View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2673_high_25 (Length: 288)

Name: NF2673_high_25
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2673_high_25
NF2673_high_25
[»] chr5 (25 HSPs)
chr5 (1-270)||(24138682-24138956)
chr5 (1-110)||(12045751-12045860)
chr5 (1-110)||(40484068-40484177)
chr5 (9-110)||(4125194-4125295)
chr5 (1-110)||(17771974-17772083)
chr5 (1-110)||(7888821-7888930)
chr5 (1-110)||(16631880-16631989)
chr5 (1-110)||(38837677-38837786)
chr5 (1-109)||(746875-746983)
chr5 (1-107)||(23975659-23975765)
chr5 (1-94)||(10494761-10494854)
chr5 (122-229)||(19758957-19759062)
chr5 (1-109)||(15060997-15061105)
chr5 (1-67)||(23409004-23409070)
chr5 (9-59)||(31853145-31853195)
chr5 (1-110)||(8886857-8886966)
chr5 (1-110)||(17039637-17039746)
chr5 (1-65)||(20959532-20959596)
chr5 (1-110)||(26708591-26708700)
chr5 (1-110)||(26978325-26978434)
chr5 (1-65)||(27428063-27428127)
chr5 (1-110)||(36716206-36716315)
chr5 (77-110)||(5982746-5982779)
chr5 (77-110)||(29727901-29727934)
chr5 (15-59)||(33735030-33735074)
[»] chr7 (32 HSPs)
chr7 (1-107)||(26415448-26415554)
chr7 (1-110)||(24605862-24605971)
chr7 (1-110)||(18217853-18217962)
chr7 (1-110)||(3872193-3872302)
chr7 (1-110)||(3904484-3904593)
chr7 (1-110)||(6849217-6849326)
chr7 (1-110)||(23750742-23750851)
chr7 (1-110)||(31425517-31425626)
chr7 (1-110)||(2093368-2093477)
chr7 (1-110)||(21917340-21917449)
chr7 (1-110)||(22486418-22486527)
chr7 (9-110)||(47523656-47523757)
chr7 (1-67)||(10050885-10050951)
chr7 (1-67)||(14786684-14786750)
chr7 (1-110)||(1842918-1843027)
chr7 (1-110)||(2650834-2650943)
chr7 (1-110)||(11036531-11036640)
chr7 (15-67)||(15969822-15969874)
chr7 (1-106)||(20174044-20174149)
chr7 (1-110)||(20429489-20429598)
chr7 (9-110)||(27806050-27806151)
chr7 (9-110)||(28800910-28801011)
chr7 (1-110)||(37135291-37135400)
chr7 (1-59)||(25777169-25777227)
chr7 (1-65)||(816242-816306)
chr7 (15-67)||(33427728-33427780)
chr7 (9-67)||(15330254-15330312)
chr7 (1-67)||(45664792-45664858)
chr7 (9-65)||(4514797-4514853)
chr7 (1-65)||(10222681-10222744)
chr7 (1-65)||(31042275-31042339)
chr7 (9-65)||(36993852-36993908)
[»] scaffold0599 (1 HSPs)
scaffold0599 (1-110)||(7529-7638)
[»] chr8 (28 HSPs)
chr8 (1-110)||(3823155-3823264)
chr8 (1-110)||(8555310-8555419)
chr8 (9-110)||(27869268-27869369)
chr8 (1-110)||(30466960-30467069)
chr8 (4-110)||(21219246-21219352)
chr8 (1-110)||(16061945-16062054)
chr8 (9-110)||(17810328-17810429)
chr8 (1-110)||(19240889-19240998)
chr8 (1-110)||(19256234-19256343)
chr8 (1-110)||(19314073-19314182)
chr8 (1-110)||(23752292-23752401)
chr8 (9-110)||(24193202-24193303)
chr8 (9-110)||(24576030-24576131)
chr8 (1-110)||(43431565-43431674)
chr8 (1-110)||(11938767-11938875)
chr8 (1-110)||(5670175-5670284)
chr8 (1-65)||(5879226-5879290)
chr8 (1-110)||(21350500-21350609)
chr8 (1-110)||(32247931-32248040)
chr8 (1-67)||(6817076-6817142)
chr8 (1-67)||(24636674-24636740)
chr8 (1-110)||(30687958-30688067)
chr8 (8-67)||(19493704-19493763)
chr8 (1-110)||(25273334-25273442)
chr8 (1-107)||(26399017-26399122)
chr8 (9-65)||(17103916-17103972)
chr8 (9-65)||(17824667-17824723)
chr8 (1-110)||(31399514-31399623)
[»] chr6 (33 HSPs)
chr6 (1-110)||(5360433-5360542)
chr6 (1-110)||(5192195-5192304)
chr6 (1-110)||(12160853-12160961)
chr6 (1-110)||(28364935-28365044)
chr6 (1-110)||(25398026-25398135)
chr6 (1-107)||(21691504-21691611)
chr6 (1-110)||(495633-495742)
chr6 (1-110)||(9892987-9893096)
chr6 (1-110)||(20182169-20182278)
chr6 (1-110)||(22153713-22153822)
chr6 (1-110)||(22579355-22579464)
chr6 (1-56)||(20692871-20692926)
chr6 (1-67)||(3673182-3673248)
chr6 (1-67)||(12499240-12499306)
chr6 (1-67)||(12506569-12506635)
chr6 (1-67)||(12509595-12509661)
chr6 (1-67)||(13145026-13145092)
chr6 (3-110)||(30833966-30834073)
chr6 (9-110)||(1939248-1939349)
chr6 (1-110)||(2669333-2669442)
chr6 (33-110)||(5250195-5250272)
chr6 (9-110)||(9885275-9885376)
chr6 (1-65)||(12845027-12845091)
chr6 (1-110)||(15364464-15364573)
chr6 (1-110)||(21990181-21990289)
chr6 (1-67)||(343612-343678)
chr6 (1-91)||(23281810-23281900)
chr6 (9-110)||(11049757-11049858)
chr6 (9-65)||(14772693-14772749)
chr6 (9-110)||(26939619-26939720)
chr6 (1-67)||(19175826-19175892)
chr6 (20-65)||(11530268-11530313)
chr6 (6-67)||(17919565-17919626)
[»] chr4 (32 HSPs)
chr4 (1-110)||(38619869-38619978)
chr4 (1-109)||(36689699-36689807)
chr4 (1-110)||(4627084-4627193)
chr4 (1-110)||(19839201-19839310)
chr4 (1-110)||(25026579-25026688)
chr4 (1-107)||(9238634-9238740)
chr4 (1-110)||(4586764-4586873)
chr4 (1-110)||(5473871-5473980)
chr4 (1-110)||(7111952-7112061)
chr4 (1-110)||(9670485-9670594)
chr4 (9-110)||(16915399-16915500)
chr4 (1-110)||(30268994-30269103)
chr4 (1-110)||(30283086-30283195)
chr4 (1-110)||(32175743-32175852)
chr4 (1-110)||(38645772-38645881)
chr4 (1-109)||(30568006-30568114)
chr4 (1-67)||(14944768-14944834)
chr4 (1-110)||(55309218-55309328)
chr4 (1-110)||(13028822-13028931)
chr4 (1-110)||(19680430-19680539)
chr4 (9-65)||(33914089-33914145)
chr4 (1-110)||(45532585-45532694)
chr4 (1-110)||(54539308-54539417)
chr4 (1-109)||(18051861-18051969)
chr4 (1-67)||(18744119-18744185)
chr4 (1-65)||(39234964-39235026)
chr4 (1-110)||(27040031-27040140)
chr4 (9-67)||(22156650-22156708)
chr4 (1-65)||(18714924-18714988)
chr4 (9-65)||(25147751-25147807)
chr4 (1-65)||(30508009-30508073)
chr4 (1-65)||(46286280-46286344)
[»] chr3 (43 HSPs)
chr3 (1-110)||(11915778-11915887)
chr3 (1-110)||(19269870-19269979)
chr3 (1-110)||(27449108-27449217)
chr3 (1-110)||(29236064-29236173)
chr3 (1-107)||(18091556-18091662)
chr3 (1-110)||(1628235-1628344)
chr3 (9-110)||(7623537-7623638)
chr3 (9-110)||(8428199-8428300)
chr3 (1-110)||(18380044-18380153)
chr3 (1-110)||(19223469-19223578)
chr3 (9-110)||(25882598-25882699)
chr3 (1-110)||(48404880-48404989)
chr3 (1-107)||(29704041-29704147)
chr3 (1-107)||(1745497-1745602)
chr3 (1-110)||(5260957-5261066)
chr3 (1-110)||(13905044-13905153)
chr3 (1-110)||(13921345-13921454)
chr3 (1-110)||(21816741-21816850)
chr3 (9-110)||(26098841-26098942)
chr3 (1-110)||(43329769-43329878)
chr3 (15-110)||(11837220-11837315)
chr3 (20-110)||(29956411-29956501)
chr3 (20-110)||(30005566-30005656)
chr3 (1-110)||(5565742-5565851)
chr3 (1-110)||(11007689-11007798)
chr3 (9-110)||(11085348-11085449)
chr3 (1-65)||(15490055-15490118)
chr3 (9-65)||(30219366-30219422)
chr3 (1-109)||(4393357-4393465)
chr3 (1-109)||(18539824-18539932)
chr3 (1-67)||(10803740-10803806)
chr3 (1-67)||(19545530-19545596)
chr3 (1-67)||(23773497-23773563)
chr3 (1-103)||(28859611-28859713)
chr3 (1-107)||(31433757-31433863)
chr3 (1-110)||(1310965-1311074)
chr3 (9-110)||(36543777-36543878)
chr3 (1-67)||(21490083-21490149)
chr3 (1-59)||(27212838-27212896)
chr3 (1-65)||(3461361-3461425)
chr3 (9-65)||(15064043-15064099)
chr3 (1-65)||(20615394-20615458)
chr3 (9-65)||(50665687-50665743)
[»] chr1 (30 HSPs)
chr1 (1-110)||(41120743-41120852)
chr1 (1-110)||(9177124-9177233)
chr1 (1-110)||(22603572-22603681)
chr1 (1-110)||(29549442-29549551)
chr1 (1-107)||(19081752-19081858)
chr1 (1-107)||(19129640-19129746)
chr1 (1-110)||(4340431-4340540)
chr1 (9-110)||(6412059-6412160)
chr1 (1-110)||(8941000-8941109)
chr1 (9-110)||(9109981-9110082)
chr1 (9-110)||(19865276-19865377)
chr1 (1-110)||(28229461-28229570)
chr1 (1-110)||(46785964-46786073)
chr1 (1-110)||(46790024-46790133)
chr1 (1-109)||(18890556-18890664)
chr1 (1-109)||(22158826-22158934)
chr1 (1-93)||(41071858-41071950)
chr1 (1-67)||(32046900-32046966)
chr1 (1-65)||(9259234-9259298)
chr1 (1-65)||(9985378-9985442)
chr1 (1-110)||(12161838-12161947)
chr1 (1-110)||(23457921-23458030)
chr1 (1-64)||(13523013-13523076)
chr1 (1-110)||(20290327-20290435)
chr1 (15-65)||(48522556-48522606)
chr1 (9-65)||(12806888-12806944)
chr1 (8-67)||(41359019-41359078)
chr1 (20-65)||(7830074-7830119)
chr1 (9-65)||(13308871-13308927)
chr1 (1-65)||(52183702-52183766)
[»] scaffold0240 (1 HSPs)
scaffold0240 (1-110)||(14996-15105)
[»] chr2 (21 HSPs)
chr2 (1-106)||(7093588-7093693)
chr2 (1-110)||(12779620-12779729)
chr2 (1-110)||(21293717-21293826)
chr2 (1-110)||(43408517-43408626)
chr2 (1-110)||(44476381-44476490)
chr2 (1-109)||(15636742-15636850)
chr2 (1-108)||(13613101-13613208)
chr2 (1-110)||(13788061-13788170)
chr2 (1-110)||(28262384-28262493)
chr2 (1-110)||(37723998-37724107)
chr2 (1-110)||(41736192-41736301)
chr2 (1-110)||(32185852-32185961)
chr2 (1-110)||(23857964-23858072)
chr2 (20-107)||(2556134-2556221)
chr2 (9-67)||(14757170-14757228)
chr2 (1-67)||(32008972-32009038)
chr2 (1-65)||(8430316-8430380)
chr2 (1-65)||(26243372-26243436)
chr2 (1-53)||(37802441-37802493)
chr2 (15-65)||(35697489-35697539)
chr2 (9-110)||(44722960-44723061)
[»] scaffold0009 (1 HSPs)
scaffold0009 (6-110)||(182559-182663)
[»] scaffold0006 (2 HSPs)
scaffold0006 (1-107)||(120996-121102)
scaffold0006 (1-110)||(84680-84789)
[»] scaffold0076 (1 HSPs)
scaffold0076 (1-110)||(26507-26616)
[»] scaffold0023 (1 HSPs)
scaffold0023 (1-110)||(39709-39818)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-110)||(22235-22344)
[»] scaffold0007 (2 HSPs)
scaffold0007 (1-110)||(3766-3875)
scaffold0007 (1-110)||(202798-202907)
[»] scaffold0108 (1 HSPs)
scaffold0108 (10-108)||(12685-12783)
[»] scaffold0603 (1 HSPs)
scaffold0603 (1-110)||(5985-6094)
[»] scaffold0576 (1 HSPs)
scaffold0576 (1-110)||(9235-9344)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-110)||(43941-44050)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-110)||(173468-173578)
[»] scaffold0058 (1 HSPs)
scaffold0058 (9-65)||(74592-74648)
[»] scaffold0035 (1 HSPs)
scaffold0035 (9-110)||(74723-74824)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-110)||(439987-440096)
[»] scaffold0717 (1 HSPs)
scaffold0717 (9-65)||(970-1026)
[»] scaffold0087 (1 HSPs)
scaffold0087 (9-65)||(37838-37894)
[»] scaffold0047 (1 HSPs)
scaffold0047 (9-65)||(58614-58670)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 24138956 - 24138682
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||||  ||||| ||||||||||||       | |||| ||||| ||||||| |||||    
T  24138956 aaaacgtaaaatctctctctaattccgtcactaaattttgcgaccaagcaatttgtgagaaatttcattttttccgtcaccaattttcctcgctaatttt 24138857  T
Q  101 actttttcta--------cgtagggcttgttagcatatatgttctacatgtatataccttcactat--tttgaggggtgctatactattcatttgaaaat 190  Q
     |||||||||        ||||||||||||||||||||||||||||||||||||  ||||||||||  |||||| ||||||||||||||   ||||||||    
T  24138856 gctttttctaatagtgtacgtagggcttgttagcatatatgttctacatgtata--ccttcactatattttgagtggtgctatactatt---ttgaaaat 24138762  T
Q  191 atgttgaattaacaacttaatttgatgtttttgttaggagggattgaactcatatagggaagattcacaagttcaagagg 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24138761 atgttgaattaacaacttaatttgatgtttttgttaggagggattgaactcatatagggaagattcacaagttcaagagg 24138682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 12045751 - 12045860
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||||||||||||  ||| ||||| |||||||||||||||||||||| |||||| |||| |||||||       | |||||||||||||||||| |||||    
T  12045751 aaaacgtaaaatccttctctaattccgtcactaaattttacgaccaagaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 12045850  T
Q  101 actttttcta 110  Q
     |||||||||    
T  12045851 gctttttcta 12045860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 40484068 - 40484177
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||||| ||||||||||       | |||||||||||||||||| |||||    
T  40484068 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttataagaaatttcattatttccgtcactaatttccctcgctaatttt 40484167  T
Q  101 actttttcta 110  Q
     |||||||||    
T  40484168 tctttttcta 40484177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 4125295 - 4125194
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    |||||||||| ||||| |||||||||||||| ||||||  |||||| |||| |||||||       | |||||||||||||||||| |||||||||||||    
T  4125295 aaatctctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttactttttc 4125196  T
Q  109 ta 110  Q
    ||    
T  4125195 ta 4125194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 17772083 - 17771974
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||| |||||||||||| ||||| |||||||||||||| ||| |||  ||||| |||| |||||||       | ||||||||||||||||||||||||    
T  17772083 aaaacataaaatctctctctaattccgtcactaaattttgcgatcaaggaatttttgaggaatttcattttttccgtcactaatttccctcgctgatttt 17771984  T
Q  101 actttttcta 110  Q
     |||||||||    
T  17771983 tctttttcta 17771974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 7888821 - 7888930
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||| | ||||||||||||||||||||||  ||||| |||| |||||||       | ||| |||||||||||||| |||||    
T  7888821 aaaacgtaaaatccctctctaactccgtcactaaattttacgaccaaggaatttgtgaggaatttcattttttccgtcaataatttccctcgctaatttt 7888920  T
Q  101 actttttcta 110  Q
     |||||||||    
T  7888921 gctttttcta 7888930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 16631989 - 16631880
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| ||||||||||||||  ||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  16631989 aaaacgtaaaatccctctctaattccgtcactaaattttgtgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 16631890  T
Q  101 actttttcta 110  Q
     |||||||||    
