View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2673_low_14 (Length: 480)

Name: NF2673_low_14
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2673_low_14
NF2673_low_14
[»] chr7 (9 HSPs)
chr7 (1-224)||(5376279-5376502)
chr7 (263-398)||(5368284-5368419)
chr7 (87-242)||(5368062-5368214)
chr7 (354-460)||(5376119-5376228)
chr7 (73-202)||(36853046-36853175)
chr7 (120-219)||(35169949-35170048)
chr7 (397-460)||(5368451-5368515)
chr7 (70-184)||(24547662-24547777)
chr7 (146-195)||(46214467-46214516)
[»] chr8 (14 HSPs)
chr8 (123-219)||(26819258-26819354)
chr8 (140-197)||(3017471-3017528)
chr8 (146-211)||(26762851-26762916)
chr8 (141-190)||(39560339-39560388)
chr8 (144-196)||(10744257-10744309)
chr8 (141-219)||(30011758-30011836)
chr8 (141-212)||(16527482-16527553)
chr8 (74-169)||(34338653-34338748)
chr8 (141-186)||(2309154-2309200)
chr8 (144-198)||(43059451-43059505)
chr8 (141-190)||(29705899-29705948)
chr8 (82-138)||(4670602-4670657)
chr8 (127-196)||(16168305-16168376)
chr8 (141-205)||(31188874-31188938)
[»] chr6 (6 HSPs)
chr6 (125-205)||(733580-733662)
chr6 (140-197)||(18361298-18361355)
chr6 (146-191)||(31650307-31650352)
chr6 (119-198)||(8782972-8783051)
chr6 (142-205)||(25094709-25094772)
chr6 (142-211)||(7952307-7952376)
[»] chr5 (8 HSPs)
chr5 (112-191)||(36261960-36262039)
chr5 (74-193)||(35035571-35035691)
chr5 (144-195)||(18871012-18871063)
chr5 (141-191)||(36639769-36639819)
chr5 (125-191)||(16230759-16230827)
chr5 (148-212)||(16215390-16215454)
chr5 (141-192)||(16962198-16962248)
chr5 (128-218)||(7705307-7705397)
[»] chr2 (5 HSPs)
chr2 (76-211)||(10231799-10231935)
chr2 (99-196)||(9529506-9529600)
chr2 (142-196)||(5129658-5129712)
chr2 (161-198)||(35991377-35991414)
chr2 (142-194)||(44250661-44250713)
[»] chr1 (6 HSPs)
chr1 (127-219)||(14303921-14304015)
chr1 (76-158)||(16979581-16979664)
chr1 (141-219)||(24126880-24126957)
chr1 (148-182)||(32408099-32408133)
chr1 (158-211)||(15867621-15867674)
chr1 (70-195)||(34796781-34796907)
[»] chr4 (3 HSPs)
chr4 (142-211)||(1132154-1132223)
chr4 (141-211)||(10997329-10997399)
chr4 (151-204)||(18966004-18966057)
[»] chr3 (5 HSPs)
chr3 (140-198)||(48183708-48183765)
chr3 (125-187)||(48553069-48553131)
chr3 (141-190)||(38900006-38900055)
chr3 (146-191)||(43220827-43220872)
chr3 (127-196)||(44009252-44009323)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5376502 - 5376279
Alignment:
Q  1 atacaagtgagtgagcagtctcatgtcgactaagagtaaactaaatgaatgattaaaagacgtgttttaaataatgagtttaattttgatatattgtcag 100  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5376502 atacaagtgagtgaacagtctcatgtcgactaagaataaactaaatgaatgattaaaagacgtgttttaaataatgagtttaattttgatatattgtcag 5376403  T
Q  101 tgtaaaaaggctttacaacgtcagcaaatcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatca 200  Q
    ||||||||||||||||||| | || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5376402 tgtaaaaaggctttacaacattagaaaatcacaaccaaccatgtgcgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatca 5376303  T
Q  201 tgattcattgaaagtgtaatacac 224  Q
    ||||||||||||||||||||||||    
T  5376302 tgattcattgaaagtgtaatacac 5376279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 263 - 398
Target Start/End: Original strand, 5368284 - 5368419
Alignment:
Q  263 aaatattaaagacacctaatcatgaatagagacaaacctgaagttctttactgtaactagaaatgagttgagaactaaggtatgaaacatccatgcatat 362  Q
    |||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  5368284 aaatattaaaggaacctaatcatcaatagagacaaacctgaagttctttactgtaactagaaatcacttgagaactaaggtatgaaacatccatgcatat 5368383  T
Q  363 attgccaccaccaagactgacaatagtcgttttatc 398  Q
    ||||||||||||||||||||||||||||||||||||    
T  5368384 attgccaccaccaagactgacaatagtcgttttatc 5368419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 5368062 - 5368214
Alignment:
Q  87 tgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaa 186  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||  |||||||||||||| ||   |||||||| |||||||||||||    
