View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2673_low_41 (Length: 227)

Name: NF2673_low_41
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2673_low_41
NF2673_low_41
[»] chr8 (2 HSPs)
chr8 (5-227)||(43744490-43744712)
chr8 (9-170)||(12528182-12528343)
[»] chr5 (1 HSPs)
chr5 (9-227)||(28219596-28219814)
[»] chr7 (24 HSPs)
chr7 (9-227)||(3146942-3147160)
chr7 (76-227)||(8646622-8646773)
chr7 (77-226)||(8673894-8674043)
chr7 (8-227)||(8616358-8616577)
chr7 (9-227)||(6789190-6789408)
chr7 (9-227)||(27831147-27831365)
chr7 (77-226)||(8664081-8664228)
chr7 (9-227)||(17259919-17260137)
chr7 (66-227)||(17267674-17267835)
chr7 (9-143)||(8636699-8636833)
chr7 (57-166)||(7878066-7878175)
chr7 (9-218)||(8576004-8576213)
chr7 (9-163)||(8545311-8545465)
chr7 (155-227)||(8659187-8659259)
chr7 (8-218)||(8585987-8586197)
chr7 (82-227)||(1301211-1301356)
chr7 (67-152)||(8102403-8102488)
chr7 (9-218)||(8569989-8570198)
chr7 (82-227)||(8654201-8654346)
chr7 (9-109)||(29582231-29582331)
chr7 (9-124)||(8581378-8581493)
chr7 (57-151)||(8590364-8590458)
chr7 (67-171)||(8383204-8383308)
chr7 (67-152)||(8017760-8017845)
[»] chr2 (10 HSPs)
chr2 (58-227)||(43625139-43625308)
chr2 (19-218)||(14703096-14703295)
chr2 (9-171)||(12245734-12245896)
chr2 (16-171)||(11999093-11999247)
chr2 (9-227)||(16662264-16662482)
chr2 (9-218)||(12234368-12234576)
chr2 (82-224)||(16657792-16657934)
chr2 (9-218)||(7541904-7542113)
chr2 (16-225)||(12258855-12259064)
chr2 (117-168)||(39373366-39373417)
[»] chr4 (6 HSPs)
chr4 (9-227)||(30774930-30775148)
chr4 (16-167)||(35132141-35132293)
chr4 (58-124)||(9336266-9336332)
chr4 (67-125)||(23588107-23588165)
chr4 (9-124)||(23596960-23597075)
chr4 (64-125)||(54396156-54396217)
[»] chr1 (4 HSPs)
chr1 (9-227)||(4678829-4679047)
chr1 (9-227)||(15594712-15594930)
chr1 (58-227)||(34467057-34467229)
chr1 (158-218)||(52549293-52549353)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 43744490 - 43744712
Alignment:
Q  5 caatagcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagcc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43744490 caatagcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagcc 43744589  T
Q  105 accaacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43744590 accaacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattg 43744689  T
Q  205 atttcctcaaacttagcacgagt 227  Q
    |||||||||||||||| ||||||    
T  43744690 atttcctcaaacttagtacgagt 43744712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 12528182 - 12528343
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacca 108  Q
    |||||| |||||||||||||| ||| ||||  | || ||||| ||    ||||| ||||||||||| || |  ||||| ||||||||||| |||||||||    
T  12528182 agcaacagcctcatcagggttgatgctcttgtataactccttgcccttgaaaaactcctgcaatagctgcttcactttgggaatcctagacgagccacca 12528281  T
Q  109 acaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaac 170  Q
    ||||| |||| ||||| || |   |||||||||||||| ||||| || | |||||| |||||    
T  12528282 acaagtacaatatcatctacactactcttgtccatcttagcatcggtcaaacaactttcaac 12528343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 28219596 - 28219814
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacca 108  Q
    |||||| |||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| |||    
T  28219596 agcaacagcctcatcagggttaatgctcttacacaattccttccctccaaaaaattcctgcagtagttgttgtacttttggaattctagaggagcctcca 28219695  T
Q  109 acaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgattt 208  Q
    |||||||||||||| |||| ||| ||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  28219696 acaagaacaacatcgtgtacagccctcttgtccatattggcatcagtgagacacctctcaacagttttcaaacactcattgaaaagatccatattgattt 28219795  T
Q  209 cctcaaacttagcacgagt 227  Q
    |||||||||||||||||||    
T  28219796 cctcaaacttagcacgagt 28219814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 3146942 - 3147160
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacca 108  Q
    |||||| |||||||||||||| ||| | ||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||     
T  3146942 agcaacggcctcatcagggttgatgctgttacacagatgcttccctgcaaaaaattcctgcaatagttgttgcacttttggaattctagacgagccaccg 3147041  T
Q  109 acaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgattt 208  Q