T  16631889 tctttttcta 16631880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 38837786 - 38837677
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| | |||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  38837786 aaaacgtaaaatccctctctaattccatcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 38837687  T
Q  101 actttttcta 110  Q
     |||||||||    
T  38837686 gctttttcta 38837677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 746983 - 746875
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  746983 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 746884  T
Q  101 actttttct 109  Q
     ||||||||    
T  746883 gctttttct 746875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 23975659 - 23975765
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| ||||||  |||||| |||| |||||||       | |||||||||||||||||| |||||    
T  23975659 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 23975758  T
Q  101 acttttt 107  Q
     ||||||    
T  23975759 gcttttt 23975765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 10494761 - 10494854
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgct 94  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | ||||||||||||||||||    
T  10494761 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgct 10494854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 19759062 - 19758957
Alignment:
Q  122 ttagcatatatgttctacatgtatataccttcactattttgaggggtgctatactattcatttgaaaatatgttgaattaacaacttaatttgatgtttt 221  Q
    |||| ||||| |||||||||||| |  | || |||||| |||| |||| | |||||||||||||||||||||||||||| |  |||| |||| |||||||    
T  19759062 ttagaatatacgttctacatgtaga--cttttactattatgagtggtgttttactattcatttgaaaatatgttgaattcaacacttgatttaatgtttt 19758965  T
Q  222 tgttagga 229  Q
    | ||||||    
T  19758964 tattagga 19758957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 15060997 - 15061105
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| ||||||  |||||| |||| |||||||         |||||||||||||||||| |||||    
T  15060997 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttttcggtcactaatttccctcgctaatttt 15061096  T
Q  101 actttttct 109  Q
     ||||||||    
T  15061097 gctttttct 15061105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23409004 - 23409070
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||| ||| |||||| |||| |||||||    
T  23409004 aaaacgtaaaatccctctctaattccgtcactaaattttgcgatcaagaaatttgtgaggaatttca 23409070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 31853195 - 31853145
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgag 59  Q
    |||||||||| ||||| |||||||||||||| |||||| ||||||||||||    
T  31853195 aaatctctctctaattccgtcactaaattttgcgaccataaaatttatgag 31853145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 8886966 - 8886857
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||| |||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||| ||||| ||||||| |||||    
T  8886966 aaaatgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcatttttttcgtcacaaattttcctcgctaatttt 8886867  T
Q  101 actttttcta 110  Q
     |||||||||    
T  8886866 gctttttcta 8886857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 17039746 - 17039637
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||| |||| || |||||    
T  17039746 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaattttcctcactaatttt 17039647  T
Q  101 actttttcta 110  Q
     |||||||||    
T  17039646 gctttttcta 17039637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 20959532 - 20959596
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||| ||  ||||| |||| |||||    
T  20959532 aaaacgtgaaatctctctctaattccgtcactaaattttacgactaaggaatttgtgaggaattt 20959596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 26708700 - 26708591
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||  |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       |  ||||||||||||||||| |||||    
T  26708700 aaaacgtaaaattcctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccggcactaatttccctcgctaatttt 26708601  T
Q  101 actttttcta 110  Q
     | |||||||    
T  26708600 gcattttcta 26708591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 26978434 - 26978325
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||  |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       |  ||||||||||||||||| |||||    
T  26978434 aaaacgtaaaattcctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccggcactaatttccctcgctaatttt 26978335  T
Q  101 actttttcta 110  Q
     | |||||||    
T  26978334 gcattttcta 26978325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27428127 - 27428063
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||| ||||| |||| ||||| |||||||||||||| |||||||| ||||||| || |||||    
T  27428127 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaaagaatttattagcaattt 27428063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 36716315 - 36716206
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| |||||  ||| ||||| | ||| ||||||||||||||| | ||||| |||| |||||||       |||||||||||||||||||| |||||    
T  36716315 aaaacgtgaaatccttctctaattccttcattaaattttacgaccatagaatttgtgaggaatttcattttttccatcactaatttccctcgctaatttt 36716216  T
Q  101 actttttcta 110  Q
      ||||||||    
T  36716215 gttttttcta 36716206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 5982746 - 5982779
Alignment:
Q  77 tcactaatttccctcgctgattttactttttcta 110  Q
    |||||||||||||||||||||||| |||||||||    
T  5982746 tcactaatttccctcgctgattttgctttttcta 5982779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 29727934 - 29727901
Alignment:
Q  77 tcactaatttccctcgctgattttactttttcta 110  Q
    |||||||||||||||||| |||||||||||||||    
T  29727934 tcactaatttccctcgctaattttactttttcta 29727901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 33735074 - 33735030
Alignment:
Q  15 ctctttaatttcgtcactaaattttacgaccaaaaaatttatgag 59  Q
    |||||||||| |||||||||||||| |||||||  ||||||||||    
T  33735074 ctctttaattccgtcactaaattttgcgaccaaggaatttatgag 33735030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 26415448 - 26415554
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||| |       |||||||||||||| || || |||||    
T  26415448 aaaacgtaaaatccctctttaatttcgtcactaaattttacgatcaaaaaatttgtgagaaattttattttttccatcactaatttccttctctaatttt 26415547  T
Q  101 acttttt 107  Q
    |||||||    
T  26415548 acttttt 26415554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 24605862 - 24605971
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| |||||||||| ||||| |||||||||||||| |||||||| ||||| |||| |||||||       | ||||||||||||||||||||||||    
T  24605862 aaaacgtgaaatctctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaatttcattttttccgtcactaatttccctcgctgatttt 24605961  T
Q  101 actttttcta 110  Q
     |||||||||    
T  24605962 tctttttcta 24605971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 18217853 - 18217962
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| |||||||||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  18217853 aaaacgtaaaatccctctctaatttcgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 18217952  T
Q  101 actttttcta 110  Q
     |||||||||    
T  18217953 gctttttcta 18217962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 3872302 - 3872193
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||||||||||||||||| ||||| ||||||||||||||  ||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  3872302 aaaacgtaaaatctctctctaattccgtcactaaattttgagaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 3872203  T
Q  101 actttttcta 110  Q
     |||||||||    
T  3872202 gctttttcta 3872193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 3904593 - 3904484
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||||||| ||||||  ||| |||||||       | |||||||||||||||||| |||||    
T  3904593 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaagaaatttgcgaggaatttcattttttccgtcactaatttccctcgctaatttt 3904494  T
Q  101 actttttcta 110  Q
     |||||||||    
T  3904493 gctttttcta 3904484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 6849326 - 6849217
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||||||||||||||||| ||||| |||||||||||||| |||| ||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  6849326 aaaacgtaaaatctctctctaattccgtcactaaattttgcgactaaggaatttgtgaggaatttcattttctccgtcactaatttccctcgctaatttt 6849227  T
Q  101 actttttcta 110  Q
     |||||||||    
T  6849226 gctttttcta 6849217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23750851 - 23750742
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||| |||||||| |||| ||||| ||||||||||||||||||||||  ||||| ||||||||||||       | |||||||||||||||||| |||||    
T  23750851 aaaatgtaaaatccctctctaattccgtcactaaattttacgaccaaggaatttgtgagaaatttcattttttccgtcactaatttccctcgctaatttt 23750752  T
Q  101 actttttcta 110  Q
      ||||||||    
T  23750751 gttttttcta 23750742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 31425626 - 31425517
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||| | ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  31425626 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccacagaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 31425527  T
Q  101 actttttcta 110  Q
     |||||||||    
T  31425526 gctttttcta 31425517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 2093477 - 2093368
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| |||||||||| ||||| |||||||||||||| ||| ||||   ||| |||| |||||||       | ||||||||||||||||||||||||    
T  2093477 aaaacgtcaaatctctctctaattccgtcactaaatttttcgatcaaattttttttgaggaatttcattttttccgtcactaatttccctcgctgatttt 2093378  T
Q  101 actttttcta 110  Q
     |||||||||    
T  2093377 tctttttcta 2093368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 21917449 - 21917340
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | ||||||||||||||| || |||||    
T  21917449 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcactaatttt 21917350  T
Q  101 actttttcta 110  Q
     |||||||||    
T  21917349 gctttttcta 21917340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 22486418 - 22486527
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  22486418 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 22486517  T
Q  101 actttttcta 110  Q
     |||||||||    
T  22486518 gctttttcta 22486527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 47523757 - 47523656
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    ||||| |||| ||||| |||||||||||||| |||||||| ||||| |||| |||||||       | |||||||||||||||||| |||||| ||||||    
T  47523757 aaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttattttttc 47523658  T
Q  109 ta 110  Q
    ||    
T  47523657 ta 47523656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 10050951 - 10050885
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| ||||||||||||    
T  10050951 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgagaaatttca 10050885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 14786750 - 14786684
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    ||||||||||||  || ||||||| |||||||||||||| |||||||||||||| |||| |||||||    
T  14786750 aaaacgtaaaattcctttttaattccgtcactaaattttgcgaccaaaaaatttgtgaggaatttca 14786684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 1842918 - 1843027
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||  ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||| | |||||    
T  1842918 aaaacgtaaaatccctccctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgttaatttt 1843017  T
Q  101 actttttcta 110  Q
     |||||||||    
T  1843018 gctttttcta 1843027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 2650943 - 2650834
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||||||  |||||| |||| |||||||       | ||||||| ||||||| || |||||    
T  2650943 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttttccgtcactaaattccctcactaatttt 2650844  T
Q  101 actttttcta 110  Q
     |||||||||    
T  2650843 tctttttcta 2650834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 11036531 - 11036640
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| ||||||  |||||| |||| |||||||       | |||||||||||||| ||| |||||    
T  11036531 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttttccgtcactaatttcccttgctaatttt 11036630  T
Q  101 actttttcta 110  Q
     |||||||||    
T  11036631 gctttttcta 11036640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 15969822 - 15969874
Alignment:
Q  15 ctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    |||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||    
T  15969822 ctctctaattccgtcactaaattttacgaccaaagaatttgtgagaaatttca 15969874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 20174044 - 20174149
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| ||||||  |||||| |||| |||||||       | |||||||||||||||||| |||||    
T  20174044 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 20174143  T
Q  101 actttt 106  Q
     |||||    
T  20174144 gctttt 20174149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 20429489 - 20429598
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||||||||||  |||||| |||| |||||||       | |||||||||||||| | | |||||    
T  20429489 aaaacgtgaaatccctctctaattccgtcactaaattttacgaccatgaaatttgtgaggaatttcattttttccgtcactaatttcccttgttaatttt 20429588  T