T  5368062 tgatatattgtcagtgtaaaaaggctttacagcatcagaaaatcacaaccaatcattcgtgactttagaagttgt---gattacagccaaacgtttttaa 5368158  T
Q  187 tgatctgacgatcatgattcattgaaagtgtaatacaccgacaatttatctgaatt 242  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||    
T  5368159 tgatctgatgatcatgattcattgaacgtgtaatacactgacaatttatatgaatt 5368214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 354 - 460
Target Start/End: Complemental strand, 5376228 - 5376119
Alignment:
Q  354 catgcatatattgccaccaccaagactgacaatagtcgttttatccagaggaggaa---attgggct-ccttcttttttgaggttccttgtaaactagaa 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||     |   |||||||| ||||||||||||||||||||||||||||||||    
T  5376228 catgcatatattgccaccaccaagactgacaatagtcgttttatcc-gagtcttcatctattgggctcccttcttttttgaggttccttgtaaactagaa 5376130  T
Q  450 gacatgggatt 460  Q
    |||||||||||    
T  5376129 gacatgggatt 5376119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 73 - 202
Target Start/End: Original strand, 36853046 - 36853175
Alignment:
Q  73 aatgagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccat--gtgtgactttagaagtagttatgattac 170  Q
    ||||||||||||||||||| | |||| || |||||||  ||||||  ||||| ||||||||||||| |||  |||||||||||||||||||||||||||     
T  36853046 aatgagtttaattttgatacactgtcggtataaaaag--tttacattgtcagtaaatcacaaccaatcatatgtgtgactttagaagtagttatgattat 36853143  T
Q  171 agtcaaacgtttttaatgatctgacgatcatg 202  Q
    | |||||  |||||| ||||||||| ||||||    
T  36853144 aatcaaatatttttattgatctgactatcatg 36853175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 35170048 - 35169949
Alignment:
Q  120 gtcagcaaatcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaa 219  Q
    |||| ||||||| |||||| |||||||||||||||||||||||||||||| |||||||| | |||||| |||| ||||| |  ||| ||||| |||||||    
T  35170048 gtcaacaaatcataaccaatcatgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctaacgattacaattgattgacagtgtaa 35169949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 397 - 460
Target Start/End: Original strand, 5368451 - 5368515
Alignment:
Q  397 tccagaggaggaaattgggctcc-ttcttttttgaggttccttgtaaactagaagacatgggatt 460  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||||||||    
T  5368451 tccagaggaggaaattgagctcccttcttttttgaggttccttgtaaattagaggacatgggatt 5368515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 184
Target Start/End: Original strand, 24547662 - 24547777
Alignment:
Q  70 aataatgagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccatgt--gtgactttagaagtagttatgat 167  Q
    ||||| |||||| | ||||||| |  ||||||||||||||  ||||||  ||||  ||||||||||||| ||| |  |||| ||||||||||||||||||    
T  24547662 aataaagagtttgaatttgatacaccgtcagtgtaaaaagt-tttacactgtcaataaatcacaaccaatcatatctgtgattttagaagtagttatgat 24547760  T
Q  168 tacagtcaaacgttttt 184  Q
    |  |||||||| |||||    
T  24547761 tgaagtcaaacattttt 24547777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 46214516 - 46214467
Alignment:
Q  146 tgactttagaagtagttatgattacagtcaaacgtttttaatgatctgac 195  Q
    |||||||||||||  | ||||||| |||||||||||||| ||||||||||    
T  46214516 tgactttagaagtcataatgattaaagtcaaacgttttttatgatctgac 46214467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 26819354 - 26819258
Alignment:
Q  123 agcaaatcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaa 219  Q
    |||||||||||||||| |||||||||||||||||||||||  ||| | |||||||| ||||||||||||| |||||  | ||| |||||| ||||||    
T  26819354 agcaaatcacaaccaatcatgtgtgactttagaagtagttgcgataaaagtcaaacatttttaatgatctaacgattgtaattgattgaatgtgtaa 26819258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 3017471 - 3017528
Alignment:
Q  140 catgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacga 197  Q
    |||||||||||||  ||||||||||||||| |||||||| ||||||||||||||||||    
