View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2673_low_39 (Length: 239)

Name: NF2673_low_39
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2673_low_39
NF2673_low_39
[»] chr6 (2 HSPs)
chr6 (13-239)||(4183252-4183478)
chr6 (13-239)||(4744096-4744319)
[»] chr1 (9 HSPs)
chr1 (141-239)||(51858189-51858287)
chr1 (132-239)||(51829325-51829429)
chr1 (65-97)||(51221501-51221533)
chr1 (41-97)||(51757023-51757079)
chr1 (65-97)||(51858325-51858357)
chr1 (139-239)||(51763296-51763393)
chr1 (129-182)||(51757105-51757158)
chr1 (65-102)||(51763230-51763266)
chr1 (65-102)||(51854663-51854700)
[»] chr3 (1 HSPs)
chr3 (65-105)||(43997276-43997316)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 4183252 - 4183478
Alignment:
Q  13 aatattcccggtccttgaatgaggtgacgatttgggaaatcatgaatccctttccaataatcggtacccaaagtatgaacattaatttctctgnnnnnnn 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  4183252 aatattcccggtccttgaatgaggtgacgatttgggaaatcatgaatccctttccaataatcggtacccaaagtatgaacattaatttctctgttttttt 4183351  T
Q  113 gataataatcgcgtacagaaagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4183352 gataataatcgcgtacagaaagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatt 4183451  T
Q  213 tatcaaaggaggcaatatcttgaattt 239  Q
    |||||||||||||||||||||||||||    
T  4183452 tatcaaaggaggcaatatcttgaattt 4183478  T

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Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 4744096 - 4744319
Alignment:
Q  13 aatattcccggtccttgaatgaggtgacgatttgggaaatcatgaatccctttccaataatcggtacccaaagtatgaacattaatttctctgnnnnnnn 112  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  4744096 aatattccaggtccttgaatgaggtgatgatttgggaaatcatgaatccctttccaataatcggtacccaaagtatgaacattaatttctctgttttttt 4744195  T
Q  113 gataataatcgcgtacagaaagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatt 212  Q
    |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4744196 gataa---tcgcgtacagaaagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatt 4744292  T
Q  213 tatcaaaggaggcaatatcttgaattt 239  Q
    |||||||||||||||||||||||||||    
T  4744293 tatcaaaggaggcaatatcttgaattt 4744319  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 51858287 - 51858189
Alignment:
Q  141 aatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatttatcaaaggaggcaatatcttgaattt 239  Q
    ||||||||| |||  ||||||||||||||| |||||||| ||||||| ||||||||| ||||||  ||||||||| |||||||||||||||||||||||    
T  51858287 aatcttatagttattagtgaaacgatcataaactaaggtgaatgaggattgtaaataattttggtctggatttattaaaggaggcaatatcttgaattt 51858189  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 51829429 - 51829325
Alignment:
Q  132 aagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatttatcaaaggaggcaatatc 231  Q
    |||||| |||||||||||||||  ||||||||||||||| ||||||||||   ||||| ||| ||| ||||    |||| || |||||||||||||||||    
T  51829429 aagagcaataatcttataattatgagtgaaacgatcatacactaaggtaa---aggttggtatataatttttctctggagttgtcaaaggaggcaatatc 51829333  T
Q  232 ttgaattt 239  Q
    || |||||    
T  51829332 ttaaattt 51829325  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 51221501 - 51221533
Alignment:
Q  65 tccaataatcggtacccaaagtatgaacattaa 97  Q
    |||||||||||||||||||||||||||||||||    
T  51221501 tccaataatcggtacccaaagtatgaacattaa 51221533  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 51757023 - 51757079
Alignment:
Q  41 gatttgggaaatcatgaatccctttccaataatcggtacccaaagtatgaacattaa 97  Q
    |||||||||| || || |||| | |||||||||||||||||||||||||||| ||||    
T  51757023 gatttgggaagtcctggatccttctccaataatcggtacccaaagtatgaacgttaa 51757079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 51858357 - 51858325
Alignment:
Q  65 tccaataatcggtacccaaagtatgaacattaa 97  Q
    |||||||||||||||||||||||||||||||||    
T  51858357 tccaataatcggtacccaaagtatgaacattaa 51858325  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 51763296 - 51763393
Alignment:
Q  139 ataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatttatcaaaggaggcaatatcttgaatt 238  Q
    ||||| |||||||||  ||||||| ||| |||||||| ||| ||  ||||||| ||||| ||||||  ||||||||| |   ||||||||||||||||||    
T  51763296 ataatgttataattattagtgaaaagatgatagactagggtgaacaaggtttgaaaataattttgggctggatttatga---gaggcaatatcttgaatt 51763392  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 51757105 - 51757158
Alignment:
Q  129 agaaagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaa 182  Q
    ||||| ||| |||||||| ||||||  |||||||||||| ||||||||||||||    
T  51757105 agaaatagcaataatcttgtaattattagtgaaacgatcgtagactaaggtaaa 51757158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 51763230 - 51763266
Alignment:
Q  65 tccaataatcggtacccaaagtatgaacattaatttct 102  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  51763230 tccaataatcggtacccaaagta-gaacattaatttct 51763266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 51854700 - 51854663
Alignment:
Q  65 tccaataatcggtacccaaagtatgaacattaatttct 102  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  51854700 tccaataatcggtacccaaagtatgagcattaacttct 51854663  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 43997316 - 43997276
Alignment:
Q  65 tccaataatcggtacccaaagtatgaacattaatttctctg 105  Q
    |||||||||  |||||||||||||||||||||| |||||||    
T  43997316 tccaataattagtacccaaagtatgaacattaacttctctg 43997276  T

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