Q  101 actttttcta 110  Q
     |||||||||    
T  20429589 gctttttcta 20429598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 27806050 - 27806151
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    ||||| |||| ||||| ||||||||||||||||||||||  ||||| |||| |||||||       | |||||||||| ||||||| ||||| |||||||    
T  27806050 aaatccctctctaattccgtcactaaattttacgaccaaggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttttc 27806149  T
Q  109 ta 110  Q
    ||    
T  27806150 ta 27806151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 28800910 - 28801011
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    ||||| |||| ||||| |||||||||||||| ||||||| |||||| |||| |||||||         |||||||||||||||||| ||||| |||||||    
T  28800910 aaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttctgtcactaatttccctcgctaattttgctttttc 28801009  T
Q  109 ta 110  Q
    ||    
T  28801010 ta 28801011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 37135400 - 37135291
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||||||||||   |||||||||| |||||||       | ||||||||||||||| || |||||    
T  37135400 aaaacgtgaaatccctctctaattccgtcactaaattttacgaccatggaatttatgaggaatttcattttttccgtcactaatttccctcactaatttt 37135301  T
Q  101 actttttcta 110  Q
      ||||||||    
T  37135300 gttttttcta 37135291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 25777227 - 25777169
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgag 59  Q
    ||||||| ||||| |||| ||||||| |||||||||||||||| |||||||||| ||||    
T  25777227 aaaacgtgaaatcactctctaatttcatcactaaattttacgatcaaaaaatttgtgag 25777169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 816306 - 816242
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||| ||||| |||| ||||| |||||||||||||| |||||||| ||||| ||||| ||||    
T  816306 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgagagattt 816242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 33427728 - 33427780
Alignment:
Q  15 ctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    |||| ||||| ||||||||||||||||||||||| ||||| |||| |||||||    
T  33427728 ctctctaattccgtcactaaattttacgaccaaagaatttgtgaggaatttca 33427780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 15330312 - 15330254
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    |||| ||||| |||||  ||||||||||||| ||||||| |||||| ||||||||||||    
T  15330312 aaatttctctctaattctgtcactaaattttgcgaccaagaaatttgtgagaaatttca 15330254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 45664792 - 45664858
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||| |||  ||||| |||| |||||||    
T  45664792 aaaacgtaaaatccctctctaattccgtcactaaattttgcgatcaaggaatttgtgaggaatttca 45664858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 4514797 - 4514853
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||| |||| ||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  4514797 aaatccctctctaattccttcactaaattttgcgaccaaagaatttgtgagaaattt 4514853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 10222744 - 10222681
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||||||||| |||| |||||  |||| |||||||| ||| | |||||||||||||||||||    
T  10222744 aaaacgtaaaatccctctctaattctgtcattaaattttgcgatc-aaaaatttatgagaaattt 10222681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31042275 - 31042339
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||| ||||| |||| |||||  ||||||||||||| |||||||  ||||| ||||||||||    
T  31042275 aaaacgtgaaatccctctctaattctgtcactaaattttgcgaccaaggaatttgtgagaaattt 31042339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 36993852 - 36993908
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    |||||||| | ||||| ||||||||||||||||||| || |||||| |||| |||||    
T  36993852 aaatctctttctaattccgtcactaaattttacgactaagaaatttgtgaggaattt 36993908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 7529 - 7638
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||||||| ||||||||||| |||||||       | |||||||||||||||||| |||||    
T  7529 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaagaaatttatgaggaatttcatattttccgtcactaatttccctcgctaatttt 7628  T
Q  101 actttttcta 110  Q
     |||||||||    
T  7629 gctttttcta 7638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 3823155 - 3823264
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||| ||||| ||||||||||||       | |||||||||||||||||| |||||    
T  3823155 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgagaaatttcattttttccgtcactaatttccctcgctaatttt 3823254  T
Q  101 actttttcta 110  Q
     |||||||||    
T  3823255 gctttttcta 3823264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 8555419 - 8555310
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||| |||||||||||| ||||| |||||||||||||| |||||||| ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  8555419 aaaacataaaatctctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 8555320  T
Q  101 actttttcta 110  Q
     |||||||||    
T  8555319 gctttttcta 8555310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 27869268 - 27869369
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    |||||||||| ||||| |||||||||||||| |||||||| ||||| |||| |||||||       |||||||||||||||||||| ||||| |||||||    
T  27869268 aaatctctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaatttcattttttccatcactaatttccctcgctaattttgctttttc 27869367  T
Q  109 ta 110  Q
    ||    
T  27869368 ta 27869369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 30467069 - 30466960
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||||||||||||||||| ||||| | |||||||||||| ||||||| ||||||||||| ||||| |       | |||||||||||||||||| |||||    
T  30467069 aaaacgtaaaatctctctctaattccatcactaaattttgcgaccaagaaatttatgaggaattttaatttttccgtcactaatttccctcgctaatttt 30466970  T
Q  101 actttttcta 110  Q
     |||||||||    
T  30466969 gctttttcta 30466960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 21219352 - 21219246
Alignment:
Q  4 acgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttact 103  Q
    |||| ||||| |||| ||||| | |||||||||||| ||||||||||||||||||| |||||||       | ||||||||||| |||||||||||| ||    
T  21219352 acgtgaaatccctctctaattccatcactaaattttgcgaccaaaaaatttatgagtaatttcattttttccgtcactaatttctctcgctgatttttct 21219253  T
Q  104 ttttcta 110  Q
    |||||||    
T  21219252 ttttcta 21219246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 16062054 - 16061945
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||| ||||| |||||| | ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  16062054 aaaacgtgaaatcactctctaattccgtcactacattttgcgaccatagaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 16061955  T
Q  101 actttttcta 110  Q
    ||||||||||    
T  16061954 actttttcta 16061945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 17810328 - 17810429
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    ||||| |||| |||||||||||||||||||| ||||||| |||||| |||| |||||||       | |||||||||| ||||||| ||||| |||||||    
T  17810328 aaatccctctctaatttcgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttttc 17810427  T
Q  109 ta 110  Q
    ||    
T  17810428 ta 17810429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 19240889 - 19240998
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||  |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  19240889 aaaacgtaaaattcctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 19240988  T
Q  101 actttttcta 110  Q
     |||||||||    
T  19240989 gctttttcta 19240998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 19256234 - 19256343
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||||||| |||||| |||| ||||| |       | |||||||||||||||| | |||||    
T  19256234 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaattttattttttccgtcactaatttccctcgttaatttt 19256333  T
Q  101 actttttcta 110  Q
     |||||||||    
T  19256334 gctttttcta 19256343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 19314073 - 19314182
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||  |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  19314073 aaaacgtaaaattcctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 19314172  T
Q  101 actttttcta 110  Q
     |||||||||    
T  19314173 gctttttcta 19314182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23752401 - 23752292
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||| |||||||| |||| ||||| |||||||||||||| |||||||  ||||| ||||||||||||       | |||||||| ||||||||| |||||    
T  23752401 aaaatgtaaaatcactctctaattccgtcactaaattttgcgaccaaggaatttgtgagaaatttcattttttccgtcactaatatccctcgctaatttt 23752302  T
Q  101 actttttcta 110  Q
     |||||||||    
T  23752301 gctttttcta 23752292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 24193303 - 24193202
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    |||||||||| ||||| |||||||||||||| ||||||  |||||| |||| |||||||       | |||||||||||||||||| ||||| |||||||    
T  24193303 aaatctctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 24193204  T
Q  109 ta 110  Q
    ||    
T  24193203 ta 24193202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 24576131 - 24576030
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    |||||||||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| ||||| |||||||    
T  24576131 aaatctctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 24576032  T
Q  109 ta 110  Q
    ||    
T  24576031 ta 24576030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 43431674 - 43431565
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| |||||||||||||||||||| | |||||  ||||| |||| |||||||       | ||||||||||||||| || |||||    
T  43431674 aaaacgtaaaatccctctctaatttcgtcactaaattttgcaaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcactaatttt 43431575  T
Q  101 actttttcta 110  Q
     |||||||||    
T  43431574 tctttttcta 43431565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 11938767 - 11938875
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  11938767 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttca-tttttccgtcactaatttccctcgctaatttt 11938865  T
Q  101 actttttcta 110  Q
     |||||||||    
T  11938866 gctttttcta 11938875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 5670284 - 5670175
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||| ||       | |||||||||||||||| |||||||    
T  5670284 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaattccattttttccgtcactaatttccctcgttgatttt 5670185  T
Q  101 actttttcta 110  Q
      ||||||||    
T  5670184 gttttttcta 5670175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5879226 - 5879290
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||||||||  |||| ||||| |||||||||||||||||||||| |||||| |||| |||||    
T  5879226 aaaacgtaaaatgcctctctaattccgtcactaaattttacgaccaagaaatttgtgaggaattt 5879290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 21350500 - 21350609
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||||||||||||  ||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||| ||| |||||    
T  21350500 aaaacgtaaaatccatctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttcccttgcttatttt 21350599  T
Q  101 actttttcta 110  Q
     |||||||||    
T  21350600 gctttttcta 21350609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 32247931 - 32248040
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| |||||| | ||||| |||| |||||||       | |||||||||||||||| | |||||    
T  32247931 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatagaatttgtgaggaatttcattttttccgtcactaatttccctcgttaatttt 32248030  T
Q  101 actttttcta 110  Q
     |||||||||    
T  32248031 gctttttcta 32248040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 6817076 - 6817142
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    |||| ||||||||||||| ||||| ||||||||||||||  |||||| |||||| |||| |||||||    
T  6817076 aaaatgtaaaatctctctctaattccgtcactaaattttgtgaccaagaaatttgtgaggaatttca 6817142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 24636674 - 24636740
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||| ||| |||||| |||| |||||||    
T  24636674 aaaacgtaaaatccctctctaattccgtcactaaattttgcgatcaagaaatttgtgaggaatttca 24636740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 30687958 - 30688067
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||| |||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||         ||||| |||||||||||| |||||    
T  30687958 aaaatgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttcggtcactgatttccctcgctaatttt 30688057  T
Q  101 actttttcta 110  Q
     |||||||||    
T  30688058 gctttttcta 30688067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 19493763 - 19493704
Alignment:
Q  8 aaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    |||||| |||| ||||| |||||||||||||| |||||||| ||||| |||| |||||||    
T  19493763 aaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaatttca 19493704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 25273442 - 25273334
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| |||||  ||||||||||||| |||||||| ||||| |||| | |||||       | |||||||||||||||| | |||||    
T  25273442 aaaacgtaaaatccctctctaattctgtcactaaattttgcgaccaaagaatttgtgaggactttca-ttttttcgtcactaatttccctcgttaatttt 25273344  T
Q  101 actttttcta 110  Q
     |||||||||    