T  3017471 catgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacga 3017528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 26762916 - 26762851
Alignment:
Q  146 tgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattga 211  Q
    |||||||||||||| ||||||||| ||||||||||||||| |||||||| ||| |||||| |||||    
T  26762916 tgactttagaagtaattatgattaaagtcaaacgtttttactgatctgaggattatgattgattga 26762851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 39560339 - 39560388
Alignment:
Q  141 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgat 190  Q
    |||| |||||||||||||||||||||||| |||||||| |||||||||||    
T  39560339 atgtatgactttagaagtagttatgattaaagtcaaacatttttaatgat 39560388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 10744309 - 10744257
Alignment:
Q  144 tgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacg 196  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||| |||||    
T  10744309 tgtgactttagaagcagttataattaaagtcaaacgtttttaatgatgtgacg 10744257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 30011758 - 30011836
Alignment:
Q  141 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaa 219  Q
    |||||||| |||||||||||||||||||  |||||||| ||||||||| | |||| |  |||||| ||||| |||||||    
T  30011758 atgtgtgattttagaagtagttatgattgaagtcaaacatttttaatgttatgacaagtatgattgattgacagtgtaa 30011836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 16527482 - 16527553
Alignment:
Q  141 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaa 212  Q
    |||| |||||||||||||||||| || || | ||||||||| |||||||||||| ||| | |||| ||||||    
T  16527482 atgtatgactttagaagtagttacgactaaactcaaacgttcttaatgatctgatgattacgattgattgaa 16527553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 34338653 - 34338748
Alignment:
Q  74 atgagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccatgtgtgactttagaagtagttatgatta 169  Q
    ||||||| |||||||||| | |||| |||||||||    ||||| |||||   ||| ||||| || |||||||||||||| |||||||||||||||    
T  34338653 atgagttcaattttgatacactgtccgtgtaaaaaaatgttacatcgtcaaggaatgacaacaaatcatgtgtgactttaaaagtagttatgatta 34338748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 2309200 - 2309154
Alignment:
Q  141 atgtgtgactttagaagtagttat-gattacagtcaaacgtttttaa 186  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||||    
T  2309200 atgtgtgactttagaagtagttatcgattacagccaaatgtttttaa 2309154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 43059505 - 43059451
Alignment:
Q  144 tgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgat 198  Q
    ||||||||||||||||||||| |||| |||||||  ||||| ||||| |||||||    
T  43059505 tgtgactttagaagtagttattattaaagtcaaagttttttgatgatttgacgat 43059451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 29705948 - 29705899
Alignment:
Q  141 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgat 190  Q
    |||| ||||||||||||| |||||||| | |||||||||||| |||||||    
T  29705948 atgtatgactttagaagtggttatgataaaagtcaaacgtttataatgat 29705899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 4670602 - 4670657
Alignment:
Q  82 aattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaa 138  Q
    ||||||||||||| ||||||||||||| | ||||||  |||| ||||||||||||||    
T  4670602 aattttgatatatcgtcagtgtaaaaa-gttttacatggtcaacaaatcacaaccaa 4670657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 16168376 - 16168305
Alignment:
Q  127 aatcacaaccaaccatgtgtg--actttagaagtagttatgattacagtcaaacgtttttaatgatctgacg 196  Q
    |||||||||||| ||||||||  ||||||  | |||| ||||||| ||||||| |||||||||||| |||||    
T  16168376 aatcacaaccaatcatgtgtgtcactttaatattagtgatgattaaagtcaaatgtttttaatgatttgacg 16168305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 31188938 - 31188874
Alignment:
Q  141 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgatt 205  Q
    |||||||||||| |||||| ||||||||  ||| |||| ||| |||||||||||| || ||||||    
T  31188938 atgtgtgactttcgaagtaattatgattgaagttaaacatttgtaatgatctgacaattatgatt 31188874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 733662 - 733580
