View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2673_low_11 (Length: 507)
Name: NF2673_low_11
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2673_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 29632759 - 29632273
Alignment:
| Q |
1 |
aaacagaggatatgcaactgtcctcgaatgatatatataattacataaacattaaaatnnnnnnncatagcggtcaggctatctacaaacagtgaatcca |
100 |
Q |
| |
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|||||| ||||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
29632759 |
aaacagtggatatgcaactgacctcgaatgatata----attacataaacattaaaataaaaaaacatggcggtcaggctatctacaaacagtgaatcca |
29632664 |
T |
|
| Q |
101 |
aacatgcattaagcaaaacacttaagaccacataaatcaataaaaaagcatctttagcacacaataaaatcaaataaaaatgaagttctaatgcaagcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29632663 |
aacatgcattaagcaaaacacttaagaccacataaatcaataaaaaagcatctttagcacacaataagatcaaataaaaatgaagttctaatgcaagcat |
29632564 |
T |
|
| Q |
201 |
aattaaacagtcttccaatcatacttcatcaatcttcaaatgctcaggcaccttaaatcccttcctaagcctcgaaagcatacatgtacatgttatctta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29632563 |
aattaaacagtcttccaatcatacttcatcaatcttcaaatgctcaggcaccttaaatcccttcctaagcctcgaaagcatacatgtacatgttatctta |
29632464 |
T |
|
| Q |
301 |
ataacagtcacacatcttttgcagattactagtcatggttgctgaaaagaacaggttttgccggttttctggtaagcactggaagatcactttcaactcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29632463 |
ataacagtcacacatcttttgcagattactagtcatggttgctgaaaagaacaggttttgccggttttctggtaagcactggaagatcactttcaactcc |
29632364 |
T |
|
| Q |
401 |
tcctgaaaaccaacatccaagagttggtctgcttcatccaagacaagaaactgcagaagcaagtgtcagtcaggtacagcataatcatatt |
491 |
Q |
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| T |
29632363 |
tcctgaaaaccaacatccaagagttggtctgcttcatccaagacaagaaactgcagaagcaagtgtcagtcaggtacagcataatcatatt |
29632273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 189 - 466
Target Start/End: Complemental strand, 29631360 - 29631087
Alignment:
| Q |
189 |
taatgcaagcataattaaacagtcttccaatcatacttcatcaatcttcaaatgctcaggcaccttaaatcccttcctaagcctcgaaagcatacatgta |
288 |
Q |
| |
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|||||||| |||||||||||||| || |||||||||| ||||||||||||||||||| ||| ||| | |||||| |||||||||| |||||||||| |
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| T |
29631360 |
taatgcaaacataattaaacagtgttggaatcatacttgatcaatcttcaaatgctcaagcaacttcag-cccttcacaagcctcgaaggcatacatgt- |
29631263 |
T |
|
| Q |
289 |
catgttatcttaataacagtcacacatc---ttttgcagattactagtcatggttgctgaaaagaacaggttttgccggttttctggtaagcactggaag |
385 |
Q |
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| T |
29631262 |
-----tatctcgataacggtcatacatcatctttttcagattactagtcatggtttctgaaaagaagaggttttgccggttttctggtaagcactggacg |
29631168 |
T |
|
| Q |
386 |
atcactttcaactcctcctgaaaaccaacatccaagagttggtctgcttcatccaagacaagaaactgcagaagcaagtgt |
466 |
Q |
| |
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| T |
29631167 |
ataacattcaattcatcccgaaaaccaacatccaaaagttggtctgcttcgtccaaaacaagaaactgcagaaacaagtgt |
29631087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 293 - 462
Target Start/End: Original strand, 27662707 - 27662876
Alignment:
| Q |
293 |
ttatcttaataacagtcacacatcttttgcagattactagtcatggttgctgaaaagaacaggttttgccggttttctggtaagcactggaagatcactt |
392 |
Q |
| |
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||||||| ||||| |||| || |||||||| ||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||| || || | || |
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| T |
27662707 |
ttatcttgataacgctcacgcaacttttgcaaattactagttgttgttgcagaaaagaataggttttgccggttttctggtaagcactgaaatataaatt |
27662806 |
T |
|
| Q |
393 |
tcaactcctcctgaaaaccaacatccaagagttggtctgcttcatccaagacaagaaactgcagaagcaa |
462 |
Q |
| |
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|||| || ||||||||||||||||||| || | | |||||||||||||||||||||||||||| |||||| |
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| T |
27662807 |
tcaattcatcctgaaaaccaacatccaggactcgatctgcttcatccaagacaagaaactgcaaaagcaa |
27662876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 16488450 - 16488410
Alignment:
| Q |
163 |
aataaaatcaaataaaaatgaagttctaatgcaagcataat |
203 |
Q |
| |
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||||||||||||||||||| ||||| | ||||||||||||| |
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| T |
16488450 |
aataaaatcaaataaaaataaagtttttatgcaagcataat |
16488410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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