View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2673_low_18 (Length: 427)
Name: NF2673_low_18
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2673_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 52 - 423
Target Start/End: Complemental strand, 32636723 - 32636352
Alignment:
| Q |
52 |
ttgtcttgaaatcaagattaagaacattacatataattgagaacatctttaagaacaaaaaccataaccaatgatatgagatacaagaggtatgttggga |
151 |
Q |
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| T |
32636723 |
ttgtcttgatatcgaaattaagaacattacatataattgagaacatctttaagaacaaaaaccataaccaatgatatcagatacaagaggtatgttggga |
32636624 |
T |
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| Q |
152 |
aggatgtccacagaggaaaagtggaacgaaaactagtagtgagacccatcacaatacaaacaattgccaccaccaatacatcagctgaaaattcccaagt |
251 |
Q |
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| T |
32636623 |
aggatgtccacagaggaaaagtggaacgaaaactagtagtgagacccatcacaatacaaacaattgccaccaccaatacatcagctgaaaattcccaagt |
32636524 |
T |
|
| Q |
252 |
gatatctctcatatatataaggatagatatcactacaaaaccaagaatgttgttcataaacactgctccatagatctgcattcacccaaatctttacata |
351 |
Q |
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| T |
32636523 |
gatatctctcatatatataaggatagatatcactacaaaaccaagaatgttgttcataaacactgctccatagatctgcattgacccaaatctttacata |
32636424 |
T |
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| Q |
352 |
agtatttattcatggactaaatgtttaataactatagaaaccttcaaattatttgaggatttataaataagt |
423 |
Q |
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| T |
32636423 |
agtatttattcatagactaaatgtttaataactatagaaaccttcaaattatttgaggatttataaataagt |
32636352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 56 - 379
Target Start/End: Complemental strand, 32618588 - 32618266
Alignment:
| Q |
56 |
cttgaaatcaagattaagaacattacatataattgagaacatctttaagaacaaaaaccataaccaatgatatgagatacaagaggtatgttgggaagga |
155 |
Q |
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| T |
32618588 |
cttgatatcaaaattaagaacactacacataattgagaacatctttgagaacataaaccataactaatgatattagatacaagaggtatgttgggaagga |
32618489 |
T |
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| Q |
156 |
tgtccacagaggaaaagtggaacgaaaactagtagtgagacccatcacaatacaaacaattgccaccaccaatacatcagctgaaaattcccaagtgata |
255 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32618488 |
tgtccacagaggaaaagtggaacgaaaactagtggtgagacccatcacaacacaaacaattgccaccactaatacatcagctgaaaattcccaagtgata |
32618389 |
T |
|
| Q |
256 |
tctctcatatatataaggatagatatcactacaaaaccaagaatgttgttcataaacactgctccatagatctgcattcacccaaatctttacataagta |
355 |
Q |
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|| |||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||||||| |||||||||||| |||||||| |
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| T |
32618388 |
tccctcatatatataagaatagatatcaccacaaatccaagaatgttgttcatgaacactgcaccataaatctgcattgacccaaatcttt-cataagta |
32618290 |
T |
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| Q |
356 |
tttattcatggactaaatgtttaa |
379 |
Q |
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||||||||| |||||||||||||| |
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| T |
32618289 |
tttattcatagactaaatgtttaa |
32618266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 32636822 - 32636740
Alignment:
| Q |
15 |
tatccaacaaaccacatctagggtttttt-attccattttgtcttgaaatcaagattaagaacattacatataattgagaaca |
96 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| |||| ||||||||||||| |
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| T |
32636822 |
tatccaataaaccacatctagggtttttttattccattttgtcttgaaatcaaaattaaggacactacacataattgagaaca |
32636740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 32618676 - 32618601
Alignment:
| Q |
38 |
ttttttattccattttgtcttgaaatcaagattaagaacattacatataattgagaacatctttaagaacaaaaac |
113 |
Q |
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||||||||| || ||||||||| ||||| |||||| ||| |||| |||||||||||||||||| ||||||||||| |
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| T |
32618676 |
ttttttatttcaccttgtcttgatatcaaaattaaggacactacacataattgagaacatctttgagaacaaaaac |
32618601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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