctggagttctttttgggacccactttcaggatgc |
41000494 |
T |
|
| Q |
201 |
ttgggatgaccttgtacaagaggtataataataataattagaaacatttttatgcatgctttgtgttttttgaacagtagtcacttcacaatcacatata |
300 |
Q |
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| T |
41000493 |
ttgggatgaccttgtacaagaggtataataa---taattagaaacatttttatgcatgctttgtgttttttgaacagtagtcacttcacaatcacatata |
41000397 |
T |
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| Q |
301 |
tatagcctctatttacaattggcagaccaaaaagg |
335 |
Q |
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| T |
41000396 |
tttagcctctatttacaattggcagaccaaaaagg |
41000362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 20853032 - 20852701
Alignment:
| Q |
1 |
tttattcatggtgctaatgagagcacagccaatgcctacaagagacagttcaaaacagatttggcaagcttcttgagtgcaaggtcagtggaaatgaaga |
100 |
Q |
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| T |
20853032 |
tttattcatggtgctaatgagagcacagccaatgcctacaagagacagttcaaaacagatttggcaagcttcttgagtgcaaggtcagtggaaatgaaga |
20852933 |
T |
|
| Q |
101 |
gagaggggtccatgttcttagtttgcttaggcagaacttcagtggaccccacagaacaaggtggtgctggagttctttttgggacccactttcaggatgc |
200 |
Q |
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| T |
20852932 |
gagaggggtccatgttcttagtttgcttaggcagaacttcagtggaccccacagaacaaggtggtgctggagttctttttgggacccactttcaggatgc |
20852833 |
T |
|
| Q |
201 |
ttgggatgaccttgtacaagaggtataataataataattagaaacatttttatgcatgctttgtgttttttgaacagtagtcacttcacaatcacatata |
300 |
Q |
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| T |
20852832 |
ttgggatgaccttgtacaagaggtataataa---taattagaaacatttttatgcatgctttgtgttttttgaacagtagtcacttcacaatcacatata |
20852736 |
T |
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| Q |
301 |
tatagcctctatttacaattggcagaccaaaaagg |
335 |
Q |
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| ||||||||||||||||||||||||||||||||| |
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| T |
20852735 |
tttagcctctatttacaattggcagaccaaaaagg |
20852701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 21556886 - 21556765
Alignment:
| Q |
104 |
aggggtccatgttcttagtttgcttaggcagaacttcagtggaccccacagaacaaggtggtgctggagttctttttgggacccactttcaggatgcttg |
203 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||| || || |||||||| ||||| | || |||||||||||||||||||||||||| |
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| T |
21556886 |
aggggtccatgttcttggtttgtttaggcagaacttcagtggaccctactgaccaaggtggggctggtctcctctttgggacccactttcaggatgcttg |
21556787 |
T |
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| Q |
204 |
ggatgaccttgtacaagaggta |
225 |
Q |
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|||||| ||||| ||||||||| |
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| T |
21556786 |
ggatgatcttgtccaagaggta |
21556765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 37129008 - 37128925
Alignment:
| Q |
38 |
acaagagacagttcaaaacagatttggcaa-gcttcttgagtgcaaggtcagtggaaatgaagagagaggggtccatgttctta |
120 |
Q |
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|||||||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
37129008 |
acaagagacaattcaaaacagatttggcaaagcttcttgggtgcaaggtcaatggaaatgaagagagagggatccatgttctta |
37128925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 37128805 - 37128871
Alignment:
| Q |
261 |
ttgtgttttttgaacagtagtcacttcacaatcacatatatatagcctctatttacaattggcagaccaaa |
331 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
37128805 |
ttgtgttttttgaacagtagtcatttcacaatcac----atatagcctctatttacaattggcataccaaa |
37128871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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