T  25273343 gctttttcta 25273334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 26399122 - 26399017
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| |||||||  ||||| ||||| |||| |       | ||||||||||||||| || |||||    
T  26399122 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaacgaatttgtgagagattttattttttccgtcactaatttccctccct-atttt 26399024  T
Q  101 acttttt 107  Q
    |||||||    
T  26399023 acttttt 26399017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 17103972 - 17103916
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||| |||| ||||| |||||||||||||| |||||||| ||||| |||| |||||    
T  17103972 aaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaattt 17103916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 17824723 - 17824667
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||| |||| ||||| |||||||||||||| |||||||| ||||| |||| |||||    
T  17824723 aaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaattt 17824667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 31399623 - 31399514
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| |||||  ||| ||||| |||||||||||||| ||||||   ||||| |||| |||||||       |||||||||||||||||| | |||||    
T  31399623 aaaacgtgaaatccatctctaattccgtcactaaattttgcgaccatggaatttgtgaggaatttcatttttttcatcactaatttccctcgttaatttt 31399524  T
Q  101 actttttcta 110  Q
      ||||||||    
T  31399523 gttttttcta 31399514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 5360433 - 5360542
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||| ||||| |       | |||||||||||||||||| |||||    
T  5360433 aaaacgtaaaatctctctctaattccgtcactaaattttgcgaccaaaaaatttgtgaggaattttattttttccgtcactaatttccctcgctaatttt 5360532  T
Q  101 actttttcta 110  Q
     |||||||||    
T  5360533 gctttttcta 5360542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 5192304 - 5192195
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||||||| ||||| |||| |||||||       | |||||||||| ||||||| |||||    
T  5192304 aaaacgtaaaatccctctctaattccgtcactaaattttacgaccaaagaatttgtgaggaatttcattttttccttcactaattttcctcgctaatttt 5192205  T
Q  101 actttttcta 110  Q
     |||||||||    
T  5192204 gctttttcta 5192195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 12160961 - 12160853
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||| ||||||| |||| |||||||||||||||||||| ||| |||||||||| |||| |||||||       | |||||||||||||||||| |||||    
T  12160961 aaaacataaaatccctctctaatttcgtcactaaatttt-cgatcaaaaaatttgtgaggaatttcattttttacgtcactaatttccctcgctaatttt 12160863  T
Q  101 actttttcta 110  Q
    ||||||||||    
T  12160862 actttttcta 12160853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 28364935 - 28365044
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||| ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  28364935 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 28365034  T
Q  101 actttttcta 110  Q
     |||||||||    
T  28365035 gctttttcta 28365044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 25398026 - 25398135
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  25398026 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 25398125  T
Q  101 actttttcta 110  Q
     |||||||||    
T  25398126 tctttttcta 25398135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 21691611 - 21691504
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaa-tttccctcgctgattt 99  Q
    ||||||| ||||| |||| |||||||||||||||||||| |||||||| ||||| |||||||||| |       ||||||||| |||||||| || ||||    
T  21691611 aaaacgtgaaatccctctctaatttcgtcactaaattttgcgaccaaagaatttgtgagaaattttatttttttcatcactaattttccctctctaattt 21691512  T
Q  100 tacttttt 107  Q
    ||||||||    
T  21691511 tacttttt 21691504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 495742 - 495633
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||| ||| |||||    
T  495742 aaaacgtaaaatcactctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttcccttgctaatttt 495643  T
Q  101 actttttcta 110  Q
     |||||||||    
T  495642 gctttttcta 495633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 9892987 - 9893096
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  9892987 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 9893086  T
Q  101 actttttcta 110  Q
     |||||||||    
T  9893087 gctttttcta 9893096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 20182169 - 20182278
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| ||| ||  |||||| |||| |||||||       | |||||||||||||||||| |||||    
T  20182169 aaaacgtgaaatccctctctaattccgtcactaaattttgcgatcatgaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 20182268  T
Q  101 actttttcta 110  Q
    ||||||||||    
T  20182269 actttttcta 20182278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 22153822 - 22153713
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| ||| ||  |||||| |||| |||||||       | |||||||||||||||||| |||||    
T  22153822 aaaacgtgaaatccctctctaattccgtcactaaattttgcgatcatgaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 22153723  T
Q  101 actttttcta 110  Q
    ||||||||||    
T  22153722 actttttcta 22153713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 22579464 - 22579355
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| |||||| | ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  22579464 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatagaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 22579365  T
Q  101 actttttcta 110  Q
     |||||||||    
T  22579364 gctttttcta 22579355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 20692926 - 20692871
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttat 56  Q
    ||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||    
T  20692926 aaaacgtaaaatccctctctaatttcgtcactaaattttgcgaccaaaaaacttat 20692871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 3673248 - 3673182
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    |||| ||||||| | ||| ||||| ||||||||||||||||||||||||||||| |||| |||||||    
T  3673248 aaaatgtaaaatttttctctaattccgtcactaaattttacgaccaaaaaatttgtgaggaatttca 3673182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 12499240 - 12499306
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    ||||||||||||| |||| ||| | |||||||||||||| |||||||||||||| |||| |||||||    
T  12499240 aaaacgtaaaatccctctctaactccgtcactaaattttgcgaccaaaaaatttgtgaggaatttca 12499306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 12506569 - 12506635
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    ||||||||||||| |||| ||| | |||||||||||||| |||||||||||||| |||| |||||||    
T  12506569 aaaacgtaaaatccctctctaactccgtcactaaattttgcgaccaaaaaatttgtgaggaatttca 12506635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 12509661 - 12509595
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    ||||||||||||| |||| ||| | |||||||||||||| |||||||||||||| |||| |||||||    
T  12509661 aaaacgtaaaatccctctctaactccgtcactaaattttgcgaccaaaaaatttgtgaggaatttca 12509595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 13145026 - 13145092
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    ||||||| |||||||||||||||| |||||||||||||| |||||||  ||||| |||| |||||||    
T  13145026 aaaacgtgaaatctctctttaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttca 13145092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 30834073 - 30833966
Alignment:
Q  3 aacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttac 102  Q
    ||||||||||| |||| |||||  |||| |||||||| |||||||||||||  |||| |||||||       | |||||||||||||||||| ||||| |    
T  30834073 aacgtaaaatccctctctaattctgtcattaaattttgcgaccaaaaaattagtgaggaatttcattttttccgtcactaatttccctcgctaattttgc 30833974  T
Q  103 tttttcta 110  Q
    ||||||||    
T  30833973 tttttcta 30833966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 1939349 - 1939248
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    ||||| |||| ||||| ||||| |||||||| |||||||||||||| |||| |||||||         |||||||||||||||||| ||||| |||||||    
T  1939349 aaatccctctctaattccgtcattaaattttgcgaccaaaaaatttgtgaggaatttcattttttcggtcactaatttccctcgctaattttgctttttc 1939250  T
Q  109 ta 110  Q
    ||    
T  1939249 ta 1939248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 2669333 - 2669442
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||  |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||| | |||||    
T  2669333 aaaacgtaaaattcctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcatttttttcgtcactaatttccctcgttaatttt 2669432  T
Q  101 actttttcta 110  Q
     |||||||||    
T  2669433 gctttttcta 2669442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 5250195 - 5250272
Alignment:
Q  33 aaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttcta 110  Q
    ||||||| ||||||| ||||||||||| |||||||       | |||||||||||||||||||||||| |||||||||    
T  5250195 aaattttgcgaccaagaaatttatgaggaatttcattttttccgtcactaatttccctcgctgatttttctttttcta 5250272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 9885275 - 9885376
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    ||||| ||||||||||| ||||||||||||| | ||||| |||||| ||||| |||| |       | ||||||||||||||| |||||||| |||||||    
T  9885275 aaatccctctttaattttgtcactaaattttgcaaccaacaaatttgtgagagattttattttttccgtcactaatttccctccctgattttgctttttc 9885374  T
Q  109 ta 110  Q
    ||    
T  9885375 ta 9885376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 12845027 - 12845091
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||| |||||||||| ||||| |||||||||||||| |||||||| ||||| |||| |||||    
T  12845027 aaaacgtgaaatctctctctaattccgtcactaaattttgcgaccaaagaatttgtgagcaattt 12845091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 15364573 - 15364464
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||||||||||||  ||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | ||||||||||||||| || |||||    
T  15364573 aaaacgtaaaatccttctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcactaatttt 15364474  T
Q  101 actttttcta 110  Q
     |||||||||    
T  15364473 gctttttcta 15364464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 21990289 - 21990181
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||| |||| |||||||       | ||| |||||||||||||| |||||    
T  21990289 aaaacgtaaaatccctctctaattccgtcactaatttttgcgaccaagaaatttgtgaggaatttca-tttttccgtcattaatttccctcgctaatttt 21990191  T
Q  101 actttttcta 110  Q
     |||||||||    
T  21990190 gctttttcta 21990181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 343678 - 343612
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    ||||||||||||| |||| |||||  ||||||||| ||| |||||||||||||| |||| |||||||    
T  343678 aaaacgtaaaatccctctctaattctgtcactaaaatttgcgaccaaaaaatttgtgaggaatttca 343612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 23281810 - 23281900
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctc 91  Q
    ||||||| ||||| |||| ||||| |||||||||||||| |||||| ||||||| |||| ||||| |       |||||||||||||||||    
T  23281810 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccataaaatttgtgaggaattttattttttccatcactaatttccctc 23281900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 11049858 - 11049757
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    |||||||||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||| ||| |||||  ||||||    
T  11049858 aaatctctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttcccttgctaattttgttttttc 11049759  T
Q  109 ta 110  Q
    ||    
T  11049758 ta 11049757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 14772693 - 14772749
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    |||||||||| ||||| ||||||||||||||||||||||  ||||| |||| |||||    
T  14772693 aaatctctctctaattccgtcactaaattttacgaccaaggaatttgtgaggaattt 14772749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 26939619 - 26939720
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    ||||| |||| ||||| |||||||||||||| ||||||| |||||| |||| |||||||         |||||||||||||||  | |||||||||||||    
T  26939619 aaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttttgtcactaatttccctcagtaattttactttttc 26939718  T
Q  109 ta 110  Q
    ||    
T  26939719 ta 26939720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 19175892 - 19175826
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    |||| |||||||  |||| ||||| |||||||||||||| ||||||| |||||| |||| |||||||    
T  19175892 aaaatgtaaaattcctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttca 19175826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 11530268 - 11530313
Alignment:
Q  20 taatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||| ||||||||||||||||||  || |||||||||||||||||    
T  11530268 taattccgtcactaaattttacgattaagaaatttatgagaaattt 11530313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 17919565 - 17919626
Alignment:
Q  6 gtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    |||||||| |||| ||||| |||||||||||||| |||||||  |||||||||  |||||||    
T  17919565 gtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttatgatgaatttca 17919626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 38619869 - 38619978
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||| |||||||       | ||| |||||||||||||| |||||    
T  38619869 aaaacgtaaaatccctctctaattccgtcactaaattttacgaccaaagaatttatgaggaatttcattttttccgtcattaatttccctcgctaatttt 38619968  T