Alignment:
Q  125 caaatcacaaccaaccat--gtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgatt 205  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||| ||||  |||||||||||||||| ||| | ||||||    
T  733662 caaatcacaaccaaccatacgtgtgactttagaagtagttacgattaaagtcggacgtttttaatgatctaacggttatgatt 733580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 18361298 - 18361355
Alignment:
Q  140 catgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacga 197  Q
    |||||||||||||  ||||||||||||||| ||| |||||||||||||||||||||||    
T  18361298 catgtgtgactttcaaagtagttatgattaaagttaaacgtttttaatgatctgacga 18361355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 31650352 - 31650307
Alignment:
Q  146 tgactttagaagtagttatgattacagtcaaacgtttttaatgatc 191  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||    
T  31650352 tgactttagaagtagttatgattaaagtcaaacatttttaatgatc 31650307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 8783051 - 8782972
Alignment:
Q  119 cgtcagcaaatcacaaccaaccatgtgt--gactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgat 198  Q
    ||||| |||||||||||||| ||| | |  |||||| |||||||||||||||| |||||||  |||||||||||| ||||||    
T  8783051 cgtcaacaaatcacaaccaatcatatatatgacttttgaagtagttatgattaaagtcaaa--tttttaatgatcggacgat 8782972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 25094709 - 25094772
Alignment:
Q  142 tgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgatt 205  Q
    |||||||||||| ||||| ||||||||| |||||||| | |||||||||  |||||| ||||||    
T  25094709 tgtgtgactttaaaagtacttatgattaaagtcaaacatgtttaatgattagacgattatgatt 25094772  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 7952376 - 7952307
Alignment:
Q  142 tgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattga 211  Q
    |||||| |||||||||| |||||||| | ||| ||| ||||||||||||| |||| | |||||| |||||    
T  7952376 tgtgtggctttagaagttgttatgataaaagtgaaatgtttttaatgatccgacggttatgattgattga 7952307  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 36261960 - 36262039
Alignment:
Q  112 tttacaacgtcagcaaatcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatc 191  Q
    |||||| ||||||||||||| || |||  || |||||||||||||||||||||||||| || |||| |||||||||||||    
T  36261960 tttacaccgtcagcaaatcagaaacaattatatgtgactttagaagtagttatgattaaagccaaatgtttttaatgatc 36262039  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 35035691 - 35035571
Alignment:
Q  74 atgagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccat--gtgtgactttagaagtagttatgattaca 171  Q
    |||||||||||||||||| | |||| || ||||||   ||||||  ||||| ||||||||||||| |||  |||||| |||||||||||||||||||| |    
T  35035691 atgagtttaattttgatacactgtcggtataaaaaat-tttacattgtcagtaaatcacaaccaatcatatgtgtgattttagaagtagttatgattaaa 35035593  T
Q  172 gtcaaacgtttttaatgatctg 193  Q
     |||||  |||||| |||||||    
T  35035592 atcaaatatttttattgatctg 35035571  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 18871063 - 18871012
Alignment:
Q  144 tgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgac 195  Q
    ||||||||||||||||||||| ||||  ||||||||| ||||||||||||||    
T  18871063 tgtgactttagaagtagttatcattaaggtcaaacgtgtttaatgatctgac 18871012  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 36639769 - 36639819
Alignment:
Q  141 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatc 191  Q
    ||||||||||||||||||||||||||||| | | ||||||| |||||||||    
T  36639769 atgtgtgactttagaagtagttatgattaaattgaaacgttcttaatgatc 36639819  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 16230759 - 16230827
Alignment:
Q  125 caaatcacaaccaaccatgtgt--gactttagaagtagttatgattacagtcaaacgtttttaatgatc 191  Q
    |||||||||||||| ||| |||  || |||||||||||||||||||| |||||||| |||| |||||||    
T  16230759 caaatcacaaccaatcatatgtttgattttagaagtagttatgattaaagtcaaacattttaaatgatc 16230827  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 16215454 - 16215390
