View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2673_low_16 (Length: 440)

Name: NF2673_low_16
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2673_low_16
NF2673_low_16
[»] chr7 (14 HSPs)
chr7 (1-423)||(26619094-26619518)
chr7 (1-423)||(26621081-26621505)
chr7 (4-423)||(26608532-26608949)
chr7 (1-119)||(30089725-30089845)
chr7 (1-110)||(20277350-20277461)
chr7 (4-116)||(26224971-26225085)
chr7 (1-116)||(9242474-9242591)
chr7 (1-109)||(4685393-4685503)
chr7 (4-116)||(26205408-26205522)
chr7 (1-116)||(10022117-10022234)
chr7 (37-91)||(3374320-3374374)
chr7 (17-116)||(16170264-16170365)
chr7 (1-98)||(8241610-8241707)
chr7 (13-81)||(27135958-27136027)
[»] chr8 (21 HSPs)
chr8 (2-128)||(14997600-14997730)
chr8 (1-116)||(17634461-17634578)
chr8 (1-109)||(25638807-25638917)
chr8 (1-116)||(5528736-5528853)
chr8 (1-109)||(6801820-6801930)
chr8 (1-130)||(25637621-25637754)
chr8 (1-109)||(28249065-28249175)
chr8 (1-107)||(45356102-45356210)
chr8 (16-118)||(31347340-31347444)
chr8 (4-108)||(5650938-5651044)
chr8 (1-97)||(29345444-29345542)
chr8 (37-109)||(6403593-6403666)
chr8 (37-129)||(29553607-29553702)
chr8 (1-116)||(19369900-19370017)
chr8 (13-119)||(5000669-5000777)
chr8 (57-116)||(19448441-19448501)
chr8 (57-116)||(19532575-19532635)
chr8 (1-116)||(18766910-18767027)
chr8 (13-89)||(31369108-31369185)
chr8 (67-119)||(29118587-29118639)
chr8 (1-77)||(6223434-6223511)
[»] chr5 (20 HSPs)
chr5 (1-116)||(17037536-17037653)
chr5 (6-119)||(31571019-31571138)
chr5 (15-112)||(30786264-30786363)
chr5 (1-109)||(5079054-5079164)
chr5 (37-97)||(12042204-12042264)
chr5 (15-128)||(9354393-9354510)
chr5 (48-116)||(31069000-31069069)
chr5 (15-97)||(9333565-9333648)
chr5 (45-119)||(18191884-18191959)
chr5 (1-97)||(7410837-7410934)
chr5 (1-110)||(19984994-19985105)
chr5 (37-90)||(10869457-10869510)
chr5 (48-109)||(16411591-16411652)
chr5 (69-130)||(38450025-38450089)
chr5 (39-116)||(23679434-23679512)
chr5 (39-116)||(23855299-23855377)
chr5 (37-95)||(40402036-40402094)
chr5 (67-119)||(12004567-12004619)
chr5 (37-79)||(42076078-42076120)
chr5 (37-81)||(37233061-37233105)
[»] chr4 (13 HSPs)
chr4 (47-119)||(4881106-4881179)
chr4 (1-119)||(4904130-4904250)
chr4 (1-94)||(21539262-21539355)
chr4 (1-116)||(47066024-47066141)
chr4 (1-116)||(53300344-53300461)
chr4 (5-89)||(24558989-24559074)
chr4 (1-107)||(43600269-43600377)
chr4 (37-97)||(48464053-48464113)
chr4 (1-116)||(1152037-1152154)
chr4 (1-116)||(1684942-1685059)
chr4 (66-119)||(4923689-4923743)
chr4 (1-119)||(37750980-37751099)
chr4 (50-119)||(26075290-26075360)
[»] chr1 (16 HSPs)
chr1 (1-119)||(18308138-18308258)
chr1 (41-116)||(37097371-37097447)
chr1 (37-109)||(5911691-5911764)
chr1 (1-119)||(39368630-39368750)
chr1 (15-89)||(3399643-3399718)
chr1 (1-97)||(897468-897564)
chr1 (13-89)||(12189973-12190050)
chr1 (13-116)||(16222771-16222876)
chr1 (18-109)||(1843953-1844045)
chr1 (37-109)||(15214327-15214400)
chr1 (1-97)||(28636916-28637013)
chr1 (37-129)||(17112903-17112998)
chr1 (50-116)||(51758746-51758813)
chr1 (14-97)||(13208625-13208709)
chr1 (37-89)||(15204615-15204667)
chr1 (50-115)||(15193913-15193979)
[»] chr6 (21 HSPs)
chr6 (1-109)||(16734805-16734915)
chr6 (1-116)||(12591826-12591943)
chr6 (1-109)||(11936757-11936867)
chr6 (13-97)||(23264498-23264583)
chr6 (1-96)||(1942583-1942679)
chr6 (15-109)||(15361715-15361811)
chr6 (37-115)||(15690432-15690511)
chr6 (37-119)||(23904379-23904462)
chr6 (1-109)||(6684094-6684203)
chr6 (1-97)||(11948737-11948834)
chr6 (13-129)||(29667917-29668039)
chr6 (37-119)||(9631182-9631265)
chr6 (1-130)||(14669336-14669469)
chr6 (41-98)||(30481259-30481316)
chr6 (1-116)||(17719713-17719830)
chr6 (60-119)||(4591140-4591200)
chr6 (15-109)||(6346862-6346958)
chr6 (37-91)||(10935808-10935862)
chr6 (41-87)||(34374848-34374894)
chr6 (37-89)||(4485592-4485644)
chr6 (14-77)||(11655038-11655102)
[»] chr3 (18 HSPs)
chr3 (13-97)||(26707872-26707957)
chr3 (1-107)||(2550168-2550276)
chr3 (1-119)||(9633432-9633552)
chr3 (13-89)||(5498499-5498576)
chr3 (1-116)||(13845985-13846102)
chr3 (37-116)||(1627974-1628054)
chr3 (1-109)||(7407744-7407854)
chr3 (37-97)||(16457358-16457418)
chr3 (1-109)||(1654576-1654686)
chr3 (39-129)||(27259474-27259567)
chr3 (1-104)||(2943204-2943309)
chr3 (1-97)||(36035302-36035399)
chr3 (53-119)||(36035462-36035529)
chr3 (15-78)||(27713443-27713507)
chr3 (37-96)||(35082990-35083049)
chr3 (50-119)||(36035009-36035079)
chr3 (50-109)||(1613253-1613313)
chr3 (3-97)||(2179938-2180035)
[»] chr2 (12 HSPs)
chr2 (1-119)||(7702419-7702539)
chr2 (3-119)||(24479142-24479260)
chr2 (1-116)||(30266996-30267113)
chr2 (1-116)||(44920951-44921067)
chr2 (15-89)||(41573414-41573489)
chr2 (1-109)||(31342706-31342816)
chr2 (37-109)||(40016591-40016664)
chr2 (36-119)||(27151258-27151341)
chr2 (37-127)||(7718167-7718258)
chr2 (37-119)||(11017447-11017530)
chr2 (1-119)||(22966513-22966635)
chr2 (1-97)||(15513680-15513777)
[»] scaffold0576 (1 HSPs)
scaffold0576 (15-109)||(6699-6795)
[»] scaffold0684 (1 HSPs)
scaffold0684 (1-116)||(737-854)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-97)||(40688-40785)


Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 26619094 - 26619518
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttacctacaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaatttcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26619094 tgtaactaaagttctttagtaacataggatttacctacaattgttcaaatgttaataaatttaatcagtaacatttttcttgatttagtaacaatttcaa 26619193  T
Q  101 gtgttactagatgtcaatt--gttgtagtgtgtatttgatcaacaatattgaccaaatacgtgagttgttcaatgaatataaaaggtgnnnnnnnnnncc 198  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||           |    
T  26619194 gtgttactagatgtcaattatgttgtagtgtgtatttgatcaacaatattggccaaatacgtaggttgttcaatgaatataaaaggtgttttttttcttc 26619293  T
Q  199 ttataatagtgaccatagagtttagcttataaaaacggatgtcattgtcttgtgacttgaatctaactcttgggcagagggtgtagcttataaaattgga 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26619294 ttataatagtgaccatagagtttagcttataaaaacggatgtcattgtcttgtgacttgaatctaactcttgagcagagggtgtagcttataaaattgga 26619393  T
Q  299 tgtcattgtctcatgacttgaatctaactcttgattaattaatcttgctttcatgtcccaatactattgttcttgtgaattttagaaataattgactcga 398  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |    
T  26619394 tgtcattgtctcatgacttgaatctaactcttgattgattaatcttgctttcatgtcccaatactattgttcttgtgaattttagaaatagatgactcaa 26619493  T
Q  399 ttgcgtagctctcatataaagataa 423  Q
    |||| ||||||||| ||||||||||    
T  26619494 ttgcatagctctcacataaagataa 26619518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 26621081 - 26621505
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaattt-c 98  Q
    ||||||||||| ||||||||||||| |  |||| ||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |    
T  26621081 tgtaactaaagctctttagtaacatggcttttatctaacaattgtttaaatgttgctaaatttaatcagtaacatttttcttaatttagtaacaattttc 26621180  T
Q  99 aagtgttactagatgtcaatt--gttgtagtgtgtatttgatcaacaatattgaccaaatacgtgagttgttcaatgaatataaaaggtgnnnnnnnnnn 196  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||              
T  26621181 aagtgttactagatgtccattaagttgtagtgtgtatttgatcaacattattgaccaaatacgtaacttgttcaatgaatataaaaggtgtttttttctt 26621280  T
Q  197 ccttataatagtgaccatagagtttagcttataaaaacggatgtcattgtcttgtgacttgaatctaactcttgggcagagggtgtagcttataaaattg 296  Q
     ||||||||| |||  | || || ||| ||||||||| ||||||||||||||  | |||| |||||||||||| ||||||||||||||||||||||| ||    
T  26621281 -cttataatattgattagagggtgtagtttataaaaatggatgtcattgtctcattacttaaatctaactctttggcagagggtgtagcttataaaaatg 26621379  T
Q  297 gatgtcattgtctcatgacttgaatctaactcttgattaattaatcttgctttcatgtcccaatactattgttcttgtgaattttagaaataattgactc 396  Q
    ||| | |||||||||||||||||||||| || || ||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||  ||| |     