Q  101 actttttcta 110  Q
     |||||||||    
T  38619969 gctttttcta 38619978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 36689699 - 36689807
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||| | |||||    
T  36689699 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaaaaaatttatgagaaatttcattttttccatcactaatttccctcgttaatttt 36689798  T
Q  101 actttttct 109  Q
      |||||||    
T  36689799 gttttttct 36689807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 4627193 - 4627084
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||| ||||||||||||| |||||||||||||||||||||||| ||| |||||| |||| |||||||       | ||| |||||||||||||| |||||    
T  4627193 aaaatgtaaaatctctctctaatttcgtcactaaattttacgatcaagaaatttgtgaggaatttcattttttccgtcattaatttccctcgctaatttt 4627094  T
Q  101 actttttcta 110  Q
     |||||||||    
T  4627093 gctttttcta 4627084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 19839201 - 19839310
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| ||||||||||||       | |||||||||||||||||| |||||    
T  19839201 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgagaaatttcattttttccgtcactaatttccctcgctaatttt 19839300  T
Q  101 actttttcta 110  Q
     |||||||||    
T  19839301 gctttttcta 19839310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 25026579 - 25026688
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||||||||||||||||| ||||| |||||||||||||| |||| ||  ||||| ||||||||||||       | ||||||||||||||| || |||||    
T  25026579 aaaacgtaaaatctctctctaattccgtcactaaattttgcgactaaggaatttgtgagaaatttcattttttccgtcactaatttccctcactaatttt 25026678  T
Q  101 actttttcta 110  Q
    ||||||||||    
T  25026679 actttttcta 25026688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 9238740 - 9238634
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||||||||||| ||||| ||||| |||||||||||||| ||||||| |||||| |||| |||||||       | |||||||||||||||||| |||||    
T  9238740 aaaacgtaaaatttctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 9238641  T
Q  101 acttttt 107  Q
     ||||||    
T  9238640 gcttttt 9238634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 4586873 - 4586764
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||||||| |||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  4586873 aaaacgtaaaatccctctctaattccgtcactaaattttacgatcaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 4586774  T
Q  101 actttttcta 110  Q
     |||||||||    
T  4586773 gctttttcta 4586764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 5473871 - 5473980
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||  ||||  |||| |||||||       | |||||||||||||||||| |||||    
T  5473871 aaaacgtaaaatccctctttaattccgtcactaaattttgcgaccaaggaattggtgaggaatttcatttttcccgtcactaatttccctcgctaatttt 5473970  T
Q  101 actttttcta 110  Q
     |||||||||    
T  5473971 gctttttcta 5473980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 7112061 - 7111952
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||| |||||||| |||| ||||| |||||||||||||| ||||||| |||||| |||| |||||||       | |||||||||||||||||| |||||    
T  7112061 aaaatgtaaaatccctctataattccgtcactaaatttttcgaccaagaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 7111962  T
Q  101 actttttcta 110  Q
     |||||||||    
T  7111961 gctttttcta 7111952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 9670594 - 9670485
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||  |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  9670594 aaaacgtaaaattcctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 9670495  T
Q  101 actttttcta 110  Q
     |||||||||    
T  9670494 tctttttcta 9670485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 16915399 - 16915500
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    |||||||||| |||||| ||||||||||||| ||||||| |||||| ||||| |||| |       |||||||||||| |||| |||||||| |||||||    
T  16915399 aaatctctctctaattttgtcactaaattttgcgaccaacaaatttgtgagagattttattttttccatcactaattttcctccctgattttgctttttc 16915498  T
Q  109 ta 110  Q
    ||    
T  16915499 ta 16915500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 30269103 - 30268994
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||| ||||||||||||| ||||| |||||||||||||| |||||||| |||||  ||| |||||||       | ||||| |||||||||||| |||||    
T  30269103 aaaatgtaaaatctctctctaattccgtcactaaattttgcgaccaaataatttgcgaggaatttcattttttccgtcactgatttccctcgctaatttt 30269004  T
Q  101 actttttcta 110  Q
     |||||||||    
T  30269003 gctttttcta 30268994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 30283086 - 30283195
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||| ||||||||||||| ||||| |||||||||||||| |||||||| |||||  ||| |||||||       | ||||| |||||||||||| |||||    
T  30283086 aaaatgtaaaatctctctctaattccgtcactaaattttgcgaccaaataatttgcgaggaatttcattttttccgtcactgatttccctcgctaatttt 30283185  T
Q  101 actttttcta 110  Q
     |||||||||    
T  30283186 gctttttcta 30283195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 32175852 - 32175743
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||||||| |||||| |||| ||||| |       | |||||||||||||||| | |||||    
T  32175852 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaattttattttttccgtcactaatttccctcgttaatttt 32175753  T
Q  101 actttttcta 110  Q
     |||||||||    
T  32175752 gctttttcta 32175743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 38645772 - 38645881
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||| | |||||||||||||| |||||||| ||||| |||| |||||||       | ||| |||||||||||||| |||||    
T  38645772 aaaacgtaaaatccctctctaactccgtcactaaattttgcgaccaaagaatttgtgaggaatttcattttttccgtcaataatttccctcgctaatttt 38645871  T
Q  101 actttttcta 110  Q
     |||||||||    
T  38645872 gctttttcta 38645881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 30568114 - 30568006
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||| | ||||| |||| |||||||       | ||||||||||| |||||| |||||    
T  30568114 aaaacgtaaaatctctctctaattccgtcattaaattttacgaccatagaatttgtgaggaatttcattttttccgtcactaatttcgctcgctaatttt 30568015  T
Q  101 actttttct 109  Q
      |||||||    
T  30568014 gttttttct 30568006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 14944768 - 14944834
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||||||| |||||| |||| |||||||    
T  14944768 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttca 14944834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 55309328 - 55309218
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca-nnnnnnncatcactaatttccctcgctgattt 99  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||        | |||||||||||||||||| ||||    
T  55309328 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcatttttttccgtcactaatttccctcgctaattt 55309229  T
Q  100 tactttttcta 110  Q
    | |||||||||    
T  55309228 tgctttttcta 55309218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 13028931 - 13028822
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||||||| |||||| |||| |||| ||       | |||||||||| ||||||| | |||    
T  13028931 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaattgcattttttccgtcactaattttcctcgctaagttt 13028832  T
Q  101 actttttcta 110  Q
     |||||||||    
T  13028831 gctttttcta 13028822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 19680539 - 19680430
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||||||  |||||| |||| |||||||       | ||||||| ||||||| || |||||    
T  19680539 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttttccgtcactaaattccctcactaatttt 19680440  T
Q  101 actttttcta 110  Q
     |||||||||    
T  19680439 tctttttcta 19680430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 33914089 - 33914145
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||| |||| ||||| |||||||||||||| ||||||||||||||||||| |||||    
T  33914089 aaatccctctctaattccgtcactaaattttgcgaccaaaaaatttatgaggaattt 33914145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 45532694 - 45532585
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| ||||| |||||||| ||| ||| |||||| |||| |||||||       | |||||||||||||||| | |||||    
T  45532694 aaaacgtaaaatccctctctaattccgtcattaaattttgcgatcaagaaatttgtgaggaatttcattttttccgtcactaatttccctcgttaatttt 45532595  T
Q  101 actttttcta 110  Q
     |||||||||    
T  45532594 gctttttcta 45532585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 54539308 - 54539417
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||||||||| |||||||||||||| |||| ||  ||||| |||| |||||||       | |||||||||| ||| ||| |||||    
T  54539308 aaaacgtaaaatcactctttaattgcgtcactaaattttgcgactaaggaatttgtgaggaatttcattttttccgtcactaattttccttgctaatttt 54539407  T
Q  101 actttttcta 110  Q
     |||||||||    
T  54539408 gctttttcta 54539417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 18051861 - 18051969
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| |||||   |||||| ||||||||||||       | ||||||||||||||| || |||||    
T  18051861 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccgtgaaatttgtgagaaatttcattttttccgtcactaatttccctcactaatttt 18051960  T
Q  101 actttttct 109  Q
     ||||||||    
T  18051961 gctttttct 18051969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 18744185 - 18744119
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    ||||||| ||||| |||| ||||| ||||||||||||||| |||||  |||||| ||||||||||||    
T  18744185 aaaacgtgaaatccctctctaattccgtcactaaattttatgaccatgaaatttgtgagaaatttca 18744119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 39234964 - 39235026
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||| ||||||||||  ||||| || |||||||||| |||||||||||||| ||||||||||    
T  39234964 aaaacgtgaaatctctct--aattttgttactaaattttgcgaccaaaaaatttgtgagaaattt 39235026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 27040140 - 27040031
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| ||||||  |||||| |||| |||||         | |||||||||||||||||| |||||    
T  27040140 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaattttcttttttccgtcactaatttccctcgctaatttt 27040041  T
Q  101 actttttcta 110  Q
     |||||||||    
T  27040040 gctttttcta 27040031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 22156708 - 22156650
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    ||||| |||| ||||| |||||||||||||| |||||||  ||||| ||||||||||||    
T  22156708 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgagaaatttca 22156650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 18714924 - 18714988
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||||||||| |||| ||||| ||||||||||||||  ||||||  ||||| |||| |||||    
T  18714924 aaaacgtaaaatccctctctaattccgtcactaaattttgagaccaaggaatttgtgaggaattt 18714988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 25147751 - 25147807
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||| |||| ||||| |||||||||||||| |||||||| ||||| |||| |||||    
T  25147751 aaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaattt 25147807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30508009 - 30508073
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    |||| |||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||    
T  30508009 aaaatgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaattt 30508073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 46286344 - 46286280
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||| ||||| |||| ||||| |||||||||||||| ||||||  |||||| |||| |||||    
T  46286344 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaattt 46286280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 11915778 - 11915887
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||||||| ||||||||||| |||||||       | |||||||||||||||||| |||||    
T  11915778 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaagaaatttatgaggaatttcatattttccgtcactaatttccctcgctaatttt 11915877  T
Q  101 actttttcta 110  Q
     |||||||||    
T  11915878 gctttttcta 11915887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 19269979 - 19269870
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  19269979 aaaacgtaaaatccctctttaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 19269880  T
Q  101 actttttcta 110  Q
     |||||||||    
T  19269879 gctttttcta 19269870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27449108 - 27449217
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||| ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  27449108 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 27449207  T
Q  101 actttttcta 110  Q
     |||||||||    
T  27449208 gctttttcta 27449217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 29236064 - 29236173
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||||||| || ||| ||||||||||||       | |||||||||||||||||| |||||    
T  29236064 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaagaattttgtgagaaatttcattttttccgtcactaatttccctcgctaatttt 29236163  T
Q  101 actttttcta 110  Q
     |||||||||    
T  29236164 gctttttcta 29236173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 18091662 - 18091556
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||| ||||||| |||| ||||| |||||||||||||| |||||||||||||| |||| |||||||       | |||||||||||||||||| |||||    
