View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2673_low_13 (Length: 485)
Name: NF2673_low_13
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2673_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 149 - 474
Target Start/End: Complemental strand, 2768199 - 2767870
Alignment:
| Q |
149 |
catgcaataccttattgctagatattaaaccagatattacatgttattctagaaaacaaagttggtttaaattagaaggttttgttattacaaaaatgtt |
248 |
Q |
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| T |
2768199 |
catgcaataccttattgctagatattaaaccagatattacatgttattctagaaaacaaagttggtttaaattataaggttttgttattacaaaaatgtt |
2768100 |
T |
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| Q |
249 |
ttggaaatatgcattaataatacacatatatacttgcaattttactaatccttttgcgt----gatgatagatatattcaatttgtatactttgataact |
344 |
Q |
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| T |
2768099 |
ttggaaatatgcattaataatacacatatatacttgcaattgtactaatccttttgcgtacgtgatgatagatatattcaatttgtatactttgataact |
2768000 |
T |
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| Q |
345 |
aactcgttgagctcatgtggttaaaaatgaactttggttaaatttgattaagctttggtactattcgagttcgattttctattagaataatcattagtca |
444 |
Q |
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| T |
2767999 |
aactcgttgagctcatgtggttaaaaatgaactttggttaaatttgattaagctttggtactattcgagttcaattttctattagaataatcattagtca |
2767900 |
T |
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| Q |
445 |
gactttactttcattctagttaaatttctt |
474 |
Q |
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| T |
2767899 |
gactttactttcattctagttaaatttctt |
2767870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 2768351 - 2768288
Alignment:
| Q |
20 |
acttgttactcagctcttcaaggtgatagtttaattctttcatgtttatcactattactacttc |
83 |
Q |
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| T |
2768351 |
acttgttactcagctcttcaaggtgatagtttaattctttcatgtttatcactattactacttc |
2768288 |
T |
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