View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2673_high_27 (Length: 274)
Name: NF2673_high_27
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2673_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 32414074 - 32413845
Alignment:
| Q |
14 |
agaacaatgttgtatcaaccaccgttacaatcaagaagaatcctgctggctattcccagttccacctttaaatcctcctttgaaatctgaattcaccata |
113 |
Q |
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| T |
32414074 |
agaacaatgttgtatcaaccaccgttacaatcaagaagaatcctgctggctattcccagttcc------------tcctttgaaatctgaattcaccata |
32413987 |
T |
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| Q |
114 |
tttccaacttggagaaatccttacttttagtattaccatcaatgtcttctcactcacaacgatggatatacgaagtgttcatcaattttagaggcgagga |
213 |
Q |
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| T |
32413986 |
ttcccaacttggagaaatccttacttttagtattaccatcaatgtcttctcactcacaacgatggatatacaaagtgttcatcaattttagaggcgagga |
32413887 |
T |
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| Q |
214 |
cactcgtaaaaattttgtttctcatctctatgctgctctctc |
255 |
Q |
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| T |
32413886 |
cactcgtaaaaattttgtttctcatctcgatgctgctctctc |
32413845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 3395235 - 3395157
Alignment:
| Q |
175 |
atggatatacgaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatctctatgctgctctc |
253 |
Q |
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| T |
3395235 |
atggatacacgacgtgttcatcaattttagagggaaagatactcgcaagacttttgtttctcatctctatgctgctctc |
3395157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 3309581 - 3309652
Alignment:
| Q |
175 |
atggatatacgaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatctctatgc |
246 |
Q |
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| T |
3309581 |
atggttatacgacgtgttcatcaatttcaggggaaaagacactcgcaacaattttgtttctcatctctatgc |
3309652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 31173183 - 31173257
Alignment:
| Q |
175 |
atggatatacgaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatctctatgctgc |
249 |
Q |
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| T |
31173183 |
atggatatacgacgtgttcatcaatttcagaggaaaagatactcgcaacgatttcgtttctcatctcaatgctgc |
31173257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 13784978 - 13785051
Alignment:
| Q |
175 |
atggatatacgaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatctctatgctg |
248 |
Q |
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| T |
13784978 |
atggatatatgacgtgttcatcaattttagatcaaaagacactggcaaaagtttcgtttctcatctctatgctg |
13785051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 3265352 - 3265276
Alignment:
| Q |
173 |
cgatggatatacgaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatctctatgctgc |
249 |
Q |
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| T |
3265352 |
cgatggatacacgacgtgttcattagttttagaggagaagatactcgtaagacgttcgtttctcatctatatgctgc |
3265276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 30414570 - 30414650
Alignment:
| Q |
175 |
atggatatacgaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatctctatgctgctctctc |
255 |
Q |
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| T |
30414570 |
atggatatacgacgtgttcataaatttcagaggggacgacagtcgtaatagcttggtttctcatctgtacgctgctctctc |
30414650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 15775342 - 15775413
Alignment:
| Q |
175 |
atggatatacgaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatctctatgc |
246 |
Q |
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| T |
15775342 |
atggatctacgaagtgttcataaattttaggggggaagatactcgtagcaatttcgtttctcatctttatgc |
15775413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 20835784 - 20835845
Alignment:
| Q |
188 |
gtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatctctatgctgc |
249 |
Q |
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| T |
20835784 |
gtgttcataagttttagaggggaggatactcgcaacactattgtttctcatctctatgctgc |
20835845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 8374505 - 8374433
Alignment:
| Q |
182 |
tacgaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatctctatgctgctctct |
254 |
Q |
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| T |
8374505 |
tacgacgtgttcataaatttcagaggggaggatactcgcagaactattgtttctcatctctatactgcactct |
8374433 |
T |
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