View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2673_low_40 (Length: 230)

Name: NF2673_low_40
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2673_low_40
NF2673_low_40
[»] chr8 (9 HSPs)
chr8 (15-230)||(30429304-30429517)
chr8 (66-230)||(30431066-30431230)
chr8 (66-226)||(30447222-30447381)
chr8 (69-230)||(30419204-30419364)
chr8 (125-226)||(30430122-30430221)
chr8 (96-174)||(30431622-30431698)
chr8 (181-228)||(30440192-30440238)
chr8 (108-229)||(30414679-30414798)
chr8 (99-164)||(30439636-30439701)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 30429304 - 30429517
Alignment:
Q  15 gacaaacccttcattaaataagtgagaaaatgatattttgaagnnnnnnnntggtaaaaataataattttatcaattttgatcttaagtcgacctttaca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||| ||| |||||||| | ||||||||||    
T  30429304 gacaaacccttcattaaataagtgagaaaatgatattttgaa-aaaaaaaatggtaaaaataataattttatcagtttggatcttaaatggacctttaca 30429402  T
Q  115 aagactaataatctaagatgattgagatttaattaagatattgatccatcccaacatttgaatttttatatgcataagccacaatcaaatcttttaacta 214  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||    
T  30429403 aagactaataatctaagatgattgagatctaattaagatattgatccatcccaacatttgaatttttatatgcataaaccacaatcaaatc-tttagcta 30429501  T
Q  215 aatggttaaagaacca 230  Q
    ||||||||||||||||    
T  30429502 aatggttaaagaacca 30429517  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 230
Target Start/End: Original strand, 30431066 - 30431230
Alignment:
Q  66 tggtaaaaataataattttatcaattttgatcttaagtcgacctttac-aaagactaataatctaagatgattgagatttaattaagatattgatccatc 164  Q
    |||||||||||||| ||||||||| ||||| ||||||| ||| ||||| ||||| |||| |||| |||||||||| || || |||| | |||||||||||    
T  30431066 tggtaaaaataatagttttatcaactttgagcttaagttgacatttacaaaagattaatcatcttagatgattgacatatatttaatagattgatccatc 30431165  T
Q  165 ccaacatttgaatttttatatgcataagccacaatcaaatcttttaactaaatggttaaagaacca 230  Q
    |  ||||||| |||| |||| |||||| || |||| ||||| ||||||||||||||||||||||||    
T  30431166 cttacatttgtatttgtataagcataaacctcaataaaatc-tttaactaaatggttaaagaacca 30431230  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 226
Target Start/End: Original strand, 30447222 - 30447381
Alignment:
Q  66 tggtaaaaataataattttatcaattttgatcttaagtcgaccttt-acaaagactaataatctaagatgattgagatttaattaagatattgatccatc 164  Q
    |||||||||||||| |||||| |  || | | |||||||||||||| ||| |||||||| |||| ||||||||||||  || |||||| |||||| |||     
T  30447222 tggtaaaaataatagttttattagcttgggttttaagtcgaccttttacatagactaatcatctgagatgattgagacctatttaagagattgatgcat- 30447320  T
Q  165 ccaacatttgaatttttatatgcataagccacaatcaaatcttttaactaaatggttaaaga 226  Q
    |||| ||||  |||| ||||||||||| ||||||||||||| |||||| |||||||| ||||    
T  30447321 ccaaaatttatatttctatatgcataaaccacaatcaaatc-tttaacaaaatggttcaaga 30447381  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 230
Target Start/End: Original strand, 30419204 - 30419364
Alignment:
Q  69 taaaaataataattttatcaattttgatcttaagtcgacctttacaaagactaataatctaagatgattgagatttaattaagatattgatccatcccaa 168  Q
    ||||||||||| ||||||||| || |   |||||| | | |||||||||| |||| ||| ||||||||||| || || |||| | ||||||||||||| |    
T  30419204 taaaaataatagttttatcaacttggggattaagttggcatttacaaagattaatcatccaagatgattgacatatatttaatagattgatccatcccta 30419303  T
Q  169 catttgaatttttatatgcataagccacaatcaaatcttttaactaaatggttaaagaacca 230  Q
    ||||||  ||| |||| ||||||  | |||| ||||  ||||||||||||||||||||||||    
T  30419304 catttgtgtttgtataagcataaaactcaat-aaataatttaactaaatggttaaagaacca 30419364  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 30430122 - 30430221
Alignment:
Q  125 atctaagatgattgagatttaattaagatattgatccatcccaacatttgaatttttatatgcataagccacaatcaaatcttttaactaaatggttaaa 224  Q
    |||| ||||||||||||| || ||||||||||| | |||||||| ||||| |||| ||||||||||| | ||||||||||| |||||| |||| ||||||    
T  30430122 atctgagatgattgagatctatttaagatattggtgcatcccaa-atttgcatttctatatgcataaacaacaatcaaatc-tttaacaaaattgttaaa 30430219  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 30431622 - 30431698
Alignment:
Q  96 tcttaagtcgacctttacaaagactaataatctaagatgattgagatttaattaagatattgatccatcccaacatttg 174  Q
    |||||||||||||||||||||||||||| || | ||||||||||||| |  |||||| ||  |||||||||||| ||||    
T  30431622 tcttaagtcgacctttacaaagactaatcatgtgagatgattgagatcttcttaagagat--atccatcccaacgtttg 30431698  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 30440192 - 30440238
Alignment:
Q  181 tatatgcataagccacaatcaaatcttttaactaaatggttaaagaac 228  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  30440192 tatatgcataaaccacaatcaaatc-tttaactaaatggttaaagaac 30440238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 30414679 - 30414798
Alignment:
Q  108 ctttacaaagactaataatctaagatgattgagatttaattaagatattgatccatcccaacatttgaatttttatatgcataagccacaatcaaatctt 207  Q
    |||||||||||||| | ||| | ||||| ||||||||| |||||| |||||||||||  || ||     ||| || |||||||  ||||||||||||| |    
T  30414679 ctttacaaagactattcatcaaggatgactgagatttatttaagagattgatccatcgtaatatagttttttctacatgcatataccacaatcaaatc-t 30414777  T
Q  208 ttaactaaatggttaaagaacc 229  Q
    |||||||||| |||||||||||    
T  30414778 ttaactaaat-gttaaagaacc 30414798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 30439636 - 30439701
Alignment:
Q  99 taagtcgacctttacaaagactaataatctaagatgattgagatttaattaagatattgatccatc 164  Q
    |||||| |||||||||||||||||| |||  ||||||||||||| || || ||| ||| |||||||    
T  30439636 taagtcaacctttacaaagactaatcatcatagatgattgagatctattttagagattaatccatc 30439701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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