T  26621380 gattttattgtctcatgacttgaatctatcttttaattgatcaatcttgctttcatgtccc-atactattgttcttgtgaattttagaaatagatgattt 26621478  T
Q  397 gattgcgtagctctcatataaagataa 423  Q
    ||||| |||| ||||| ||||||||||    
T  26621479 gattgtgtaggtctcacataaagataa 26621505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 423
Target Start/End: Original strand, 26608532 - 26608949
Alignment:
Q  4 aactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaattt-caag 101  Q
    |||||||| ||||||||||||| || |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||| |||     
T  26608532 aactaaagctctttagtaacatgggctttatctaacaattgttcaaatgttactaaatttaatcagtaacatttttcttgatttcataacaattttcaaa 26608631  T
Q  102 tgttactagatgtcaatt--gttgtagtgtgtatttgatcaacaatattgaccaaatacgtgagttgttcaatgaatataaaaggtgnnnnnnnnnncct 199  Q
    ||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||| |||| || ||||||||||||| |||          | |    
T  26608632 tgttactagatgtcaattatgttgtagtgtgtatttgatcaacattattgaccaaatacgtaagttatttaatgaatataaaatgtgttttttccttc-t 26608730  T
Q  200 tataatagtgaccatagagtttagcttataaaaacggatgtcattgtcttgtgacttgaatctaactcttgggcagagggtgtagcttataaaattggat 299  Q
    || |||||||| || || || | ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||    |||||||||||||| |||||    
T  26608731 taaaatagtgagcagagggtgttgcttataaaaatggatgtcattgtctcgtgacttgaatctaacttttgggcag----tgtagcttataaaaatggat 26608826  T
Q  300 gtcattgtctcatgacttgaatctaactcttgattaattaatcttgctttcatgtcccaatactattgttcttgtgaattttagaaataattgactcgat 399  Q
    ||||||||||||| |||||||||||||| |||||| || ||||||||||||||| ||  |||| ||||||||||||||||||| |||||  |||||||||    
T  26608827 gtcattgtctcataacttgaatctaacttttgattgatcaatcttgctttcatgacctgataccattgttcttgtgaatttta-aaatagatgactcgat 26608925  T
Q  400 tgcgtagctctcatataaagataa 423  Q
    ||||||||| ||| ||||||||||    
T  26608926 tgcgtagctttcacataaagataa 26608949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 30089845 - 30089725
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaaca-atttc 98  Q
    ||||||||||| ||||||||||||| || ||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||  ||||    
T  30089845 tgtaactaaagctctttagtaacatgggcttttcctaacaattgttcaaatgttactaaatataatcagtaacatttttcttgatttagtaacagttttc 30089746  T
Q  99 aagtgttactagatgtcaatt 119  Q
    |||||||||||||||||||||    
T  30089745 aagtgttactagatgtcaatt 30089725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 20277350 - 20277461
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||| ||||||||||||   | |||||||| |||||||||||||||||||||||||||| | ||| |||||| |||||||||| |||| ||||    
T  20277350 tgtaactaaagctctttagtaacaggtgctttacctaacaattgtttaaatgttactaaatttaattaataatattttttttgatttagttacaattttc 20277449  T
Q  99 aagtgttactag 110  Q
     |||||||||||    
T  20277450 gagtgttactag 20277461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 26224971 - 26225085
Alignment:
Q  4 aactaaagttctttagtaacataggatttacctac-aattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaag 101  Q
    |||||||  ||||||||||||  || ||||||||  ||||||| || |||||||||||||||| |||| |||||||||||||||||| |||| |||||||    
T  26224971 aactaaaactctttagtaacaccggctttacctaataattgttcaagtgttactaaatttaattagtatcatttttcttgatttagttacaattttcaag 26225070  T
Q  102 tgttactagatgtca 116  Q
    ||||| || ||||||    
T  26225071 tgttattaaatgtca 26225085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 9242474 - 9242591
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||  ||||||||||||| |  |||| ||| |||||||| || |||||| ||||||||| ||||||| ||||||||||||||| |||| ||||    
T  9242474 tgtaactaaaactctttagtaacatggactttatctaacaattgttcaagtgttacaaaatttaattagtaacaattttcttgatttagttacaattttc 9242573  T
Q  99 aagtgttactagatgtca 116  Q
    ||||||| ||| ||||||    
T  9242574 aagtgttgctaaatgtca 9242591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 4685393 - 4685503
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||   ||||||||| |  || |||||||| |||||||| || |||| ||||||||||| | ||||||||||||||||||||| |||| ||||    
T  4685393 tgtaactaaaacactttagtaatacgggctttacctaacaattgttcaagtgttgctaaatttaattactaacatttttcttgatttagttacaattttc 4685492  T
Q  99 aagtgttacta 109  Q
    |||||||||||    
T  4685493 aagtgttacta 4685503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 26205408 - 26205522
Alignment:
Q  4 aactaaagttctttagtaacataggatttacctac-aattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaag 101  Q
    |||||||  ||||||||||||   | ||||||||| |||| || || |||||||||||||||| ||||||||||||||||||||||| | || |||||||    
T  26205408 aactaaaactctttagtaacaccagctttacctaccaatttttcaagtgttactaaatttaattagtaacatttttcttgatttagttataattttcaag 26205507  T
Q  102 tgttactagatgtca 116  Q
    ||| |||| ||||||    
T  26205508 tgtcactaaatgtca 26205522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 10022234 - 10022117
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    |||||||||| |||||||||||||   | |||||||| |||||||| |  |||||||||| ||||| ||||||||||||  ||||||||| |||| ||||    
T  10022234 tgtaactaaaattctttagtaacacgagctttacctaacaattgttcatgtgttactaaacttaattagtaacattttttctgatttagttacaattttc 10022135  T
Q  99 aagtgttactagatgtca 116  Q
    || |||||||| ||||||    
T  10022134 aattgttactaaatgtca 10022117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 3374374 - 3374320
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaa 91  Q
    ||||||||| |||||||||| |||||||||| |||||||||||||||||| ||||    
T  3374374 acaattgttcaaatgttacttaatttaatcaataacatttttcttgatttggtaa 3374320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 16170365 - 16170264
Alignment:
Q  17 tagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgt 114  Q
    ||||||||| |  |||||||| ||||||||||| |||||||||||||||| ||||||| ||||  |||||| || |||| ||||||||||| ||| ||||    
T  16170365 tagtaacattgattttacctaacaattgtttaagtgttactaaatttaattagtaacactttttgtgatttggttacaattttcaagtgttgctaaatgt 16170266  T
Q  115 ca 116  Q
    ||    
T  16170265 ca 16170264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 8241707 - 8241610
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaatttc 98  Q
    ||||||| |||||||||| |||||| |  |||| ||| ||| |||| |||| ||| |||||| ||||||||||| ||||||| ||||||| ||||||||    
T  8241707 tgtaactgaagttctttaataacatggattttatctaacaactgttcaaatattattaaattcaatcagtaaca-ttttcttcatttagttacaatttc 8241610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 27136027 - 27135958
Alignment:
Q  13 tctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttctt 81  Q
    |||||||||||| ||| |||| ||| |||||||| |||||||| || || |||||| |||||||||||||    
T  27136027 tctttagtaacacaggctttatctaacaattgttcaaatgttattagatataatcaataacatttttctt 27135958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 14997730 - 14997600
Alignment:
Q  2 gtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttca 99  Q
    |||||||||| ||||||||||||| || |||||||| ||||| |  |||||||||||| ||||| |||||||||||||||||| ||||||| || |||||    
T  14997730 gtaactaaagctctttagtaacatgggttttacctaacaattctacaaatgttactaattttaaccagtaacatttttcttgaattagtaataattttca 14997631  T
Q  100 agtgttactagatgtcaat--tgttgtagtg 128  Q
    ||||| |||||||||||||  ||||||||||    
T  14997630 agtgtcactagatgtcaatcatgttgtagtg 14997600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 17634461 - 17634578
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    |||||||||| |||||||||||||  || |||||||| |||||||| || ||||| |||||||||| ||||||||||||||||||||||| |||| ||||    
T  17634461 tgtaactaaatttctttagtaacacgggctttacctatcaattgttcaagtgttattaaatttaattagtaacatttttcttgatttagttacaattttc 17634560  T
Q  99 aagtgttactagatgtca 116  Q
    || |||||||| ||||||    
T  17634561 aaatgttactaaatgtca 17634578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 25638917 - 25638807
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||   |||||||||||| || |||||||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||| |||| ||||    