Alignment:
Q  148 actttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaa 212  Q
    |||||||||||||||| ||||  |||||||| |||||||| ||||| | || |||||||||||||    
T  16215454 actttagaagtagttacgattcaagtcaaacatttttaataatctgtcaattatgattcattgaa 16215390  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 16962248 - 16962198
Alignment:
Q  141 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatct 192  Q
    ||||| |||||||||| |||||||||||| ||||||||| ||||||||||||    
T  16962248 atgtgcgactttagaaatagttatgattaaagtcaaacg-ttttaatgatct 16962198  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 7705397 - 7705307
Alignment:
Q  128 atcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgta 218  Q
    |||||||| || |||||||||||||| |||| |||||||| | ||||||| ||||  ||||| |||||  | |||||| ||||| ||||||    
T  7705397 atcacaacaaatcatgtgtgactttaaaagtggttatgataaaagtcaaatgtttccaatgacctgactgttatgattgattgacagtgta 7705307  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 211
Target Start/End: Original strand, 10231799 - 10231935
Alignment:
Q  76 gagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaacc--atgtgtgactttagaagtagttatgattacagt 173  Q
    ||||||||||||||||||||||||||||||||| | ||||||  |||  || || |||| ||| |  |||||||| ||||||| |||||||||| | |||    
T  10231799 gagtttaattttgatatattgtcagtgtaaaaa-gttttacactgtccacatattacaatcaatcatatgtgtgattttagaaatagttatgataaaagt 10231897  T
Q  174 caaacgtttttaatgatctgacgatcatgattcattga 211  Q
    |||| | |||||||||||||| |||  ||||| |||||    
T  10231898 caaatgattttaatgatctgatgattgtgattgattga 10231935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 9529506 - 9529600
Alignment:
Q  99 agtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccat--gtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacg 196  Q
    |||||||||||  |||||| | |||||||||||||||||| |||  ||||||||||| ||||| |||| |    |||||||||||||||||||| |||||    
T  9529506 agtgtaaaaagt-tttacatcatcagcaaatcacaaccaatcatatgtgtgactttaaaagtaattataa----agtcaaacgtttttaatgatgtgacg 9529600  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 5129712 - 5129658
Alignment:
Q  142 tgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacg 196  Q
    |||||||||||||||||| |||||||||  |||||| |||||| ||||| |||||    
T  5129712 tgtgtgactttagaagtatttatgattaaggtcaaatgttttttatgatatgacg 5129658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 35991377 - 35991414
Alignment:
Q  161 ttatgattacagtcaaacgtttttaatgatctgacgat 198  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  35991377 ttattattagagtcaaacgtttttaatgatctgacgat 35991414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 44250661 - 44250713
Alignment:
Q  142 tgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctga 194  Q
    ||||||||||||||| |||||||||||| |  ||||| |||||||||| ||||    
T  44250661 tgtgtgactttagaaatagttatgattaaaagcaaacatttttaatgagctga 44250713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 14304015 - 14303921
Alignment:
Q  127 aatcacaaccaaccatgtg--tgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaa 219  Q
    |||||||||||| ||| ||  |||||||| ||||||||||||||| |||||||| ||| ||| |||||||||||  ||||| ||||| |||||||    
T  14304015 aatcacaaccaatcatatgagtgactttaaaagtagttatgattaaagtcaaacttttataacgatctgacgatgctgattgattgacagtgtaa 14303921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 16979581 - 16979664
Alignment:
Q  76 gagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaac--catgtgtgactttagaagt 158  Q
    |||||||||||||||| | |||||||||||||| | ||||||  |||| |||||||||||||||   || |||||||||||||||    
T  16979581 gagtttaattttgatacactgtcagtgtaaaaa-gatttacactgtcaacaaatcacaaccaacaatatatgtgactttagaagt 16979664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 24126957 - 24126880
Alignment:
Q  141 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaa 219  Q
    |||| ||| |||||||||||||||| ||| |||||||  ||||||||||||||| ||| | |||| ||||| |||||||    
