View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2673_low_38 (Length: 241)
Name: NF2673_low_38
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2673_low_38 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 30428914 - 30429100
Alignment:
| Q |
18 |
agtcgtatgtaaacatatcagttaatgaatttatgtttacattatttttgtgctcgaataattcactacaagaaacaaacactaataataattgatttta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30428914 |
agtcgtatgtaaacatatcagttaatgaatttatgtttacattatttttgtgctcaaat---tcactacaagaaacaaacactaataataattgatttta |
30429010 |
T |
|
| Q |
118 |
tttataaagctaaccatcctcatgagaggctttgtttttaagagaaagatctgattgatcgtttacaacatcattttatacaataattcc |
207 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30429011 |
tttataaagctaaccatcctcacgagaggctttgtttttaagagaaagatctgattgattgtttacaacatcattttatacaataattcc |
30429100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 30439797 - 30439910
Alignment:
| Q |
19 |
gtcgtatgtaaacatatcagttaatgaa-tttatgtttacattatttttgtgctcgaataattcac--tacaagaaacaaacactaataataattgattt |
115 |
Q |
| |
|
|||||||| |||||||| ||||||||| ||||||||||||||||||||| | || ||||||| ||||||||||||||||||| |||||||| | |
|
|
| T |
30439797 |
gtcgtatgaaaacatatatgttaatgaaatttatgtttacattatttttgcgttc---aaattcacattacaagaaacaaacactaacaataattggtcg |
30439893 |
T |
|
| Q |
116 |
tatttataaagctaacc |
132 |
Q |
| |
|
||| ||| ||||||||| |
|
|
| T |
30439894 |
tatgtatgaagctaacc |
30439910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University