T  25638917 tgtaactaaaacactttagtaacatgggttttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttc 25638818  T
Q  99 aagtgttacta 109  Q
    |||||||||||    
T  25638817 aagtgttacta 25638807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 5528853 - 5528736
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||  |||||||||||| ||  |||| ||| ||||||||| | |||| ||||||||||| ||||||||||||||||||||||| |||| ||||    
T  5528853 tgtaactaaaactctttagtaacacagactttatctaacaattgtttgagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttc 5528754  T
Q  99 aagtgttactagatgtca 116  Q
    ||||||||||| ||||||    
T  5528753 aagtgttactaaatgtca 5528736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 6801820 - 6801930
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaaca-atttc 98  Q
    ||||||||||  ||||||||||||  || |||||||| |||||||| || |||||||||||||||| |||||||||||| |||||||||||| |  ||||    
T  6801820 tgtaactaaaactctttagtaacaggggctttacctaacaattgttcaactgttactaaatttaattagtaacatttttattgatttagtaatagttttc 6801919  T
Q  99 aagtgttacta 109  Q
    |||||||||||    
T  6801920 aagtgttacta 6801930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 25637754 - 25637621
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    |||||||||| |||||||||||||  || |||||||| ||||||||  | |||| ||||||||||| ||||||| ||||||| ||||||| |||| ||||    
T  25637754 tgtaactaaaattctttagtaacacgggctttacctaacaattgttcgagtgttgctaaatttaattagtaacagttttcttaatttagttacaattttc 25637655  T
Q  99 aagtgttactagatgtca--attgttgtagtgtg 130  Q
    ||||||||||| ||||||  ||||| ||||||||    
T  25637654 aagtgttactaaatgtcattattgtagtagtgtg 25637621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 28249065 - 28249175
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||   |||||||||||  || |||||||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||| |||| ||||    
T  28249065 tgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttc 28249164  T
Q  99 aagtgttacta 109  Q
    |||||||||||    
T  28249165 aagtgttacta 28249175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 45356102 - 45356210
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||   |||||||||||  || |||||||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||| |||| ||||    
T  45356102 tgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttc 45356201  T
Q  99 aagtgttac 107  Q
    |||||||||    
T  45356202 aagtgttac 45356210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 31347444 - 31347340
Alignment:
Q  16 ttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatg 113  Q
    ||||||||| |||||||| ||| |||||| | ||||||||||||||||||| |||| ||||||||||||||| || |||| |||||| |||||||| ||     
T  31347444 ttagtaacacaggatttatctaacaattgatcaaatgttactaaatttaattagtagcatttttcttgatttggttacaattttcaattgttactaaatt 31347345  T
Q  114 tcaat 118  Q
    |||||    
T  31347344 tcaat 31347340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 5650938 - 5651044
Alignment:
Q  4 aactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaaca-atttcaag 101  Q
    |||||||| | ||| ||||||  || |||||||| |||||||| ||||||| ||||||| ||| ||||||||||||||||||||||||| |  |||||||    
T  5650938 aactaaagcttttttgtaacaagggttttacctaacaattgttcaaatgttgctaaattgaattagtaacatttttcttgatttagtaatagttttcaag 5651037  T
Q  102 tgttact 108  Q
    |||||||    
T  5651038 tgttact 5651044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 29345542 - 29345444
Alignment:
Q  1 tgtaactaaagttc-tttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaattt 97  Q
    |||||||||||||  |||||||| |  || |||||||| |||||||| ||| ||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  29345542 tgtaactaaagtttgtttagtaagaggggctttacctaacaattgttcaaaggttactaaatttaattagtaatatttttcttgatttagttacaattt 29345444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 6403666 - 6403593
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaac-aatttcaagtgttacta 109  Q
    ||||||| | ||||||||||||||||||| ||||||||||||||| ||||||| || |||||||| ||||||||    
T  6403666 acaattgctcaaatgttactaaatttaattagtaacatttttcttaatttagttacaaatttcaattgttacta 6403593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 29553702 - 29553607
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtcaat--tgttgtagtgt 129  Q
    ||||||| | ||||||| ||||||||||| |||||||||||||||||||| || |||| |||||| |||||||| || |||||  |||||||||||    
T  29553702 acaattgctcaaatgttgctaaatttaattagtaacatttttcttgatttggttacaattttcaattgttactaaatctcaatcatgttgtagtgt 29553607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 19369900 - 19370017
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||  ||||||||||||  |  |||| ||| ||||||||  | |||| | ||||||||| ||||||||||||||||||||||| |||| ||||    
T  19369900 tgtaactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaattttc 19369999  T
Q  99 aagtgttactagatgtca 116  Q
    ||||||| ||| ||||||    
T  19370000 aagtgttgctaaatgtca 19370017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 5000777 - 5000669
Alignment:
Q  13 tctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactag 110  Q
    |||||||||||| ||| || ||||| | |||| | ||||||||||||||||||| ||||||| ||||  |||| ||||||||| |||||| ||| |||||    
T  5000777 tctttagtaacacaggtttcacctaactattgctcaaatgttactaaatttaattagtaacaattttgatgatgtagtaacaattttcaattgtaactag 5000678  T
Q  111 atgtcaatt 119  Q
    || ||||||    
T  5000677 atctcaatt 5000669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 19448501 - 19448441
Alignment:
Q  57 aaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtca 116  Q
    ||||||||| ||||||||||||||||||||||| |||| ||||||||||| ||| ||||||    
T  19448501 aaatttaattagtaacatttttcttgatttagttacaattttcaagtgttgctaaatgtca 19448441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 19532575 - 19532635
Alignment:
Q  57 aaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtca 116  Q
    ||||||||| ||||||||||||||||||||||| |||| ||||||||||| ||| ||||||    
T  19532575 aaatttaattagtaacatttttcttgatttagttacaattttcaagtgttgctaaatgtca 19532635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 18767027 - 18766910
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||  ||||||||||||     |||||||| ||||||||| | |||| | ||||||||| | ||| ||||||||||||||||| |||| ||||    
T  18767027 tgtaactaaaactctttagtaacacgtactttacctaacaattgtttgagtgttgcaaaatttaattaataatatttttcttgatttagttacaattttc 18766928  T
Q  99 aagtgttactagatgtca 116  Q
    ||||||| ||| ||||||    
T  18766927 aagtgttgctaaatgtca 18766910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 31369108 - 31369185
Alignment:
Q  13 tctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagt 89  Q
    |||||||||||||| | ||||| || || |||||||||||| |||||| ||||| |||||||||| || |||||||||    
T  31369108 tctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttatcgtgatttagt 31369185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 29118587 - 29118639
Alignment:
Q  67 agtaacatttttcttgatttagtaacaatttcaagtgttactagatgtcaatt 119  Q
    ||||||||| |||||| ||||| |||||||| |||||||||||||| ||||||    
T  29118587 agtaacattcttcttggtttagcaacaattttaagtgttactagatctcaatt 29118639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 6223511 - 6223434
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttt 77  Q
    ||||||||||  ||||||||||||   | |||||||| ||||| |  |||||||||||||||||||||||||| ||||    
T  6223511 tgtaactaaaactctttagtaacacgcgctttacctaacaattttacaaatgttactaaatttaatcagtaacgtttt 6223434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 17037653 - 17037536
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaac-aatttc 98  Q
    ||||||||||  ||||||||||||  |  |||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||| || | ||||    
T  17037653 tgtaactaaaactctttagtaacactgactttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagttacgattttc 17037554  T