T  24126957 atgtttgattttagaagtagttatgtttaaagtcaaa-ttttttaatgatctgatgattaagattgattgatagtgtaa 24126880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 32408133 - 32408099
Alignment:
Q  148 actttagaagtagttatgattacagtcaaacgttt 182  Q
    |||||||||||||||||||||| ||||||||||||    
T  32408133 actttagaagtagttatgattaaagtcaaacgttt 32408099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 15867621 - 15867674
Alignment:
Q  158 tagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattga 211  Q
    |||||||||||| ||||||||  |||||||||| ||||||| |||||| |||||    
T  15867621 tagttatgattaaagtcaaacagttttaatgatatgacgattatgattgattga 15867674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 195
Target Start/End: Original strand, 34796781 - 34796907
Alignment:
Q  70 aataatgagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaacc--atgtgtgactttagaagtagttatgat 167  Q
    ||||||||| |||||||| ||| | ||||| || ||||||  ||||||| ||||||| || ||||||||||  ||| || || |||||| ||||||||||    
T  34796781 aataatgagcttaattttcatacactgtcactgcaaaaagt-tttacaatgtcagcatatgacaaccaaccatatgagttacgttagaattagttatgat 34796879  T
Q  168 tacagtcaaacgtttttaatgatctgac 195  Q
     | | |||||| | ||||||||| ||||    
T  34796880 aaaattcaaacatgtttaatgatatgac 34796907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 1132223 - 1132154
Alignment:
Q  142 tgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattga 211  Q
    |||||| |||||||| |||||||||| | ||||||| |||| ||||||||||||| | |||||| |||||    
T  1132223 tgtgtgtctttagaattagttatgataaaagtcaaatgtttctaatgatctgacggttatgattgattga 1132154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 10997329 - 10997399
Alignment:
Q  141 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattga 211  Q
    |||||| ||||||||| ||| |||||||| ||||  |||||||||||||| | ||||| |||||| |||||    
T  10997329 atgtgtaactttagaaatagatatgattaaagtcttacgtttttaatgatataacgattatgattgattga 10997399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 18966004 - 18966057
Alignment:
Q  151 ttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgat 204  Q
    |||||| |||||| ||||| |||||||| ||||||||||| ||||||| |||||    
T  18966004 ttagaattagttacgattaaagtcaaacatttttaatgatatgacgattatgat 18966057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 48183765 - 48183708
Alignment:
Q  140 catgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgat 198  Q
    |||||||||||||||||||||| ||| | ||  |||||||||||| |||||||||||||    
T  48183765 catgtgtgactttagaagtagtcatgttgactttcaaacgttttt-atgatctgacgat 48183708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 48553069 - 48553131
Alignment:
Q  125 caaatcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaat 187  Q
    |||||||||| ||| ||| |||||||||||||||  ||||||||| | ||||| |||||||||    
T  48553069 caaatcacaatcaatcatatgtgactttagaagtttttatgattaaattcaaatgtttttaat 48553131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 38900055 - 38900006
Alignment:
Q  141 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgat 190  Q
    ||||||||||||| ||||||||| |||   ||||||||||||||||||||    
T  38900055 atgtgtgactttaaaagtagttaggatacaagtcaaacgtttttaatgat 38900006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 43220827 - 43220872
Alignment:
Q  146 tgactttagaagtagttatgattacagtcaaacgtttttaatgatc 191  Q
    |||||||||||||  ||||||||| ||||||||||||||| |||||    
T  43220827 tgactttagaagtgattatgattaaagtcaaacgtttttattgatc 43220872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 44009252 - 44009323
Alignment:
Q  127 aatcacaaccaaccatgtgtg--actttagaagtagttatgattacagtcaaacgtttttaatgatctgacg 196  Q
    |||||||||||| ||||||||  ||||||  | |||| ||||||| ||||||| |||||||||||| |||||    
T  44009252 aatcacaaccaatcatgtgtgtcactttaatattagtgatgattaaagtcaaatgtttttaatgatttgacg 44009323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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