View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2673_low_20 (Length: 399)
Name: NF2673_low_20
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2673_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 382
Target Start/End: Original strand, 31139924 - 31140307
Alignment:
| Q |
9 |
caacaaaatccattatactctctctttgtccaaattcattggacaattgcaaagagaaacagagagaacttcacatgggtctctgtttttcctttctgcg |
108 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31139924 |
caacaaaacccattatactctctctttgtccaaattcattggacaattgcaaagagaaacagagagaacttcacatgggtctctgtttttcctttctgcg |
31140023 |
T |
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| Q |
109 |
cccctcctctgcaccccctcaatcttcttccttcaacagacctctttcttcaggcaattcttcaacttttccactttctcaatcacccatcttcacaaat |
208 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31140024 |
ccccacctctgcaccacctcaatcttcttccttcaacagacctctttcttcaggcaagtcttcaacttttccactttctcaatcacccatcttcacaaat |
31140123 |
T |
|
| Q |
209 |
tttcatttccagttcaaatcacaacatggg-cattccattttctcaaaaatttccatcaaaagtttttcataataacac---------tttcctctgttt |
298 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31140124 |
tttcatttccagttcaaatcacaacatgggccattccattttctcaaaaatttccatcaaaagtttttcataataacactttcctctgtttcctctgttt |
31140223 |
T |
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| Q |
299 |
tcaggttcaacaagcactgttggattctcagcaactacaagcagtgctggaagaagccaattctctgaggtagcaagtggaagc |
382 |
Q |
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| T |
31140224 |
tcaggttcaacaagcactgttggattctcagcaactacaagcagtgctggaagaagccaattctctgaggtagcaagtggaagc |
31140307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 353
Target Start/End: Complemental strand, 31199054 - 31198700
Alignment:
| Q |
9 |
caacaaaatccattatactctctctttgtccaaattcattggacaattgcaaagagaaacagagagaacttcacatgggtctctgtttttcctttctgcg |
108 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31199054 |
caacaaaacccattatactctctctttgtccaaattcattggacaattgcaaagagaaacagagagaacttcacatgggtctctgtttttcctttctgcg |
31198955 |
T |
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| Q |
109 |
cccctcctctgcaccccctcaatcttcttccttcaacagacctctttcttcaggcaattcttcaacttttccactttctcaatcacccatcttcacaaat |
208 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31198954 |
ccccacctctgcacctcctcaatcttcttccttcaacagacctctttcttcaggcaattcttcaacttttccactttctcaatcacccatcttcacaaat |
31198855 |
T |
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| Q |
209 |
tttcatttccagttcaaatcacaacatggg-cattccattttctcaaaaatttccatcaaaagtttttcataataacac---------tttcctctgttt |
298 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31198854 |
tttcatttccagttcaaatcacaacatgggccattccattttctcaaaaatttccatcaaaagtttttcataataacactttcctctgtttcctctgttt |
31198755 |
T |
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| Q |
299 |
tcaggttcaacaagcactgttggattctcagcaactacaagcagtgctggaagaa |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31198754 |
tcaggttcaacaagcactgttggattctcagcaactacaagcagtgctggaagaa |
31198700 |
T |
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Back To:
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