Q  99 aagtgttactagatgtca 116  Q
    ||||||||||| ||||||    
T  17037553 aagtgttactaaatgtca 17037536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 31571138 - 31571019
Alignment:
Q  6 ctaaagttctttagtaacataggatttaccta-caattgtt----taaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttca 99  Q
    |||||| ||||||||||||| || |||||||| |||||||     || |||||||||| ||||||||||||||||||||||| |||| |||||| |||||    
T  31571138 ctaaagctctttagtaacatgggttttacctaacaattgtacatatatatgttactaattttaatcagtaacatttttcttgttttaataacaattttca 31571039  T
Q  100 agtgttactagatgtcaatt 119  Q
    ||||||||||||||||||||    
T  31571038 agtgttactagatgtcaatt 31571019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 30786363 - 30786264
Alignment:
Q  15 tttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagat 112  Q
    ||||||||||  | ||||||||| ||||| || ||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||||||||||    
T  30786363 tttagtaacaaggcatttacctaacaattattcaaatgttactaaattgaatcagtaacatttttcttgattaagttacaattttcaagtgttactagat 30786264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 5079054 - 5079164
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||   |||||||||||  || |||||||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||| |||| ||||    
T  5079054 tgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttc 5079153  T
Q  99 aagtgttacta 109  Q
    |||||||||||    
T  5079154 aagtgttacta 5079164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 12042204 - 12042264
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaattt 97  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  12042204 acaattgttcaaatgttactaaattgaatcagtaacatttttcttgatttagttacaattt 12042264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 9354393 - 9354510
Alignment:
Q  15 tttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagat 112  Q
    ||||||||||| || |||||||| |||||| | |||||||| |||||||||| ||||||||||||||||||| ||| |||| |||||| |||||||| ||    
T  9354393 tttagtaacatgggctttacctaacaattgctcaaatgttattaaatttaattagtaacatttttcttgattcagttacaattttcaattgttactaaat 9354492  T
Q  113 gtcaat--tgttgtagtg 128  Q
     |||||  ||||||||||    
T  9354493 ctcaatcatgttgtagtg 9354510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 31069000 - 31069069
Alignment:
Q  48 aatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtca 116  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||| ||||||    
T  31069000 aatgttactaaatttaattagtaacatttttcttgatttagttacaatttttaagtgttactaaatgtca 31069069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 9333565 - 9333648
Alignment:
Q  15 tttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaattt 97  Q
    ||||||||||| |  |||||||| |||||| | ||||||||||||||||||| |||||||||||||||||||| || |||||||    
T  9333565 tttagtaacatcgactttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttgattttgttacaattt 9333648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 18191884 - 18191959
Alignment:
Q  45 ttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtcaatt 119  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| |||| |||||| |||||||| || ||||||    
T  18191884 ttaaatgttactaaatttaattagtaacatttttcttaatttagttacaattttcaattgttactaaatctcaatt 18191959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 7410934 - 7410837
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaattt 97  Q
    ||||||||||   |||||||||||  || |||||||| |||||||| || |||| ||||||||||| |||||||||||| |||||||||| |||||||    
T  7410934 tgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacattttttttgatttagttacaattt 7410837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 19985105 - 19984994
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttag-taacaatttc 98  Q
    ||||||||||  ||||||||||| | |  |||||||| ||||| || |||||||||||||| |||| ||||||||||| |||||||||| || || ||||    
T  19985105 tgtaactaaaactctttagtaacctggactttacctaacaattattcaaatgttactaaatctaattagtaacattttccttgatttagttaccattttc 19985006  T
Q  99 aagtgttactag 110  Q
     |||||||||||    
T  19985005 gagtgttactag 19984994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 10869510 - 10869457
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagta 90  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||||    
T  10869510 acaattgttcaaatgttactaaatttaattagtaacaattttcatgatttagta 10869457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 16411652 - 16411591
Alignment:
Q  48 aatgttactaaatttaatcagtaacatttttcttgatttagtaacaatttcaagtgttacta 109  Q
    |||||||||| || |||||||||||||||||| ||||||||||| | |||||| ||||||||    
T  16411652 aatgttactagatataatcagtaacatttttcgtgatttagtaatattttcaaatgttacta 16411591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 38450025 - 38450089
Alignment:
Q  69 taacatttttcttgatttagtaacaa-tttcaagtgttactagatgtcaat--tgttgtagtgtg 130  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||||||  ||||||||||||    
T  38450025 taacatttttcttgatttggtaacaattttcatgtgttactagatgtcaattatgttgtagtgtg 38450089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 23679512 - 23679434
Alignment:
Q  39 aattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtca 116  Q
    |||||||  |||||| | ||||||||| | ||||||||||||||||||||| |||| ||||||||||| ||| ||||||    
T  23679512 aattgttcgaatgttgcaaaatttaattaataacatttttcttgatttagttacaattttcaagtgttgctaaatgtca 23679434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 23855299 - 23855377
Alignment:
Q  39 aattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtca 116  Q
    |||||||  |||||| | ||||||||| | ||||||||||||||||||||| |||| ||||||||||| ||| ||||||    
T  23855299 aattgttcgaatgttgcaaaatttaattaataacatttttcttgatttagttacaattttcaagtgttgctaaatgtca 23855377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 40402036 - 40402094
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaat 95  Q
    ||||||||| ||| || |||||||||||| ||||||||||||||| ||||||| |||||    
T  40402036 acaattgttcaaacgtaactaaatttaattagtaacatttttctttatttagtcacaat 40402094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 12004567 - 12004619
Alignment:
Q  67 agtaacatttttcttgatttagtaacaatttcaagtgttactagatgtcaatt 119  Q
    ||||||||||||||||||||||| | |||||||| |||||||| || ||||||    
T  12004567 agtaacatttttcttgatttagttagaatttcaattgttactaaatttcaatt 12004619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 42076120 - 42076078
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttc 79  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||    
T  42076120 acaattgttcaaatgttactaaatttaattagtaacaattttc 42076078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 37233105 - 37233061
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttctt 81  Q
    ||||||| | ||||||||||||||||||| |||||| ||||||||    
T  37233105 acaattgctcaaatgttactaaatttaattagtaacttttttctt 37233061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 4881106 - 4881179
Alignment:
Q  47 aaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtcaatt 119  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  4881106 aaatattactaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactggatgtcaatt 4881179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 4904130 - 4904250
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    |||||||||||  |||||||||||   | |||||||| |||||||  ||||||||||||||||||||||||||||||||| |||||||||||||| |||     
T  4904130 tgtaactaaagcactttagtaacaagtgctttacctaacaattgtacaaatgttactaaatttaatcagtaacatttttcatgatttagtaacaattttt 4904229  T
Q  99 aagtgttactagatgtcaatt 119  Q
    |||||||||| ||||| ||||    
T  4904230 aagtgttactggatgttaatt 4904250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 21539262 - 21539355
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa 94  Q