T  18091662 aaaacataaaatccctctctaattccgtcactaaattttgcgaccaaaaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 18091563  T
Q  101 acttttt 107  Q
     ||||||    
T  18091562 gcttttt 18091556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 1628235 - 1628344
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||||||||||||||||||||||| ||  |||||||||| ||||| |       ||||| ||||||||||| || |||||    
T  1628235 aaaacgtgaaatccctctctaatttcgtcactaaattttacgactaaggaatttatgaggaattttattttttccatcattaatttccctccctaatttt 1628334  T
Q  101 actttttcta 110  Q
    ||||||||||    
T  1628335 actttttcta 1628344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 7623638 - 7623537
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    ||||| |||| ||||| |||||||||||||| |||||||| ||| | ||||||||||||       | |||||||||||||||||||||||| |||||||    
T  7623638 aaatccctctctaattccgtcactaaattttgcgaccaaagaatctgtgagaaatttcattttttccgtcactaatttccctcgctgatttttctttttc 7623539  T
Q  109 ta 110  Q
    ||    
T  7623538 ta 7623537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 8428199 - 8428300
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    |||||||||| ||||| ||||||||||||||||||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||| ||||||    
T  8428199 aaatctctctctaattccgtcactaaattttacgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttattttttc 8428298  T
Q  109 ta 110  Q
    ||    
T  8428299 ta 8428300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 18380044 - 18380153
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||| |||||||| |||||||||| |||||||||||||||||| ||| |||||| |||  |||||||       | ||||| |||||||||||| |||||    
T  18380044 aaaatgtaaaatccctctttaattccgtcactaaattttacgatcaagaaatttgtgaagaatttcattttttccgtcactgatttccctcgctaatttt 18380143  T
Q  101 actttttcta 110  Q
    ||||||||||    
T  18380144 actttttcta 18380153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 19223469 - 19223578
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||||||  ||||| |||| |||||||       | |||| ||||||||||||| |||||    
T  19223469 aaaacgtaaaatccctctctaattccgtcactaaattttacgaccaaggaatttgtgaggaatttcattttttccgtcaccaatttccctcgctaatttt 19223568  T
Q  101 actttttcta 110  Q
     |||||||||    
T  19223569 gctttttcta 19223578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 25882598 - 25882699
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    ||||| |||| ||||| ||||||||||||||||||||||| ||||| |||| |||||||       | |||||||||||||||||| ||||| |||||||    
T  25882598 aaatccctctctaattccgtcactaaattttacgaccaaagaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 25882697  T
Q  109 ta 110  Q
    ||    
T  25882698 ta 25882699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 48404880 - 48404989
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  48404880 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 48404979  T
Q  101 actttttcta 110  Q
     |||||||||    
T  48404980 gctttttcta 48404989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 29704147 - 29704041
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||||||||| |||||||||||||| ||| || ||||||| |||| |||||||       | |||||||||||||||||| |||||    
T  29704147 aaaacgtgaaatccctctttaattccgtcactaaattttgcgatcataaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 29704048  T
Q  101 acttttt 107  Q
     ||||||    
T  29704047 gcttttt 29704041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 1745602 - 1745497
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  1745602 aaaacgtaaaatctctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttca-tttttccgtcactaatttccctcgctaatttt 1745504  T
Q  101 acttttt 107  Q
     ||||||    
T  1745503 gcttttt 1745497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 5260957 - 5261066
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | ||||||||||||||| || |||||    
T  5260957 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcactaatttt 5261056  T
Q  101 actttttcta 110  Q
     |||||||||    
T  5261057 gctttttcta 5261066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 13905153 - 13905044
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||||||| |||||| |||| |||||||       | ||||||||||| ||| || |||||    
T  13905153 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccgtcactaatttcgctctctaatttt 13905054  T
Q  101 actttttcta 110  Q
     |||||||||    
T  13905053 gctttttcta 13905044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 13921345 - 13921454
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||| ||||||| |||||    
T  13921345 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaatttt 13921444  T
Q  101 actttttcta 110  Q
     |||||||||    
T  13921445 gctttttcta 13921454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 21816741 - 21816850
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||  |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  21816741 aaaacgtaaaattcctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 21816840  T
Q  101 actttttcta 110  Q
     |||||||||    
T  21816841 tctttttcta 21816850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 26098841 - 26098942
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    ||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       |||||||||||||||||||| ||||| |||||||    
T  26098841 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccatcactaatttccctcgctaattttgctttttc 26098940  T
Q  109 ta 110  Q
    ||    
T  26098941 ta 26098942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 43329878 - 43329769
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||| ||||||||  ||| ||||| ||||||||||||||||||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  43329878 aaaatgtaaaatccttctctaattccgtcactaaattttacgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 43329779  T
Q  101 actttttcta 110  Q
     |||||||||    
T  43329778 gctttttcta 43329769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 11837315 - 11837220
Alignment:
Q  15 ctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttcta 110  Q
    |||| ||||| ||||||||||||||||||||||| ||||| |||| |||||||       |||||| ||||||||||||| |||||  ||||||||    
T  11837315 ctctctaattccgtcactaaattttacgaccaaagaatttgtgaggaatttcattttttccatcacgaatttccctcgctaattttgttttttcta 11837220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 29956411 - 29956501
Alignment:
Q  20 taatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttcta 110  Q
    ||||| |||||||||||||| ||||||   ||||| |||| |||||||       |||||||||||||||||||| |||||||||||||||    
T  29956411 taattccgtcactaaattttgcgaccatggaatttgtgaggaatttcattttttccatcactaatttccctcgctaattttactttttcta 29956501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 30005566 - 30005656
Alignment:
Q  20 taatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttcta 110  Q
    ||||| |||||||||||||| ||||||   ||||| |||| |||||||       |||||||||||||||||||| |||||||||||||||    
T  30005566 taattccgtcactaaattttgcgaccatggaatttgtgaggaatttcattttttccatcactaatttccctcgctaattttactttttcta 30005656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 5565742 - 5565851
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| |||||  ||||||||||||| ||||||| |||||| ||||| |||| |       | ||||||||||||||| ||||||||    
T  5565742 aaaacgtgaaatccctctctaattatgtcactaaattttgcgaccaagaaatttgtgagagattttattttttccgtcactaatttccctccctgatttt 5565841  T
Q  101 actttttcta 110  Q
     |||||||||    
T  5565842 gctttttcta 5565851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 11007798 - 11007689
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||||||| |||||| |||  |||||||       | ||||||||||||||  || |||||    
T  11007798 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgacgaatttcattttttccgtcactaatttcccttactaatttt 11007699  T
Q  101 actttttcta 110  Q
     |||||||||    
T  11007698 gctttttcta 11007689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 11085449 - 11085348
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    ||||| |||| ||||| |||||||||||||| |||||||| |||||||||| |||||||       | | ||| ||||| |||||| |||||||||||||    
T  11085449 aaatccctctctaattccgtcactaaattttgcgaccaaagaatttatgaggaatttcattttttccgttactgatttctctcgctaattttactttttc 11085350  T
Q  109 ta 110  Q
    ||    
T  11085349 ta 11085348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 15490055 - 15490118
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||| ||||| ||||    
T  15490055 aaaacgtgaaatccctctttaattt-gtcactaaattttgcgaccaaaaaatttgtgagagattt 15490118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 30219366 - 30219422
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||| |||| ||||| |||||||||||||| ||||||||||||||||||| |||||    
T  30219366 aaatccctctctaattccgtcactaaattttgcgaccaaaaaatttatgaggaattt 30219422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 4393465 - 4393357
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| |||||   |||||| ||||||||||||       | ||||||||||||||| || |||||    
T  4393465 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccgtgaaatttgtgagaaatttcattttttccgtcactaatttccctcactaatttt 4393366  T
Q  101 actttttct 109  Q
     ||||||||    
T  4393365 gctttttct 4393357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 18539824 - 18539932
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| ||||||  |||||| |||| |||||||       | ||||||||||||||| || |||||    
T  18539824 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttttgaggaatttcattttttccgtcactaatttccctctctaatttt 18539923  T
Q  101 actttttct 109  Q
     ||||||||    
T  18539924 gctttttct 18539932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 10803740 - 10803806
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    ||||||||||||  |||||||||| ||||| |||||||| ||||||| |||||| |||| |||||||    
T  10803740 aaaacgtaaaattcctctttaattccgtcattaaattttgcgaccaagaaatttgtgaggaatttca 10803806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 19545530 - 19545596
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||    
T  19545530 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttca 19545596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23773497 - 23773563
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||    
T  23773497 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttca 23773563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 28859611 - 28859713
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| | |||||  ||||| |||| |||||||       | |||||||||| ||||||| |||||    
T  28859611 aaaacgtaaaatccctctctaattccgtcactaaattttgcaaccaaggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaatttt 28859710  T
Q  101 act 103  Q
    |||    
T  28859711 act 28859713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 31433757 - 31433863
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||  |||| ||||| ||||||||||||||||||||||  ||||| |||||||||| |        |||||||||||||||  || |||||    
T  31433757 aaaacgtgaaattcctctctaattccgtcactaaattttacgaccaaggaatttgtgagaaattttattttttctatcactaatttccctatctaatttt 31433856  T
Q  101 acttttt 107  Q
    |||||||    
T  31433857 acttttt 31433863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 1311074 - 1310965
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| | |||||       | |||||||||| ||| ||| |||||    
T  1311074 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggattttcattttttccgtcactaattttccttgctaatttt 1310975  T
Q  101 actttttcta 110  Q
     |||||||||    
T  1310974 gctttttcta 1310965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 36543777 - 36543878
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    ||||| |||| |||||||||||||||||||| |||||||| ||| | ||||| |||| |       |||||||||||| |||| || ||||| |||||||    
T  36543777 aaatccctctctaatttcgtcactaaattttgcgaccaaagaatctgtgagagattttattttttccatcactaattttcctccctaatttttctttttc 36543876  T
Q  109 ta 110  Q
    ||    
T  36543877 ta 36543878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 21490149 - 21490083
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    |||| |||||||| |||| |||||  ||||||||||||| |||||||  ||||| ||||||||||||    
T  21490149 aaaatgtaaaatccctctctaattctgtcactaaattttgcgaccaaggaatttgtgagaaatttca 21490083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 27212896 - 27212838
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgag 59  Q
    ||||||| ||||| |||||||||| |||||||||||||| |||| ||| ||||| ||||    
T  27212896 aaaacgtgaaatccctctttaattccgtcactaaattttgcgactaaagaatttgtgag 27212838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3461425 - 3461361
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||||||||| |||| ||||| ||||| |||||||| ||| ||| |||||| |||| |||||    
T  3461425 aaaacgtaaaatccctctctaattccgtcattaaattttgcgatcaagaaatttgtgaggaattt 3461361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 15064099 - 15064043
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    |||||||||| ||||| |||||||||||||| |||||||  ||||| |||| |||||    
T  15064099 aaatctctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaattt 15064043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 20615458 - 20615394
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||| ||||  |||| |||||  |||| ||||||||||||||||||||||| ||||| ||||    