    ||||| || |||||||||||||| || |||||||| | | ||||||  | |||||||| |||| ||| |||||||||  |||| ||||||||||||||||    
T  3147042 acaaggacgacatcatgtatagcacttttgtccatttcgacatcagcgaaacaactcttaacagtttccaaacactcagtgaaaagatccatattgattt 3147141  T
Q  209 cctcaaacttagcacgagt 227  Q
    |||||||||| ||||||||    
T  3147142 cctcaaacttggcacgagt 3147160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 8646622 - 8646773
Alignment:
Q  76 tgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattt 175  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||| || |||||||||||||| |||    
T  8646622 tgttgtacttttggaattctagaggagccaccaacaagaacaacatcatggatagaactcttgtccatcttggcatcattatgacaactctcaacagttt 8646721  T
Q  176 tcaaacactcgttgaagagatccatattgatttcctcaaacttagcacgagt 227  Q
     |||||| ||| |||| ||||||||||||||| | ||||| || ||||||||    
T  8646722 ccaaacattcgatgaacagatccatattgattgcgtcaaatttggcacgagt 8646773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 8674043 - 8673894
Alignment:
Q  77 gttgtacttttggaatcctagaggagccaccaacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaatttt 176  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| ||| |||   ||  ||||||||||||||||| |||||||| |||||||| |||     
T  8674043 gttgtacttttggaattctagaggagccaccaacaaggacaacataatggataaaacttatgtccatcttggcatcaataagacaattctcaacagtttc 8673944  T
Q  177 caaacactcgttgaagagatccatattgatttcctcaaacttagcacgag 226  Q
    ||||||||||||||| ||||  |||||||||||||||||||| |||||||    
T  8673943 caaacactcgttgaaaagattgatattgatttcctcaaacttggcacgag 8673894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 8616358 - 8616577
Alignment:
Q  8 tagcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacc 107  Q
    ||||||| ||||||||||| || |||||||| ||||||||||||||  | ||||| ||   ||||||||  || ||||| ||||||||||| ||||||||    
T  8616358 tagcaacagcctcatcaggattgatgttcttgcacaaatccttcccatcgaaaaagtcactcaatagttcctgcactttaggaatcctagacgagccacc 8616457  T
Q  108 aacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgatt 207  Q
     |||||||||| ||||| || |   ||||| || ||||| | |||| ||| ||||||||||||| | || | ||||||||| || || ||||||||||||    
T  8616458 gacaagaacaatatcatctacactactcttctctatcttagaatcattaaaacaactctcaacagtctttatacactcgttaaaaaggtccatattgatt 8616557  T
Q  208 tcctcaaacttagcacgagt 227  Q
    |||||||||||| |||||||    
T  8616558 tcctcaaacttaacacgagt 8616577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 6789190 - 6789408
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacca 108  Q
    |||||| |||||||||||||| ||| || | ||||||||||| ||    |||| ||| |||||||||||||| ||||| ||||| ||||| || ||||||    
T  6789190 agcaacagcctcatcagggttgatgctcatgcacaaatcctttcccatgaaaacttcttgcaatagttgttgcactttgggaattctagaagacccacca 6789289  T
Q  109 acaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgattt 208  Q
    ||||| |||||||||| || |   |||||||||||||| || |||  |||||||||||||||  | |||| |||||| || || | ||||||||||||||    
T  6789290 acaaggacaacatcatttacaatactcttgtccatcttagcgtcaacaagacaactctcaacggtcttcatacactcattaaaaatatccatattgattt 6789389  T
Q  209 cctcaaacttagcacgagt 227  Q
    |||||||||| || |||||    
T  6789390 cctcaaacttggcccgagt 6789408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 27831365 - 27831147
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacca 108  Q
    |||||| ||||||||||| || ||| |||| ||||||||||| ||    ||||| |||  |||||| || || ||||| |||||||| || |||||||||    
T  27831365 agcaacagcctcatcaggattgatgctcttgcacaaatcctttcccttgaaaaagtccgccaatagctgctgcactttgggaatccttgaagagccacca 27831266  T
Q  109 acaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgattt 208  Q
    ||||| |||||||||| ||||   |||||||||||||| |  ||||| ||||||||||||||| | | || ||| || ||||| || |||||||||||||    
T  27831265 acaaggacaacatcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgattt 27831166  T
Q  209 cctcaaacttagcacgagt 227  Q
    |||||||||| ||||||||    
T  27831165 cctcaaactttgcacgagt 27831147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 8664081 - 8664228
Alignment:
Q  77 gttgtacttttggaatcctagaggagccaccaacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaatttt 176  Q
    |||||||||| ||||| |||||||||||||||||||| ||||||| ||| |||   ||| ||||||||| ||||  | ||||||||||||||||| |||     