    ||||||||||  |||||||||||| |||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  21539262 tgtaactaaatctctttagtaaca-aggacttatctaacaattgtttaaatgttactaaatttaatcagtaacattttccttgatttagttacaa 21539355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 47066024 - 47066141
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||  ||||| ||||||  || |||||||| |||||||| |  |||||||||||||||| | ||||||||||||||||||||| |||| ||||    
T  47066024 tgtaactaaaactctttggtaacacgggctttacctaacaattgttcaggtgttactaaatttaattactaacatttttcttgatttagttacaattttc 47066123  T
Q  99 aagtgttactagatgtca 116  Q
    ||||||||||| ||||||    
T  47066124 aagtgttactaaatgtca 47066141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 53300461 - 53300344
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||  ||||| ||||||  || |||||||| ||||||||||  |||||||||||||||| | ||||||||||||||||||| | |||| ||||    
T  53300461 tgtaactaaaactctttggtaacacgggctttacctaacaattgtttaggtgttactaaatttaattactaacatttttcttgatttaattacaattttc 53300362  T
Q  99 aagtgttactagatgtca 116  Q
    ||||||||||| ||||||    
T  53300361 aagtgttactaaatgtca 53300344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 24558989 - 24559074
Alignment:
Q  5 actaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagt 89  Q
    |||||| ||||||||||||| ||   ||||||| |||| ||| ||||||||||||||||||| |||||||||||||||||||||||    
T  24558989 actaaaattctttagtaacacagccgttacctaacaatcgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 24559074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 43600377 - 43600269
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||   |||||||||||  || |||||||| |||||||| || | || ||||||||||| ||||||||||||||||||||||| |||| ||||    
T  43600377 tgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagttttgctaaatttaattagtaacatttttcttgatttagttacaattttc 43600278  T
Q  99 aagtgttac 107  Q
    |||||||||    
T  43600277 aagtgttac 43600269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 48464113 - 48464053
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaattt 97  Q
    ||||||||| ||||||||||||||||||| |||||||||||| || |||||||||||||||    
T  48464113 acaattgttcaaatgttactaaatttaattagtaacatttttatttatttagtaacaattt 48464053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 1152154 - 1152037
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||  ||||||||||||  |  |||| ||| ||||||||| | |||| | ||||||||| ||||||||||||||| ||||||| |||| ||||    
T  1152154 tgtaactaaaactctttagtaacacggactttatctaacaattgtttgagtgttgcaaaatttaattagtaacatttttcttaatttagttacaattttc 1152055  T
Q  99 aagtgttactagatgtca 116  Q
    ||||||| ||| ||||||    
T  1152054 aagtgttgctaaatgtca 1152037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 1684942 - 1685059
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||  ||||||||||||  |  |||| ||| ||||||||  | |||| | ||||||||| ||||||||||||||||||||||| |||| ||||    
T  1684942 tgtaactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaattttc 1685041  T
Q  99 aagtgttactagatgtca 116  Q
    ||||||| ||| ||||||    
T  1685042 aagtgttgctaaatgtca 1685059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 4923689 - 4923743
Alignment:
Q  66 cagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtcaatt 119  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| ||||| ||||    
T  4923689 cagtaacatttttcttgatttagtaacaatttttaagtgttactggatgttaatt 4923743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 37750980 - 37751099
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||| |  |||||||||| || |||| ||| ||||||   |||||||||| | |||||| |||||||||||| |||||||||| |||| ||||    
T  37750980 tgtaactaaagcttcttagtaacattggctttatctaacaattgcgcaaatgttactgattttaattagtaacattttt-ttgatttagtgacaattttc 37751078  T
Q  99 aagtgttactagatgtcaatt 119  Q
    |  ||||||| ||||||||||    
T  37751079 atatgttactggatgtcaatt 37751099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 26075290 - 26075360
Alignment:
Q  50 tgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtcaatt 119  Q
    |||||||||||||| | ||||||  |||||||||| ||||||||| |||||| ||||| ||||| ||||||    
T  26075290 tgttactaaatttacttagtaaccattttcttgatctagtaacaattttcaattgttattagatttcaatt 26075360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 18308258 - 18308138
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    |||||||||||  ||| ||||||| ||| |||||||| |||||||  |||||||| ||| | ||||| ||||||||||||||||||||||||||| ||||    
T  18308258 tgtaactaaagcccttcagtaacacaggctttacctaacaattgtagaaatgttaataattgtaatctgtaacatttttcttgatttagtaacaattttc 18308159  T
Q  99 aagtgttactagatgtcaatt 119  Q
    || ||||||||||||||||||    
T  18308158 aaatgttactagatgtcaatt 18308138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 37097371 - 37097447
Alignment:
Q  41 ttgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtca 116  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||||||    
T  37097371 ttgttcaaatgttactaaattttatcagtaacatttttcttgatttagttacaattttcaagtgttactaaatgtca 37097447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 5911691 - 5911764
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttag-taacaatttcaagtgttacta 109  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||    
T  5911691 acaattgttcaagtgttactaaatttaatcagtaacatttttcttgatttagttaaaattttcaagtgttacta 5911764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 39368630 - 39368750
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaaca-atttc 98  Q
    ||||||| ||| ||||||||| |||  | ||| |||| ||||||| ||||||| ||||| |||||| |||||||||||||||||||||||||||  ||||    
T  39368630 tgtaactgaagctctttagtagcatgtgctttgcctaacaattgtataaatgtgactaattttaattagtaacatttttcttgatttagtaacatttttc 39368729  T
Q  99 aagtgttactagatgtcaatt 119  Q
    | | |||||||||||||||||    
T  39368730 atgggttactagatgtcaatt 39368750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 3399718 - 3399643
Alignment:
Q  15 tttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagt 89  Q
    |||||||||||||  |||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||||    
T  3399718 tttagtaacatagattttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcatgatttagt 3399643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 897564 - 897468
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaattt 97  Q
    |||||||| || ||||||||||||| | | ||||||| |||||||| || |||||||||||||||| || |||||||||||| |||||||||||||||    
T  897564 tgtaactatagctctttagtaacat-gaacttacctaacaattgttcaattgttactaaatttaattaggaacatttttcttcatttagtaacaattt 897468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 12190050 - 12189973
Alignment:
Q  13 tctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagt 89  Q
    ||||||||||||  || |||||||| |||||||| ||||||||||||||||||| ||||| |||||||||||||||||    
T  12190050 tctttagtaacacgggctttacctaacaattgttcaaatgttactaaatttaattagtaatatttttcttgatttagt 12189973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 16222876 - 16222771
Alignment:
Q  13 tctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactag 110  Q
    ||||||||||||  || |||||||| ||||| || || ||||||||||||| || ||||||||||||||||||||||| |||| |||||| ||||||||     
T  16222876 tctttagtaacacgggctttacctaacaattattcaagtgttactaaattttattagtaacatttttcttgatttagttacaattttcaaatgttactaa 16222777  T
Q  111 atgtca 116  Q
    ||||||    
T  16222776 atgtca 16222771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 1844045 - 1843953
Alignment:
Q  18 agtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaatttcaagtgttacta 109  Q
    |||||||| || |||||||| |||||||| ||||||||||||||| |||||||||||||||||||  |  ||| ||||||| |||||||||||    
T  1844045 agtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaacatttttcttattccagttacaattttaagtgttacta 1843953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 15214400 - 15214327
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttacta 109  Q
    ||||||||| |||| |||||||||||||| ||||| |||||||||||||||||  ||| |||||||||||||||    
