View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2673_high_5 (Length: 671)

Name: NF2673_high_5
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2673_high_5
NF2673_high_5
[»] chr2 (1 HSPs)
chr2 (25-653)||(31835560-31836197)


Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 25 - 653
Target Start/End: Original strand, 31835560 - 31836197
Alignment:
Q  25 ttgtgtagagaaatagaaaaatctgatcaatgtctaacacattatt----ctaaggctaagacnnnnnnnttgaactccataaatcaaagcttagacatt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||        ||||||||||||||||||||||||||||||    
T  31835560 ttgtgtagagaaatagaaaaatctgatcaatgtctaacacattattttatctaaggctaagagaaaaaaattgaactccataaatcaaagcttagacatt 31835659  T
Q  121 ttaagt-gagtgtaccggttgcttagtctaaccaaactttggtcgatctataagctcaagtta--------------gtttcttttcccaccctcatggt 205  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||| | |||||||    
T  31835660 ttaagttgagtgtaccggttgcttagtctaaccaaactttggtcgatctataagctcaagttaattaatattaggtagtttcttttcccatcttcatggt 31835759  T
Q  206 ttctcttgcgtctacaacatttcaaattatagaattcgaaaggtgtnnnnnnnncgtttgaaaaacaccctccaacatcctaaaatattccatattatac 305  Q
    |||||||||         |||||| ||||||||||||||||||||         ||||||||||| |||||||||||||||||||||||||  || |||     
T  31835760 ttctcttgc---------atttcagattatagaattcgaaaggtgaaaaaaaaacgtttgaaaaataccctccaacatcctaaaatattccggatgatag 31835850  T
Q  306 aattcgaaccagatgaaaagggtaggaaaaaactctcttaatactaacttataacttcgtaggttgctgtcaatggccttgtgtagtaggcaggcacctg 405  Q
    ||| |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||    
T  31835851 aatccgaaccaggtgaaaagggtag-aaaaaactctctta-tactaacttataacttcgtaggctgctgtcaaaggccttgtgtagtaggcaggcatctg 31835948  T
Q  406 ttggcctacattatagacaacgagcttcttctcagagaattgattcttccatcttttcatctattgtatggttactatgttttgtaatgtaacacatttt 505  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31835949 ttggcctacattatagacaacaagcttcttctcagagaattgattcttccatcttttcatctattgtatggttactatgttttgtaatgtaacacatttt 31836048  T
Q  506 tcaagttttgtctcatgcaaaggatgatatatatgaggtatcacatttttcaagttttgtcttatgcaaaggatgatccatatgagaaagagctacgtgt 605  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31836049 tcaagttttgtctcatgcaaaggatgatacatatgaggtatcacatttttcaagttttgtcttatgcaaaggatgatacatatgagaaagagctacgtgt 31836148  T
Q  606 gtacaattaaccaatatgtcac-aaattggttcttctcatgtcatatgt 653  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31836149 gtacaattaaccaatatgtcacaaaattggttcttctcatgtcatatgt 31836197  T

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