View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2673_low_4 (Length: 673)

Name: NF2673_low_4
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2673_low_4
NF2673_low_4
[»] chr3 (1 HSPs)
chr3 (16-657)||(46581808-46582450)


Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 16 - 657
Target Start/End: Original strand, 46581808 - 46582450
Alignment:
Q  16 atagtatgacagtgattctattctggtgaagtaaatatgtgagaaattnnnnnnnnnntatcaaagaatacaaaattcttaaaccctttctctttctaaa 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||    
T  46581808 atagtatgacagtgattctattctagtgaagtaaatatgtgagaaattaaaaaaaaaa-atcaaagaatacaaaattcttaaaccctttctctttctaaa 46581906  T
Q  116 gaaataagcaaagcagatatttctttatatctgctatataatataagtcgtcctttacaaagagaatttcagaatgagaatgtctcataacaacatctca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46581907 gaaataagcaaagcagatatttctttatatctgctatataatataagtcatcctttacaacgagaatttcagaatgagaatgtctcataacaacatctca 46582006  T
Q  216 ccaagcatccaaataataataacatgcattcttctacactctcctacaatcttcattacaagtaattaaagtggtgccagtagtaattctgtttaactcc 315  Q
     |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46582007 tcaagcatccaaataataataacatgcattcttttacactctcctacaatcttcattacaagtaattaaagtggtgccagtagtaattctgtttaactcc 46582106  T
Q  316 gcatcgcttattctccaactacttccttacattcaatctaacctaccaatccaaacaaccaactactaagaacttgttctagtttctgtaaaaggaaaca 415  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46582107 gcattgcttattatccaactacttccttacattcaatctaacctaccaatccaaacaaccaactactaagaacttgttctagtttctgtaaaaggaaaca 46582206  T
Q  416 caat-taat-gtcatcatcttcatcgtcgtcaatgccagtgtatcaacaacagcctcctccatttacagtgacacaaccatcctaccatggtgcatcaca 513  Q
    |||| | ||  || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46582207 caatgtcatcatcttcatcttcatcgtcgtcaatgccagtgtatcaacaacagcctcctccgtttacagtgacacaaccatcctaccatggtgcatcaca 46582306  T
Q  514 acatgactccattggtcctctcattggagttctcgtagtgataattgtgttgggtataattgcagtaatgattggaaggctatgctcaggaagaagaatc 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46582307 acatgactccattggtcctctcattggagttctcgtagtgataattgtgttgggtataattgcagtaatgattggaaggctatgctcaggaagaagaatc 46582406  T
Q  614 atgggtcatggccaatatgatatagaaagctgggcagagaaaaa 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46582407 atgggtcatggccaatatgatatagaaagctgggcagagaaaaa 46582450  T

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