T  15214400 acaattgttcaaatattactaaatttaattagtaaaatttttcttgatttagttgcaattttcaagtgttacta 15214327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28637013 - 28636916
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaattt 97  Q
    ||||||||||  ||||||| ||||  |  |||||||| ||||| || ||||||||||||||| ||| ||||||||||||||||||||||| |||||||    
T  28637013 tgtaactaaatctctttagcaacagtgactttacctaacaattattcaaatgttactaaattgaattagtaacatttttcttgatttagttacaattt 28636916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 17112998 - 17112903
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtcaat--tgttgtagtgt 129  Q
    ||||||||| || |||||| ||||||||  ||||  |||||||||||||||||||||| |||||| | ||||||||| |||||  |||||||||||    
T  17112998 acaattgttcaagtgttacaaaatttaactagtactatttttcttgatttagtaacaattttcaattattactagatttcaattatgttgtagtgt 17112903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 51758813 - 51758746
Alignment:
Q  50 tgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtca 116  Q
    |||| ||||||||||| | ||||||||||||||||||||| |||| |||||| |||||||| ||||||    
T  51758813 tgttgctaaatttaattactaacatttttcttgatttagttacaattttcaaatgttactaaatgtca 51758746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 13208709 - 13208625
Alignment:
Q  14 ctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaattt 97  Q
    |||||||||||  || |||||||| |||| ||| || || ||||||||||||| ||||||||||||||| ||||| | |||||||    
T  13208709 ctttagtaacacgggttttacctaacaatggttcaagtggtactaaatttaattagtaacatttttcttaatttaattacaattt 13208625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 15204667 - 15204615
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagt 89  Q
    ||||||||| || |||||||||||||| | || ||||||||||||||||||||    
T  15204667 acaattgttcaagtgttactaaatttagttagcaacatttttcttgatttagt 15204615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 15193979 - 15193913
Alignment:
Q  50 tgttactaaatttaatcagtaacatttttcttgatttagtaac-aatttcaagtgttactagatgtc 115  Q
    ||||| |||||||||| |||||||||||||||||||| ||  | | ||||||||||||||| |||||    
T  15193979 tgttaataaatttaattagtaacatttttcttgatttcgttgctattttcaagtgttactaaatgtc 15193913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 16734915 - 16734805
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||   |||||||||||  || |||||||| |||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||    
T  16734915 tgtaactaaaacactttagtaacacgggctttacctaacaattgttcaaatgttgctaaatttaattagtaacatttttcttgatttagttacaattttc 16734816  T
Q  99 aagtgttacta 109  Q
    |||||||||||    
T  16734815 aagtgttacta 16734805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 12591943 - 12591826
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||  ||||||||||||  || |||||||| ||||||||  |  ||||||||||||||| | ||||||||||||||||||||| |||| ||||    
T  12591943 tgtaactaaaactctttagtaacacgggctttacctaacaattgttcgagcgttactaaatttaattactaacatttttcttgatttagttacaattttc 12591844  T
Q  99 aagtgttactagatgtca 116  Q
    ||||||||||| ||||||    
T  12591843 aagtgttactaaatgtca 12591826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 11936757 - 11936867
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||   |||||||||||  || |||| ||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||| |||| ||||    
T  11936757 tgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttc 11936856  T
Q  99 aagtgttacta 109  Q
    |||||||||||    
T  11936857 aagtgttacta 11936867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 23264498 - 23264583
Alignment:
Q  13 tctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaattt 97  Q
    ||||||||||||  |  |||||||| ||||||||  |||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  23264498 tctttagtaacacggattttacctaacaattgttcgaatgttactaaatttaattagtaacaattttcttgatttagtaacaattt 23264583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 1942679 - 1942583
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaatt 96  Q
    ||||||||||| | |||| ||||| ||| |||||||| |||||| | |||||||| ||||||| |||||||| ||||||||||||||||| ||||||    
T  1942679 tgtaactaaagatatttaataacaaaggttttacctagcaattgctcaaatgttattaaattttatcagtaatatttttcttgatttagttacaatt 1942583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 15361811 - 15361715
Alignment:
Q  15 tttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttacta 109  Q
    ||||||||||  || |||||||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||||    
T  15361811 tttagtaacaccggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaatttttaagtgttacta 15361715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 15690511 - 15690432
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtc 115  Q
    |||||||||| | ||| |||||||||||| ||||||||||||||||||||||| |||| |||||| |||||||| |||||    
T  15690511 acaattgtttgagtgtcactaaatttaattagtaacatttttcttgatttagttacaattttcaaatgttactaaatgtc 15690432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 23904379 - 23904462
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtcaatt 119  Q
    ||||||||| ||||||||||||||| | | |||||| |||||||| |||||||| ||| |||||||||||||||||| ||||||    
T  23904379 acaattgttcaaatgttactaaattgatttagtaacttttttcttcatttagtagcaattttcaagtgttactagatctcaatt 23904462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 6684203 - 6684094
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttacctacaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttca 99  Q
    ||||||||||  ||||||||||||| |  ||||||||  | ||||  | |||||||||||||||| ||||||||||||||||||| ||| |||| ||| |    
T  6684203 tgtaactaaaactctttagtaacatggactttacctaacaatgttcgagtgttactaaatttaattagtaacatttttcttgattaagttacaattttta 6684104  T
Q  100 agtgttacta 109  Q
    ||||||||||    
T  6684103 agtgttacta 6684094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 11948737 - 11948834
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaattt 97  Q
    ||||||||||   |||||||||||  || |||| ||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||| |||||||    
T  11948737 tgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattt 11948834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 29667917 - 29668039
Alignment:
Q  13 tctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttc--ttgatttagtaacaa-tttcaagtgttact 108  Q
    |||||| ||||| | | |||||||| |||||||| ||||||||||||||||||| |||||||||||||  ||||||| || |||| |||||| ||||||     
T  29667917 tctttaataacacaagctttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttttgatttcgttacaattttcaattgttaca 29668016  T
Q  109 agatgtcaat--tgttgtagtgt 129  Q
    |||| |||||  |||||||||||    
T  29668017 agatctcaattatgttgtagtgt 29668039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 9631182 - 9631265
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaaca-atttcaagtgttactagatgtcaatt 119  Q
    ||||||||| ||||||||||||||||| | |||||| || ||||||||||||||| |  ||||||||||||||| || ||||||    
T  9631182 acaattgttcaaatgttactaaatttacttagtaacgttcttcttgatttagtaatagttttcaagtgttactaaatctcaatt 9631265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 14669336 - 14669469
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||  ||||||||||||  |  |||||||| ||||| ||  | |||| | ||||||||| ||||||||||||||||||||||| |||| ||||    
T  14669336 tgtaactaaaactctttagtaacacggactttacctaacaattattcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaattttc 14669435  T
Q  99 aagtgttactagatgtca--attgttgtagtgtg 130  Q
    ||||||| ||| ||||||  ||||| ||||||||    
T  14669436 aagtgttgctaaatgtcattattgtagtagtgtg 14669469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 30481259 - 30481316
Alignment:
Q  41 ttgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaatttc 98  Q
    ||||| || |||||||| ||||||| || |||||||||||||||||||||||||||||    
