View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2673_low_36 (Length: 249)
Name: NF2673_low_36
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2673_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 34608346 - 34608111
Alignment:
| Q |
1 |
tacatctgggagcacaagtcaattacaacttgttaattccgctacacagtgttggcaaaaactattctaactgaactatgctattctgtttgagttagag |
100 |
Q |
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| T |
34608346 |
tacatctgggatcacaagtcaattacaacttgttaattcagctacacagtgttggcaaaaactattctaactgaactatgttattctgtttgagttagag |
34608247 |
T |
|
| Q |
101 |
gcttgtttcagaggtataaataagtctcataggaaatctctatgaggaggggctaaggagacaaatttggaatcacattgcactttaagttagaattcca |
200 |
Q |
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| T |
34608246 |
gcttgtttcagaggtataaataagtctcataggaaatctctatgaggaggggctaaggagacaaatttggaatcacgttgcactttaagttagaaatcca |
34608147 |
T |
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| Q |
201 |
tgtaactctatgatttgtggtgttatcttttttctt |
236 |
Q |
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| T |
34608146 |
tgtaactctatgatttgtggtgtttttttttttctt |
34608111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 50 - 206
Target Start/End: Complemental strand, 34594111 - 34593951
Alignment:
| Q |
50 |
tgttggcaaaaactattctaactgaactatgct---attctgtttgagttagaggcttgtttcagaggtataaataagtctcataggaaatctctatgag |
146 |
Q |
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|||||||||||| |||||||||||||||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||||| || |||||||| || |
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| T |
34594111 |
tgttggcaaaaaatattctaactgaactatgttgttattctgtttcagttagaggcttgtttcggaggtataaataagtctcatatgatatctctataag |
34594012 |
T |
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| Q |
147 |
gaggggctaaggagacaaatttggaatcacattgcact-ttaagttagaattccatgtaac |
206 |
Q |
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|| |||||||||||| |||||||||||||||||||| | | ||||||||| |||||||||| |
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| T |
34594011 |
gaagggctaaggagaaaaatttggaatcacattgcagtgtgaagttagaaatccatgtaac |
34593951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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