T  20615458 aaaacgtgaaattcctctctaattctgtcattaaattttacgaccaaaaaatttgtgagatattt 20615394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 50665743 - 50665687
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||| |||| |||||||||||||||||||| ||| |||| ||||| |||| |||||    
T  50665743 aaatccctctctaatttcgtcactaaattttgcgatcaaagaatttgtgaggaattt 50665687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 41120852 - 41120743
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||||||| |||||| |||| |||||||       |||||||||||||||||||| |||||    
T  41120852 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccatcactaatttccctcgctaatttt 41120753  T
Q  101 actttttcta 110  Q
     |||||||||    
T  41120752 gctttttcta 41120743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 9177124 - 9177233
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| |||| |||||||       | | |||||||||||||||| |||||    
T  9177124 aaaacgtaaaatccctctttaatttcgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccgttactaatttccctcgctaatttt 9177223  T
Q  101 actttttcta 110  Q
      ||||||||    
T  9177224 gttttttcta 9177233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 22603572 - 22603681
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||| |||| ||||| |||| |||||||       |||||||||||||||| ||| |||||    
T  22603572 aaaacgtaaaatcgctctctaattccgtcactaaattttgcgatcaaagaatttgtgaggaatttcattttttccatcactaatttcccttgctaatttt 22603671  T
Q  101 actttttcta 110  Q
     |||||||||    
T  22603672 gctttttcta 22603681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 29549442 - 29549551
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||  |||| ||||||||| |||||||||| |       | |||||||||||||||||| |||||    
T  29549442 aaaacgtaaaatccctctctaattccgtcactaaatttcgcgactaaaaaatttgtgagaaattttatttttttcgtcactaatttccctcgctaatttt 29549541  T
Q  101 actttttcta 110  Q
     |||||||||    
T  29549542 gctttttcta 29549551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 19081752 - 19081858
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| |||||  |||||||||||||||||||||  ||||| |||||||||| |       ||||||||||||||||| || |||||    
T  19081752 aaaacgtgaaatccctctctaattctgtcactaaattttacgaccaaggaatttgtgagaaattttattttttccatcactaatttccctctctaatttt 19081851  T
Q  101 acttttt 107  Q
    |||||||    
T  19081852 acttttt 19081858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 19129640 - 19129746
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| |||||  |||||||||||||||||||||  ||||| |||||||||| |       ||||||||||||||||| || |||||    
T  19129640 aaaacgtgaaatccctctctaattctgtcactaaattttacgaccaaggaatttgtgagaaattttattttttccatcactaatttccctctctaatttt 19129739  T
Q  101 acttttt 107  Q
    |||||||    
T  19129740 acttttt 19129746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 4340431 - 4340540
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||| ||| |||||    
T  4340431 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttcccttgctaatttt 4340530  T
Q  101 actttttcta 110  Q
     |||||||||    
T  4340531 gctttttcta 4340540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 6412160 - 6412059
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    ||||| |||||||||| |||||||||||||| ||||||| |||||| |||| |||||||       | | |||||||||||||||| ||||| |||||||    
T  6412160 aaatccctctttaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccgttactaatttccctcgctaattttgctttttc 6412061  T
Q  109 ta 110  Q
    ||    
T  6412060 ta 6412059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 8941109 - 8941000
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||  |||| ||||| |||| ||||||||||||| |||  ||||| ||||||||||||       | |||||||||||||||||| |||||    
T  8941109 aaaacgtaaaattcctctctaattccgtcgctaaattttacgatcaaggaatttgtgagaaatttcattttttccgtcactaatttccctcgctaatttt 8941010  T
Q  101 actttttcta 110  Q
     |||||||||    
T  8941009 gctttttcta 8941000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 9110082 - 9109981
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    ||||| |||| ||||| |||||||||||||| ||||||| |||||| |||| |||||||       | |||||||||||||||||| ||||| |||||||    
T  9110082 aaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 9109983  T
Q  109 ta 110  Q
    ||    
T  9109982 ta 9109981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 19865276 - 19865377
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    ||||| |||| ||||| |||||||||||||| |||||||  ||||| ||||||||||||       | |||||||||| ||||||| |||||||||||||    
T  19865276 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgagaaatttcattttttccgtcactaattttcctcgctaattttactttttc 19865375  T
Q  109 ta 110  Q
    ||    
T  19865376 ta 19865377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 28229570 - 28229461
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| | |||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  28229570 aaaacgtaaaatccctctctaattccatcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 28229471  T
Q  101 actttttcta 110  Q
     |||||||||    
T  28229470 gctttttcta 28229461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 46786073 - 46785964
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| ||||| |||||||| |||||||  || || ||||||||||||       | |||||||||||||||||| |||||    
T  46786073 aaaacgtaaaatccctctctaattccgtcattaaattttgcgaccaaggaacttgtgagaaatttcattttttccgtcactaatttccctcgctaatttt 46785974  T
Q  101 actttttcta 110  Q
     |||||||||    
T  46785973 gctttttcta 46785964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 46790024 - 46790133
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| || | ||||| ||||| |||||||| |||||||| ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  46790024 aaaacgtaaaatccctttctaattccgtcattaaattttgcgaccaaagaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 46790123  T
Q  101 actttttcta 110  Q
     |||||||||    
T  46790124 gctttttcta 46790133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 18890664 - 18890556
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| ||| |||||||||| ||||||  |||||| |||| |||||||       |||||||||||||||||||| |||||    
T  18890664 aaaacgtgaaatccctctctaattccgttactaaattttgcgaccattaaatttgtgaggaatttcattttttccatcactaatttccctcgctaatttt 18890565  T
Q  101 actttttct 109  Q
     ||||||||    
T  18890564 gctttttct 18890556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 22158826 - 22158934
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| ||||||  |||||| |||| |||||||         |||||||||||||||||| |||||    
T  22158826 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttttctgtcactaatttccctcgctaatttt 22158925  T
Q  101 actttttct 109  Q
    |||||||||    
T  22158926 actttttct 22158934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 41071950 - 41071858
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgc 93  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||| ||||| |||| |||||||       | |||||||||||||||||    
T  41071950 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaatttcattttctccgtcactaatttccctcgc 41071858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 32046900 - 32046966
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    |||||||||||||||||| ||||| || ||||||||||| ||||||| |||||| |||| |||||||    
T  32046900 aaaacgtaaaatctctctctaattccgacactaaattttgcgaccaagaaatttgtgaggaatttca 32046966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 9259298 - 9259234
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||| |||||||||| ||||| |||||||||||||| ||||||  |||||| ||||||||||    
T  9259298 aaaacgtgaaatctctctctaattccgtcactaaattttgcgaccatgaaatttgtgagaaattt 9259234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 9985442 - 9985378
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||||||||| |||| ||||| ||||| ||||||||||||||||| ||||| |||| |||||    
T  9985442 aaaacgtaaaatccctctctaattccgtcaataaattttacgaccaaagaatttgtgaggaattt 9985378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 12161838 - 12161947
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| ||||||  |||||| |||| |||||||       | ||| |||||| ||||||| |||||    
T  12161838 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttttccgtcaataattttcctcgctaatttt 12161937  T
Q  101 actttttcta 110  Q
    ||||||||||    
T  12161938 actttttcta 12161947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 23457921 - 23458030
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| ||||||  |||||| |||| |||||||       | ||| |||||| ||||||| |||||    
T  23457921 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttttccgtcaataattttcctcgctaatttt 23458020  T
Q  101 actttttcta 110  Q
    ||||||||||    
T  23458021 actttttcta 23458030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 13523076 - 13523013
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatt 64  Q
    ||||||| ||||| |||| ||||| |||||||||||||| |||||||| ||||| |||||||||    
T  13523076 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgagaaatt 13523013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 20290435 - 20290327
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| |||||  ||| ||||| ||||||||||||||||| |||  |||||| |||| |||||||       | |||||||||||||||||| |||||    
T  20290435 aaaacgtgaaatcattctctaattccgtcactaaattttacggccatgaaatttgtgaggaatttcatttttc-cgtcactaatttccctcgctaatttt 20290337  T
Q  101 actttttcta 110  Q
    ||||||||||    
T  20290336 actttttcta 20290327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 48522556 - 48522606
Alignment:
Q  15 ctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||| |||| |||||||||||||| |||||||||||||| ||||||||||    
T  48522556 ctcttaaattccgtcactaaattttgcgaccaaaaaatttgtgagaaattt 48522606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 12806944 - 12806888
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||| |||| ||||| |||||||||||||||||||||| |||||| ||||| ||||    
T  12806944 aaatccctctataattccgtcactaaattttacgaccaagaaatttgtgagagattt 12806888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 41359019 - 41359078
Alignment:
Q  8 aaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    |||||| |||| ||||| |||||||||||||| |||||||| ||||| |||| |||||||    
T  41359019 aaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaatttca 41359078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 7830074 - 7830119
Alignment:
Q  20 taatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    |||||||||||||||||||| |||||||  ||||| ||||||||||    
T  7830074 taatttcgtcactaaattttgcgaccaaggaatttgtgagaaattt 7830119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 13308927 - 13308871
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||| |||| ||||||| |||||||||||| ||||||| |||||| |||| |||||    
T  13308927 aaatccctctctaatttcatcactaaattttgcgaccaataaatttgtgaggaattt 13308871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 52183702 - 52183766
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||| ||||| |||| ||||| |||||||||||||| ||||||  |||||| |||| |||||    
T  52183702 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaattt 52183766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 15105 - 14996
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||||||| ||||||||||| |||||||         |||||||||||||||||| |||||    
T  15105 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaagaaatttatgaggaatttcattttttcggtcactaatttccctcgctaatttt 15006  T
Q  101 actttttcta 110  Q
     |||||||||    
T  15005 gctttttcta 14996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 7093588 - 7093693
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| |||||| ||||||||||||| |||||||||||||| |||| |||||||       | |||||||||||||||||| |||||    
T  7093588 aaaacgtaaaatccctctctaattttgtcactaaattttgcgaccaaaaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 7093687  T
Q  101 actttt 106  Q
     |||||    
T  7093688 gctttt 7093693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 12779620 - 12779729
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||  |||| |||||||||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  12779620 aaaacgtaaaattcctctctaatttcgtcactaaattttgcgaccaatgaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 12779719  T
Q  101 actttttcta 110  Q
     |||||||||    
T  12779720 gctttttcta 12779729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 21293826 - 21293717
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||   ||||| ||||||||||||       | |||||||||||||||||| |||||    
T  21293826 aaaacgtgaaatctctctctaattccgtcactaaattttacgaccatggaatttgtgagaaatttcattttttccgtcactaatttccctcgctaatttt 21293727  T
Q  101 actttttcta 110  Q
      ||||||||    
T  21293726 gttttttcta 21293717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 43408626 - 43408517
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||||||| |||||| |||| |||||||       | ||||||||||||||| || |||||    
T  43408626 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccgtcactaatttccctcactaatttt 43408527  T
Q  101 actttttcta 110  Q
     |||||||||    
T  43408526 gctttttcta 43408517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 44476490 - 44476381
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||||  ||||| |||  |||||||       | |||||||||||||||||| |||||    
T  44476490 aaaacgtaaaatctctctctaattccgtcactaaattttgcgaccaaggaatttgtgaagaatttcattttttccgtcactaatttccctcgctaatttt 44476391  T