T  30481259 ttgttcaattgttactagatttaattagcaacatttttcttgatttagtaacaatttc 30481316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 17719713 - 17719830
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||  ||||||||||||  |  |||| ||| ||||||||  | |||| | ||| ||||| ||||||||||||||||||||||| |||| ||||    
T  17719713 tgtaactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaaattaattagtaacatttttcttgatttagttacaattttc 17719812  T
Q  99 aagtgttactagatgtca 116  Q
    ||||||| ||| ||||||    
T  17719813 aagtgttgctaaatgtca 17719830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 4591200 - 4591140
Alignment:
Q  60 tttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtcaatt 119  Q
    ||||||| |||||||||||||||||||||||| || |||||| |||||||| |||| ||||    
T  4591200 tttaatcggtaacatttttcttgatttagtaataattttcaaatgttactaaatgttaatt 4591140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 6346862 - 6346958
Alignment:
Q  15 tttagtaacataggatttacctacaattgtttaaatgttactaaatttaatcagtaacattt-ttcttgatttagtaacaatttcaa-gtgttacta 109  Q
    |||||||||||||| ||||||||  |||  | ||||||||| ||||||||  |||||||||| || |||||||||| ||||||| || |||||||||    
T  6346862 tttagtaacataggctttacctaacatttatcaaatgttacaaaatttaaatagtaacatttatttttgatttagttacaattttaatgtgttacta 6346958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 10935808 - 10935862
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaa 91  Q
    ||||||||| ||||||||||  || |||| ||||||||||||| |||||||||||    
T  10935808 acaattgttcaaatgttactggatataattagtaacatttttcatgatttagtaa 10935862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 34374894 - 34374848
Alignment:
Q  41 ttgtttaaatgttactaaatttaatcagtaacatttttcttgattta 87  Q
    ||||| ||||||||| |||| |||| |||||||||||||||||||||    
T  34374894 ttgttcaaatgttacaaaatataattagtaacatttttcttgattta 34374848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 4485592 - 4485644
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagt 89  Q
    |||||| || |||| |||||||||||||| |||| |||||| |||||||||||    
T  4485592 acaattattcaaatattactaaatttaattagtaccattttccttgatttagt 4485644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 11655038 - 11655102
Alignment:
Q  14 ctttagtaacataggatttacctac-aattgtttaaatgttactaaatttaatcagtaacatttt 77  Q
    ||||||||||||| | ||||||||  ||||||||||||||||||  || |||| |||||||||||    
T  11655038 ctttagtaacatatgttttacctaataattgtttaaatgttactcgatataattagtaacatttt 11655102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 26707957 - 26707872
Alignment:
Q  13 tctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaattt 97  Q
    |||||||||||| ||  |||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  26707957 tctttagtaacagagactttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattt 26707872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 2550276 - 2550168
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||   ||||||||||| ||| |||||||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||| |||| ||||    
T  2550276 tgtaactaaaacactttagtaacacaggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttc 2550177  T
Q  99 aagtgttac 107  Q
    |||||||||    
T  2550176 aagtgttac 2550168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 9633432 - 9633552
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaaca-atttc 98  Q
    ||||||||||  ||||||||||||  || |||||||| ||||||||||||||| |||||||||||| |||||||||||| | |||||||||| |  ||||    
T  9633432 tgtaactaaaactctttagtaacaggggctttacctaacaattgtttaaatgtaactaaatttaattagtaacatttttttcgatttagtaatagttttc 9633531  T
Q  99 aagtgttactagatgtcaatt 119  Q
    ||||||||||| || ||||||    
T  9633532 aagtgttactaaatctcaatt 9633552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 5498576 - 5498499
Alignment:
Q  13 tctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagt 89  Q
    |||||||||||||||| |||||||| |||||||| | | ||||||||||||||| |||||||||||||||||||||||    
T  5498576 tctttagtaacataggttttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagt 5498499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 13846102 - 13845985
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||   |||||||||||  || |||||||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||| |||| ||||    
T  13846102 tgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttc 13846003  T
Q  99 aagtgttactagatgtca 116  Q
    ||||||| ||| ||||||    
T  13846002 aagtgttgctaaatgtca 13845985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 1627974 - 1628054
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtca 116  Q
    ||||||||| || |||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||| ||||||    
T  1627974 acaattgttcaagtgttactaaatttaattagtaatatttttcttgatttagttacaattttcaagtgttactaaatgtca 1628054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 7407744 - 7407854
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||   |||||||||||  || |||||||| |||||||| || |||| ||||||||||| ||||| ||||||||||||||||| |||| ||||    
T  7407744 tgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaatatttttcttgatttagttacaattttc 7407843  T
Q  99 aagtgttacta 109  Q
    |||||||||||    
T  7407844 aagtgttacta 7407854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 16457358 - 16457418
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaattt 97  Q
    ||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  16457358 acaattgctcaaatgttactaaatttaattagtaacatttttcttgatttagttacaattt 16457418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 1654686 - 1654576
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||   ||||| ||||| ||| ||||| || |||||||| || |||| ||||||||||| ||||||||||||||||||||||| |||| ||||    
T  1654686 tgtaactaaaacactttaataacacaggctttacttaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttc 1654587  T
Q  99 aagtgttacta 109  Q
    || ||||||||    
T  1654586 aattgttacta 1654576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 27259474 - 27259567
Alignment:
Q  39 aattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaaca-atttcaagtgttactagatgtcaat--tgttgtagtgt 129  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||| |  |||||| |||||||| || |||||  |||||||||||    
T  27259474 aattgttcaaatgttactaaatttaattagtaacattttgcttgatttagtaatagttttcaattgttactaaatctcaattatgttgtagtgt 27259567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 2943204 - 2943309
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaac-aatttc 98  Q
    ||||||||||   |||||||||||  || || ||||| ||||||||  |||||||||||||||||| ||||||||||||||||||||| | || ||||||    
T  2943204 tgtaactaaaacactttagtaacacgggcttaacctaacaattgttcgaatgttactaaatttaattagtaacatttttcttgatttaattacaaatttc 2943303  T
Q  99 aagtgt 104  Q
    ||||||    
T  2943304 aagtgt 2943309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 36035399 - 36035302
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaattt 97  Q
    ||||||||||| ||||||||||||   | |||||||| |||||||  || |||||||||||||||| ||||  |||||||||||||||||| ||||||    
T  36035399 tgtaactaaagctctttagtaacacgagctttacctaacaattgtacaattgttactaaatttaattagtattatttttcttgatttagtaccaattt 36035302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 36035529 - 36035462
Alignment:
Q  53 tactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtcaatt 119  Q
    |||||||||| |||||||  |||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  36035529 tactaaatttgatcagtattatttttcttgatatagtaacaattttgaagtgttactagatgtcaatt 36035462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 27713443 - 27713507
Alignment:
Q  15 tttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacattttt 78  Q
    |||||||||||||| ||| |||| ||||| |||||||||||||||||||||| |||||| |||||    
T  27713443 tttagtaacataggttttgcctaacaattatttaaatgttactaaatttaattagtaactttttt 27713507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 35083049 - 35082990
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaatt 96  Q