T  8664081 gttgtactttcggaattctagaggagccaccaacaaggacaacataatggataaaactcatgtccatctcggcagtaataagacaactctcaacagtttc 8664180  T
Q  177 caaacactcgttgaagagatccatattgatttcctcaaacttagcacgag 226  Q
    ||||||  ||||||| ||||||||||||||||| ||| |||| |||||||    
T  8664181 caaaca--cgttgaaaagatccatattgatttcatcatacttggcacgag 8664228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 17259919 - 17260137
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatcctt-ccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacc 107  Q
    |||||| |||||||||||||| ||| |||| || || ||||| ||||  || |||| ||||||||||||| || ||||| ||||||||||| || |||||    
T  17259919 agcaacagcctcatcagggttgatgctcttgcataattccttacccttgaagaaat-cctgcaatagttgctgcactttcggaatcctagaagatccacc 17260017  T
Q  108 aacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgatt 207  Q
    |||||| ||||||||||  ||   ||||||||| |||||  ||||| |||||||  |||||||||| | ||  ||||| |  || || ||||||||||||    
T  17260018 aacaaggacaacatcatcaattctgctcttgtcaatcttaccatcactaagacacttctcaacaatctccatgcactcataaaaaaggtccatattgatt 17260117  T
Q  208 tcctcaaacttagcacgagt 227  Q
    || |||||||| ||||||||    
T  17260118 tcttcaaacttggcacgagt 17260137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 227
Target Start/End: Original strand, 17267674 - 17267835
Alignment:
Q  66 ctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactc 165  Q
    |||||||||||| || ||||| ||||||||||| || ||||||||||| ||||||||||  |    ||||||||| ||||| |||||| |||||||  ||    
T  17267674 ctgcaatagttgctgcactttcggaatcctagaagacccaccaacaaggacaacatcatcaactctgctcttgtcaatcttagcatcactaagacacttc 17267773  T
Q  166 tcaacaattttcaaacactcgttgaagagatccatattgatttcctcaaacttagcacgagt 227  Q
    |||||||| | ||  ||||| |  || || ||||||||||||||||||||||| ||||||||    
T  17267774 tcaacaatctccatgcactcatcaaaaaggtccatattgatttcctcaaacttggcacgagt 17267835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 8636833 - 8636699
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacca 108  Q
    |||||| |||||||||| ||| ||| |||||||||  |||||| |   |||||  ||||| |||||||| || || ||||||||||||||||||||||||    
T  8636833 agcaacagcctcatcagcgttgatgctcttacacagttccttcgccttaaaaatgtcctgtaatagttgctgcacctttggaatcctagaggagccacca 8636734  T
Q  109 acaagaacaacatcatgtatagcgctcttgtccat 143  Q
    ||||| |||||||||| ||||  |||||| |||||    
T  8636733 acaaggacaacatcatctatattgctcttatccat 8636699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 7878175 - 7878066
Alignment:
Q  57 aaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagta 156  Q
    |||||| ||||||||||| || || |||||  |||||||||| || ||||||||||| |||||||||| || |  | ||||||||||| | |||||||||    
T  7878175 aaaaaagtcctgcaatagctgctgcactttgagaatcctagatgatccaccaacaagtacaacatcatctacattgttcttgtccatcatagcatcagta 7878076  T
Q  157 agacaactct 166  Q
    ||||||||||    
T  7878075 agacaactct 7878066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 8576004 - 8576213
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacca 108  Q
    |||||| |||||||||||||| ||| ||||||| || ||||||||    ||||  ||||| ||||| |||   ||||| ||||||||||| || ||||||    
T  8576004 agcaacagcctcatcagggttgatgctcttacataattccttccccttgaaaacctcctgtaatagctgtctcactttaggaatcctagaagaaccacca 8576103  T
Q  109 acaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgattt 208  Q
    ||||| |||||||||| || |    ||||||||||||| ||||||| ||||||| | | |||| | |||| |||||  |  ||||| | |||||| ||||    
T  8576104 acaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattcattt 8576203  T
Q  209 cctcaaactt 218  Q
    ||||||||||    
T  8576204 cctcaaactt 8576213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 8545311 - 8545465
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacca 108  Q
    |||||| |||||||||||||||||| |||| || || ||||||||   |||||| ||||| ||||| |||   ||||| ||||||||||| || || |||    
T  8545311 agcaacagcctcatcagggttaatgctcttgcataattccttccccttaaaaaactcctgtaatagctgtctcactttaggaatcctagaagaaccgcca 8545410  T
Q  109 acaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaac 163  Q
    ||||| |||||||||| || |   | |||||||||||| ||||||  ||||||||    
T  8545411 acaaggacaacatcatctacactacccttgtccatcttagcatcaacaagacaac 8545465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 8659187 - 8659259
