View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2673_low_15 (Length: 446)
Name: NF2673_low_15
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2673_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 8060690 - 8061108
Alignment:
| Q |
1 |
ttgcggtaggtgagaagattttgggtaatggtgtgtcttaactacataaattactctatggtgataaatgggtaaggtgttgtgtcgccgattttgagta |
100 |
Q |
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| T |
8060690 |
ttgcggtagattagaagattttgggtaatggtgtgccttaactacataaattactctatggtgataaatgggtaaggtgttgtgtcgccgattttgagta |
8060789 |
T |
|
| Q |
101 |
gaggtatttgttaaggagatcatttgtatcatctatgtcgaaggattctcaacgtttattcaaaaagttgaaattaattaaaggagatatttatggtgtg |
200 |
Q |
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| T |
8060790 |
gaggtatttgttaaggagatcatttgtatcatctatgtcgaaggattctcaacgtttattcagaaagtttaaattaattaaaggagatatttatggtgtg |
8060889 |
T |
|
| Q |
201 |
agggtgataaatgggctctccctatcacatattttattttcttaca-nnnnnnnnnagacttaatacttaggaggccaattgcatgcagaaagtttagac |
299 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8060890 |
aggatgataaatgggctctccctatcacatattttattttcttacattttttttttagacttaatacttaggaggccaattgcatgcagaaagtttagac |
8060989 |
T |
|
| Q |
300 |
acactctgagaaatcctcaagtgaaattaatgtattatattgttgagtgttttcaattttaaaaatagatgggatactgttgaaaatactgaataaaaaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8060990 |
acactctgagaaatcctcaagtgaaattaatgtattatattgttgagtgttttcaattttaaaaatagatgggatactgttgaaaatactgaataaaaaa |
8061089 |
T |
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| Q |
400 |
ttaatgcattgttttaagt |
418 |
Q |
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| T |
8061090 |
ttaatgcattgttttaagt |
8061108 |
T |
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