    ||||||||| |||| |||||||||||| | | |||||||||||||||||| |||||||||    
T  35083049 acaattgttcaaatattactaaatttatttactaacatttttcttgattttgtaacaatt 35082990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 36035079 - 36035009
Alignment:
Q  50 tgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtcaatt 119  Q
    |||||||||||||||| ||||  |||||||||||||||||| ||| ||| |||||| | ||||||||||||    
T  36035079 tgttactaaatttaattagtattatttttcttgatttagtaccaattttgaagtgtcattagatgtcaatt 36035009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 1613253 - 1613313
Alignment:
Q  50 tgttactaaatttaatcagtaacatttttcttgatttagtaaca-atttcaagtgttacta 109  Q
    |||||||||||||| | ||||||||||||||||||||||| |||  |||||| ||||||||    
T  1613253 tgttactaaatttatttagtaacatttttcttgatttagttacatttttcaactgttacta 1613313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 2180035 - 2179938
Alignment:
Q  3 taactaaagttctttagtaacataggatttacctac-aattgtttaaatgttactaaatttaatcagtaaca--tttttcttgatttagtaacaattt 97  Q
    ||||||||| ||||||||||||  | ||||||| |  ||||||| ||||| | ||||||||||||| |||||  ||||| || |||||||||||||||    
T  2180035 taactaaagctctttagtaacagggaatttacccaagaattgttcaaatgattctaaatttaatcattaacatttttttttttatttagtaacaattt 2179938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 7702539 - 7702419
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||| |||||||||| || || |||||||| |||||||  |||||||||||| |||||| | |||||||||| || ||||||||| || ||||    
T  7702539 tgtaactaaagctctttagtaatatgggctttacctaacaattgtacaaatgttactaattttaattaataacattttttttaatttagtaataattttc 7702440  T
Q  99 aagtgttactagatgtcaatt 119  Q
    | |||||||||||||||||||    
T  7702439 atgtgttactagatgtcaatt 7702419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 24479260 - 24479142
Alignment:
Q  3 taactaaagttctttagtaacataggatttacctac-aattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaa 100  Q
    ||||||||| ||||||||||||   | ||||||||  ||||||| ||||||||||||||||||| ||||||| || |||||||||||||| || ||||||    
T  24479260 taactaaagctctttagtaacacgagctttacctaagaattgttcaaatgttactaaatttaattagtaacagttatcttgatttagtaataattttcaa 24479161  T
Q  101 gtgttactagatgtcaatt 119  Q
    ||||||||| || ||||||    
T  24479160 gtgttactatatctcaatt 24479142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 30267113 - 30266996
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||  ||||| ||||||  || |||||||| |||||||| |  |||||||||||||||| | ||||||||||||||||||||| |||| ||||    
T  30267113 tgtaactaaaactctttggtaacacgggctttacctaacaattgttcaggtgttactaaatttaattactaacatttttcttgatttagttacaattttc 30267014  T
Q  99 aagtgttactagatgtca 116  Q
    ||||||||||| ||||||    
T  30267013 aagtgttactaaatgtca 30266996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 44921067 - 44920951
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||  ||||||||||||   | |||||||| ||||||||||  |||||||||||||||| |||||||||||| |||||||||| |||| ||||    
T  44921067 tgtaactaaaactctttagtaacacgagctttacctaacaattgtttaggtgttactaaatttaattagtaacattttt-ttgatttagttacaattttc 44920969  T
Q  99 aagtgttactagatgtca 116  Q
    ||||||||||| ||||||    
T  44920968 aagtgttactaaatgtca 44920951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 41573489 - 41573414
Alignment:
Q  15 tttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagt 89  Q
    ||||||||||  || |||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  41573489 tttagtaacacggggtttacctaacaattgtttaactgttactaaatttaattagtaacatttttcttgatttagt 41573414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 31342706 - 31342816
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||   |||||||||||  || |||| ||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||| |||| ||||    
T  31342706 tgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttc 31342805  T
Q  99 aagtgttacta 109  Q
    |||||||||||    
T  31342806 aagtgttacta 31342816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 40016664 - 40016591
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttacta 109  Q
    |||||| || ||||||||||||||||||||||||||||||| ||||||||| ||| || |||||||||||||||    
T  40016664 acaattattcaaatgttactaaatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 40016591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 27151258 - 27151341
Alignment:
Q  36 tacaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaatttcaagtgttactagatgtcaatt 119  Q
    |||||||||  || ||| ||||| |||||| ||| ||||||||||||||||||||||||||| || | ||||||||||||||||    
T  27151258 tacaattgtacaagtgtcactaattttaattagtgacatttttcttgatttagtaacaatttaaattattactagatgtcaatt 27151341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 127
Target Start/End: Complemental strand, 7718258 - 7718167
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtcaattgttgtagt 127  Q
    ||||||||| |  |||||||||||||||| ||||| ||||||||||||||||| |||| |||||||| |||||| |||| | ||||| ||||    
T  7718258 acaattgttcatgtgttactaaatttaattagtaatatttttcttgatttagttacaattttcaagtattactaaatgtgatttgttctagt 7718167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 11017530 - 11017447
Alignment:
Q  37 acaattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaac-aatttcaagtgttactagatgtcaatt 119  Q
    ||||||| | ||||||||||||||||||| ||||||| ||||||| ||||||||||   |||||| ||||||||||| ||||||    
T  11017530 acaattggtcaaatgttactaaatttaattagtaacaattttctttatttagtaacggttttcaattgttactagatctcaatt 11017447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 22966635 - 22966513
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacattt--ttcttgatttagtaaca-att 96  Q
    ||||||||||| ||||||||||||  || |||||||| ||||||||||||||| ||||||||| || ||||| ||||  || || ||||||||| |  ||    
T  22966635 tgtaactaaaggtctttagtaacaggggctttacctaacaattgtttaaatgtaactaaatttcattagtaatattttattttttatttagtaatagttt 22966536  T
Q  97 tcaagtgttactagatgtcaatt 119  Q
    ||||||||||||| || ||||||    
T  22966535 tcaagtgttactaaatctcaatt 22966513  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 15513777 - 15513680
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaattt 97  Q
    ||||||||||  | ||||||||||   | |||||||| |||||||| || |||||| ||||||||  ||||||||||||||||||||| | |||||||    
T  15513777 tgtaactaaatctttttagtaacacgagctttacctaacaattgttcaagtgttacaaaatttaactagtaacatttttcttgatttacttacaattt 15513680  T

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Target: scaffold0576 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 6795 - 6699
Alignment:
Q  15 tttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttacta 109  Q
    ||||||||||  || |||||||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||||    
T  6795 tttagtaacaccggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaatttttaagtgttacta 6699  T

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Target: scaffold0684 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 737 - 854
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaa-tttc 98  Q
    ||||||||||  ||||||||||||| |  |||| ||| ||||||||  | |||| | ||||||||| ||||||| ||||||||||||||| |||| ||||    
T  737 tgtaactaaaactctttagtaacatggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattttcttgatttagttacaattttc 836  T
Q  99 aagtgttactagatgtca 116  Q
    ||||||| ||| ||||||    
T  837 aagtgttgctaaatgtca 854  T

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Target: scaffold0069 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 40688 - 40785
Alignment:
Q  1 tgtaactaaagttctttagtaacataggatttaccta-caattgtttaaatgttactaaatttaatcagtaacatttttcttgatttagtaacaattt 97  Q
    ||||||||||  ||||||||||||| |  |||| ||| ||||||||  | |||| | ||||||||| ||||||| ||||||||||||||| |||||||    
T  40688 tgtaactaaaactctttagtaacatggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattttcttgatttagttacaattt 40785  T

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