View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2673_high_6 (Length: 646)
Name: NF2673_high_6
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2673_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 219 - 476
Target Start/End: Original strand, 7446419 - 7446676
Alignment:
| Q |
219 |
cagttgattggattataactagacataaattttttaattccaacaatattatattactatagtgttttgtttttatttgtctcaacacaacagcagtaac |
318 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7446419 |
cagtggattggattataacttgacataaattttttaattccaacaatattatattactatagtgttttgtttttatttgtctcaacacaacaccagtaac |
7446518 |
T |
|
| Q |
319 |
gtcaatttagggcaagcatgttaccatgtttcttctctggtggtcttgatattttttctattctcgtttagctctaaaaaagttgtttgcttagtttaat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7446519 |
gtcaatttagggcaagcatgttaccatgtttcttctctggtggtcttgatattttttctattctcgtttagctctaaaaaagttgtttgcttagtttaat |
7446618 |
T |
|
| Q |
419 |
ccactaaatgttgttgatagagagaagaaacactagcatgcaaccggttctttaggac |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7446619 |
ccactaaatgttgttgatagagagaagaaacactagcatgcaaccggttctttaggac |
7446676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 7446220 - 7446360
Alignment:
| Q |
17 |
cagtatggttccagaatcgaagggctaggtggaagaacaagaaacttgaagaagagtacttcagtcttnnnnnnnttcatgaatccaccattcttgagaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7446220 |
cagtatggttccagaatcgaagggctaggtggaagaacaagaaacttgaagaagagtacttcagtcttaaaaaaattcatgaatccaccattcttgagaa |
7446319 |
T |
|
| Q |
117 |
gtgtcttcttgaaaccaaggtatacctctctcttcctcttc |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7446320 |
gtgtcttcttgaaaccaaggtatacctctctcttcctcttc |
7446360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 7461164 - 7461304
Alignment:
| Q |
17 |
cagtatggttccagaatcgaagggctaggtggaagaacaagaaacttgaagaagagtacttcagtcttnnnnnnnttcatgaatccaccattcttgagaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7461164 |
cagtatggttccagaatcgaagggctaggtggaagaacaagaaacttgaagaagagtacttcagtcttaaaaaaaatcatgaatccaccattcttgagaa |
7461263 |
T |
|
| Q |
117 |
gtgtcttcttgaaaccaaggtatacctctctcttcctcttc |
157 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
7461264 |
gtgtctccttgaaaccaaggtatacctctttcttcctcttc |
7461304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 257 - 381
Target Start/End: Original strand, 7461445 - 7461569
Alignment:
| Q |
257 |
tccaacaatattatattactatagtgttttgtttttatttgtctcaacacaacagcagtaacgtcaatttagggcaagcatgttaccatgtttcttctct |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7461445 |
tccaacaatattatattactatagtgttttgtttttatttgtatcaacacaacactagtaacgtcaatttagggcaagcatgctaccatgtttcttctct |
7461544 |
T |
|
| Q |
357 |
ggtggtcttgatattttttctattc |
381 |
Q |
| |
|
|||||||||||| |||||| ||||| |
|
|
| T |
7461545 |
ggtggtcttgattttttttttattc |
7461569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 547 - 640
Target Start/End: Original strand, 7446740 - 7446833
Alignment:
| Q |
547 |
atgaacgttcgttcatatgagctctgggctcgatgatatccaaaccgtacattattaagttttcacttctcagccacacgatatttcatctcac |
640 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
7446740 |
atgaacgttcgttcatatgagctctgggctcgatgaaatccaaaccgtacattattaagttttcactactcagccacacgatatttcatgtcac |
7446833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 393 - 476
Target Start/End: Original strand, 7461594 - 7461674
Alignment:
| Q |
393 |
taaaaaagttgtttgcttagtttaatccactaaatgttgttgatagagagaagaaacactagcatgcaaccggttctttaggac |
476 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| |||||| |||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
7461594 |
taaaaaagttgtttgcttagtttaataccctaaa---tgttgaaagagagaataggcactagcatgcaacgagttctttaggac |
7461674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University