Q  101 actttttcta 110  Q
     |||||||||    
T  44476390 gctttttcta 44476381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 15636850 - 15636742
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| |||||||||||||||||||| ||||||  |||||| |||| |||||||       | |||||||||||||||||| |||||    
T  15636850 aaaacgtgaaatccctctctaatttcgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 15636751  T
Q  101 actttttct 109  Q
     ||||||||    
T  15636750 gctttttct 15636742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 13613208 - 13613101
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||| ||||| |||| |||||||       | |||||||||| ||||||| |||||    
T  13613208 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaatttcatttttttcgtcactaattttcctcgctaatttt 13613109  T
Q  101 actttttc 108  Q
     |||||||    
T  13613108 tctttttc 13613101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 13788170 - 13788061
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||| |||||||| |||| |||||||||||||||||||| |||||||  ||||| |||| |||||||       | ||||| |||||||||||| |||||    
T  13788170 aaaatgtaaaatccctctctaatttcgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactgatttccctcgctaatttt 13788071  T
Q  101 actttttcta 110  Q
     |||||||||    
T  13788070 gctttttcta 13788061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 28262384 - 28262493
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| ||||||||||||||  |||||  |||||| |||| |||||||       |||||||||||||||| ||| |||||    
T  28262384 aaaacgtgaaatccctctctaattccgtcactaaattttgtgaccatgaaatttgtgaggaatttcattttttccatcactaatttcccttgctaatttt 28262483  T
Q  101 actttttcta 110  Q
    ||||||||||    
T  28262484 actttttcta 28262493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 37724107 - 37723998
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||  ||||  |||||||||||||| |||||||| ||||| |||| |||||||       | ||||||||||||||||||||||||    
T  37724107 aaaacgtgaaatccctcgctaataccgtcactaaattttgcgaccaaagaatttgtgaggaatttcattttttccgtcactaatttccctcgctgatttt 37724008  T
Q  101 actttttcta 110  Q
     |||||||||    
T  37724007 tctttttcta 37723998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 41736192 - 41736301
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||| |||||||| |||| |||||||||||||||||||| ||| |||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  41736192 aaaatgtaaaatccctctctaatttcgtcactaaattttgcgatcaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 41736291  T
Q  101 actttttcta 110  Q
     |||||||||    
T  41736292 gctttttcta 41736301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 32185852 - 32185961
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||||||||||  ||||||  ||| |||||||       | |||||||||||||||||| |||||    
T  32185852 aaaacgtgaaatccctctctaattccgtcactaaattttacgaccatgaaatttgcgaggaatttcattttttccgtcactaatttccctcgctaatttt 32185951  T
Q  101 actttttcta 110  Q
      ||||||||    
T  32185952 gttttttcta 32185961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23858072 - 23857964
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||||||||||||  ||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  23858072 aaaacgtaaaatcattctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttca-ttttcccgtcactaatttccctcgctaatttt 23857974  T
Q  101 actttttcta 110  Q
     |||||||||    
T  23857973 gctttttcta 23857964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 2556134 - 2556221
Alignment:
Q  20 taatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttacttttt 107  Q
    ||||| |||||||||||||||| ||||| |||||| |||||||||| |       |||||||||||| |||| || ||||||||||||    
T  2556134 taattccgtcactaaattttacaaccaagaaatttgtgagaaattttattttttccatcactaattttcctctctaattttacttttt 2556221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 14757228 - 14757170
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    |||||||||| ||||| |||||||||||||| ||||||| |||||| |||| |||||||    
T  14757228 aaatctctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttca 14757170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 32008972 - 32009038
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttca 67  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||    
T  32008972 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttca 32009038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8430316 - 8430380
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||| ||||| |||| ||||| |||||||||||||||||| || ||||||| |||| |||||    
T  8430316 aaaacgtgaaatccctctctaattccgtcactaaattttacgatcataaaatttgtgaggaattt 8430380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26243436 - 26243372
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||||||||||  |||| ||||| ||||||||||||||||||||||  ||||| |||| |||||    
T  26243436 aaaacgtaaaattcctctctaattccgtcactaaattttacgaccaatgaatttgtgaggaattt 26243372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 37802493 - 37802441
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatt 53  Q
    |||||||||||||  ||| ||||| |||||||||||||| |||||||||||||    
T  37802493 aaaacgtaaaatcagtctctaattccgtcactaaattttgcgaccaaaaaatt 37802441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 35697489 - 35697539
Alignment:
Q  15 ctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    |||| ||||| |||||||||||||| |||||||||||||| ||||| ||||    
T  35697489 ctctctaattccgtcactaaattttgcgaccaaaaaatttgtgagagattt 35697539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 44722960 - 44723061
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    ||||| |||| ||||| |||||||||||||| |||| ||  ||||| | || |||||||       ||||| |||||||||||||| ||||| |||||||    
T  44722960 aaatccctctctaattccgtcactaaattttgcgactaaggaatttgtaaggaatttcattttttccatcattaatttccctcgctaattttgctttttc 44723059  T
Q  109 ta 110  Q
    ||    
T  44723060 ta 44723061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 182559 - 182663
Alignment:
Q  6 gtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttacttt 105  Q
    |||||||| |||| ||||| |||||||||||||| |||||||  ||||| ||||||||||||       | |||||||||||||||||| ||||||||||    
T  182559 gtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgagaaatttcattttttccgtcactaatttccctcgctaattttacttt 182658  T
Q  106 ttcta 110  Q
    |||||    
T  182659 ttcta 182663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 121102 - 120996
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| ||||| |||| ||||| |||||||||||||| ||||||| |||||| |||||||||| |       ||| ||||||||||||| || |||||    
T  121102 aaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgagaaattttatttttttcataactaatttccctctctaatttt 121003  T
Q  101 acttttt 107  Q
    |||||||    
T  121002 acttttt 120996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 84789 - 84680
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| | |||||||||||| |||||||  ||||| |||| |||||||         ||||||||||||||| || |||||    
T  84789 aaaacgtaaaatccctctctaattccatcactaaattttgcgaccaaggaatttgtgaggaatttcattttttctgtcactaatttccctcactaatttt 84690  T
Q  101 actttttcta 110  Q
     |||||||||    
T  84689 gctttttcta 84680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 26507 - 26616
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||| ||||| |||| |||||||       | |||||||||||| || || |||||    
T  26507 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaatttcattttttccgtcactaatttccgtcactaatttt 26606  T
Q  101 actttttcta 110  Q
     |||||||||    
T  26607 gctttttcta 26616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 39818 - 39709
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||| |||||||||| ||||| |||||||||||||| | ||||  ||||||  ||| |||||||       |||||||||||||||||||| |||||    
T  39818 aaaacgtgaaatctctctctaattccgtcactaaattttgcaaccatgaaatttgggaggaatttcattttttccatcactaatttccctcgctaatttt 39719  T
Q  101 actttttcta 110  Q
     |||||||||    
T  39718 gctttttcta 39709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 22235 - 22344
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||| ||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  22235 aaaacgtaaaatccctctctaattccgtcactaaattttgcgactaaggaatttgtgaggaatttcatttttttcgtcactaatttccctcgctaatttt 22334  T
Q  101 actttttcta 110  Q
     |||||||||    
T  22335 gctttttcta 22344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 3766 - 3875
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||| ||||||| |||||    
T  3766 aaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaatttt 3865  T
Q  101 actttttcta 110  Q
     |||||||||    
T  3866 gctttttcta 3875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 202798 - 202907
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||  |||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  202798 aaaacgtaaaattcctctctaattccgtcactaaattttgcgaccaaggaatttgtgagcaatttcattttttccgtcactaatttccctcgctaatttt 202897  T
Q  101 actttttcta 110  Q
     |||||||||    
T  202898 tctttttcta 202907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 12685 - 12783
Alignment:
Q  10 aatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    |||| |||| ||||| |||||||||||||| |||||| | |||||||||| |||||||       | |||||||||||||||||| ||||| |||||||    
T  12685 aatccctctctaattccgtcactaaattttgcgaccatagaatttatgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 12783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 6094 - 5985
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||| |||| ||||| | |||||||||||| |||||||  ||||| |||| |||||||       | |||||||||||||||||| |||||    
T  6094 aaaacgtaaaatccctctctaattccatcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 5995  T
Q  101 actttttcta 110  Q
      ||||||||    
T  5994 gttttttcta 5985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 9344 - 9235
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||||||||||||  ||| ||||| |||||||||||||| |||||||  ||||| |||| |||||||       | ||||||||||||||| || |||||    
T  9344 aaaacgtaaaatccttctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcactaatttt 9245  T
Q  101 actttttcta 110  Q
     |||||||||    
T  9244 gctttttcta 9235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 43941 - 44050
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    ||||||||||||   ||| ||||| ||| | |||||||| |||||||| ||||| |||| |||||||       |||||||||||||||||||| |||||    
T  43941 aaaacgtaaaattcttctctaattccgttattaaattttgcgaccaaagaatttgtgaggaatttcattttttccatcactaatttccctcgctaatttt 44040  T
Q  101 actttttcta 110  Q
     |||||||||    
T  44041 tctttttcta 44050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 173468 - 173578
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaa--tttatgagaaatttcannnnnnncatcactaatttccctcgctgatt 98  Q
    ||||| ||||||| |||| ||||| |||||||||||||| |||||||| ||  ||||||||||||||||       | |||||||||| ||||||| |||    
T  173468 aaaacataaaatcactctctaattccgtcactaaattttgcgaccaaagaatttttatgagaaatttcattttttccgtcactaattt-cctcgctaatt 173566  T
Q  99 ttactttttcta 110  Q
    || |||||||||    
T  173567 ttgctttttcta 173578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 74648 - 74592
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||| |||| ||||| |||||||||||||| ||||||| ||||||||||| |||||    
T  74648 aaatccctctctaattccgtcactaaattttgcgaccaagaaatttatgaggaattt 74592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 74824 - 74723
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgattttactttttc 108  Q
    ||||| |||| |||||  |||||||||||||||||||| | ||||| ||||||||||||       | |||||||||||||| ||| ||||| | |||||    
T  74824 aaatccctctctaattctgtcactaaattttacgaccagagaatttgtgagaaatttcattttttccgtcactaatttcccttgctaattttgccttttc 74725  T
Q  109 ta 110  Q
    ||    
T  74724 ta 74723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 439987 - 440096
Alignment:
Q  1 aaaacgtaaaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaatttcannnnnnncatcactaatttccctcgctgatttt 100  Q
    |||| |||||||| |||| ||||| |||||||||||||| ||| ||| |||||| |||| |||||||       | |||||||| | ||| ||| |||||    
T  439987 aaaatgtaaaatccctctctaattccgtcactaaattttgcgatcaagaaatttgtgaggaatttcattttttccgtcactaatattccttgctaatttt 440086  T
Q  101 actttttcta 110  Q
    ||||||||||    
T  440087 actttttcta 440096  T

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Target: scaffold0717 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 1026 - 970
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||| |||| ||||| |||||||||||||| |||||||  |||||||||| |||||    
T  1026 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttatgaggaattt 970  T

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Target: scaffold0087 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 37894 - 37838
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||| |||| ||||| |||||||||||||| |||||| ||||||| |||| |||||    
T  37894 aaatccctctctaattccgtcactaaattttgcgaccataaaatttgtgaggaattt 37838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 58614 - 58670
Alignment:
Q  9 aaatctctctttaatttcgtcactaaattttacgaccaaaaaatttatgagaaattt 65  Q
    ||||| |||| ||||| |||||||||||||| ||||||| |||||| |||| |||||    
T  58614 aaatccctctctaattccgtcactaaattttgcgaccaagaaatttttgaggaattt 58670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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