View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2673_low_1 (Length: 694)
Name: NF2673_low_1
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2673_low_1 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0205 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 9 - 694
Target Start/End: Original strand, 27296317 - 27297002
Alignment:
| Q |
9 |
atcatcaggagatgatatggtcacatcatggaccaagactccattacagttgtcaaacttgagatggcattgtggactattttgaattgttatgcctgtg |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27296317 |
atcaccaggagatgatatggtcacatcatggaccaagactccattacagttgtcaaacttgagatggcattgtggactattttgaattgttatgcctgtg |
27296416 |
T |
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| Q |
109 |
actgttggattaatacttccatagaaccttattgcctgttacagaaacatgtattagcttcattatgttcctaaatctccttaacataaatcaaatttgg |
208 |
Q |
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| T |
27296417 |
actgttggattaatacttccatagaaccttatagcctgt-acagaaacatgtattagcttcattatgttcctaaatctccttaacataaatcaaatttgg |
27296515 |
T |
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| Q |
209 |
tgttgaaaaaggtttaaaatgttactcacagttggtttgatgcttggcatttttcctcccagtgaactttcaatctagtacaatcgcaaaggt-taaatg |
307 |
Q |
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| T |
27296516 |
tgttgaaaaaggtttaaaatgttactcacagttggtttgatgcttggcatttttcctcccagtgaactttcaatctagtacaatcgcaaaggtataaatg |
27296615 |
T |
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| Q |
308 |
attagcttaatgtgaacaacaaaatttctacggaaaaataggcgtgtatggtgcccgacatgtgtcagtgtctaatattgacatgacacggacacatgtg |
407 |
Q |
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| T |
27296616 |
attagcttaatgtgaacaacaaaatttctatggaaaaataggcgtgtatggtgcccgacatgtgtcactgtctaatattgacatgacacggacacatgtg |
27296715 |
T |
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| Q |
408 |
gttacatttcatcccttctattgtcttaaactattactagtgtctatgtgttgctatcaacgtcacatttgtgtttgtgtctgcgtttcatagtgtgtat |
507 |
Q |
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| T |
27296716 |
gttacatttcatcccttctattgtcttaaactattactagtgtctatgtgttgctatcaacgtcacatttgtgtttgtgtctgcgtttcatagtgtgtat |
27296815 |
T |
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| Q |
508 |
gaaatatcgactactgataattgttgatattacttgttttatactctaaaatgaattgatcactttcgaggagataaatccgcgaaattgcatggtaaaa |
607 |
Q |
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| T |
27296816 |
gaaatatcgactactgataattgttgatattacttgttttatactctaaaatgaattgatcactttcgaggagataaatccgcgaaattgcatggtaaaa |
27296915 |
T |
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| Q |
608 |
atggaaattacctgcattggtgggctcacaattgtgttgtttaaaggtaccaagagtttttcctcatcatctaaaggatcattatac |
694 |
Q |
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| T |
27296916 |
atgaaaattacctgcattggtgggctcacaattgtgttgtttaaaggtaccaagagtttttcctcatcatctaaaggatcattatac |
27297002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 14737746 - 14737638
Alignment:
| Q |
9 |
atcatcaggagatgatatggtcacatcatggaccaagactccattacagttgtcaaacttgagatggcattgtggactattttgaattgttatgcctgtg |
108 |
Q |
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|||| |||||||||| || |||||||||| || | ||| ||||| || ||||||||||| ||||| || || |||||||| ||||||||||| || ||| |
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| T |
14737746 |
atcaccaggagatgaaatactcacatcatgaacaaggaccccattgcaattgtcaaactttagatgacactgaggactattctgaattgttatacccgtg |
14737647 |
T |
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| Q |
109 |
actgttgga |
117 |
Q |
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| T |
14737646 |
acagttgga |
14737638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 365 - 415
Target Start/End: Complemental strand, 24047956 - 24047906
Alignment:
| Q |
365 |
acatgtgtcagtgtctaatattgacatgacacggacacatgtggttacatt |
415 |
Q |
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| T |
24047956 |
acatgtttcagtgtctaatattgacatgacaacgacacatgtagttacatt |
24047906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 376 - 416
Target Start/End: Complemental strand, 29163452 - 29163412
Alignment:
| Q |
376 |
tgtctaatattgacatgacacggacacatgtggttacattt |
416 |
Q |
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| T |
29163452 |
tgtctactattgacaagacacggacacatgtgattacattt |
29163412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 21503 - 21451
Alignment:
| Q |
363 |
cgacatgtgtcagtgtctaatattgacatgacacggacacatgtggttacatt |
415 |
Q |
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| T |
21503 |
cgacacgtgtcagtgtttaatattgacacaacactgatacatgtggttacatt |
21451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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