Alignment:
Q  155 taagacaactctcaacaattttcaaacactcgttgaagagatccatattgatttcctcaaacttagcacgagt 227  Q
    ||||||||||||||||| |||||| |||||| || || ||||||||||| |||||||||||| | ||||||||    
T  8659187 taagacaactctcaacagttttcatacactcattaaaaagatccatattcatttcctcaaacctggcacgagt 8659259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 8586197 - 8585987
Alignment:
Q  8 tagcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacc 107  Q
    ||||||| ||||||||||| || |||||||| || ||||| |||||    || || ||   ||||||||  |||||||| ||||| || || ||||||||    
T  8586197 tagcaacagcctcatcaggattgatgttcttgcataaatctttcccattgaagaagtcactcaatagttcctgtactttgggaattctggacgagccacc 8586098  T
Q  108 aacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgatt 207  Q
     ||||| |||| ||| | || | |  |||| || ||||| | ||| |||||||||||||||||| | || | |||||| || || || ||||||||||||    
T  8586097 gacaaggacaatatcgtctacaccattcttctctatcttagaatcggtaagacaactctcaacagtatttatacactcattaaaaaggtccatattgatt 8585998  T
Q  208 tcctcaaactt 218  Q
    |||||||||||    
T  8585997 tcctcaaactt 8585987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 1301211 - 1301356
Alignment:
Q  82 acttttggaatcctagaggagccaccaacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaac 181  Q
    ||||| ||||||||||| |||||||| |||||||||| |||||  ||| | ||| ||   || || | |||  ||||||||||||||||  ||||   ||    
T  1301211 actttgggaatcctagacgagccacccacaagaacaatatcatcgatatcactcatgcatatttttgaatcgctaagacaactctcaacggtttttgtac 1301310  T
Q  182 actcgttgaagagatccatattgatttcctcaaacttagcacgagt 227  Q
    |||| || || ||||||||||| |||||||||||||| ||||||||    
T  1301311 actcattaaaaagatccatattaatttcctcaaacttggcacgagt 1301356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 8102403 - 8102488
Alignment:
Q  67 tgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatgtatagcgctcttgtccatcttggcatc 152  Q
    ||||| ||||| || ||||| ||||||||||  || ||||||||||||||||||||||| |  | ||||||||||||||| |||||    
T  8102403 tgcaacagttgctgaactttgggaatcctagttgaaccaccaacaagaacaacatcatgaactgtgctcttgtccatcttagcatc 8102488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 8569989 - 8570198
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacca 108  Q
    |||||| |||||||||||||||||| | || || || ||||||||    ||||| || || ||||| ||    ||||| ||||||||||| || ||||||    
T  8569989 agcaacagcctcatcagggttaatgctgttgcataattccttcccctggaaaaactcttgtaatagctgcctcactttaggaatcctagaagaaccacca 8570088  T
Q  109 acaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgattt 208  Q
    ||||| |||||||||| || |    |||| |||||||| ||||||| ||||||||| | |||| ||| || |||||  |  ||||| | |||||| ||||    
T  8570089 acaaggacaacatcatctacactattcttttccatcttagcatcagcaagacaactattaacagtttccatacacttttcaaagaggttcatattcattt 8570188  T
Q  209 cctcaaactt 218  Q
    ||||||||||    
T  8570189 cctcaaactt 8570198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 8654201 - 8654346
Alignment:
Q  82 acttttggaatcctagaggagccaccaacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaac 181  Q
    ||||| ||||||||||| |||||||| || || ||||||||||  ||| |  ||||||  ||||| | |||  | |||||||| |||||||| || | ||    
T  8654201 actttgggaatcctagacgagccacccacgagtacaacatcatcaatatcattcttgtatatctttgaatctctgagacaactgtcaacaatattgatac 8654300  T
Q  182 actcgttgaagagatccatattgatttcctcaaacttagcacgagt 227  Q
    |||| ||||| |  |||||||| ||||||||||| |||||||||||    
T  8654301 actcattgaaaaagtccatattaatttcctcaaatttagcacgagt 8654346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 29582331 - 29582231
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacca 108  Q
    |||||| |||||||||||||| ||| || | ||||||||||||||    |||||||| |||||||| || || ||||| ||||| ||||| |||||||||    
T  29582331 agcaacagcctcatcagggttgatgctcatgcacaaatccttccccttgaaaaattcttgcaatagctgatgcactttgggaattctagaagagccacca 29582232  T
Q  109 a 109  Q
    |    
T  29582231 a 29582231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 8581378 - 8581493
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacca 108  Q
    |||||| |||||||||||||| ||| |||| || || ||||||||    ||||| ||||| ||||| |||   ||||| ||||||||||| || ||||||    
T  8581378 agcaacagcctcatcagggttgatgctcttgcataattccttcccctggaaaaactcctgtaatagctgtctcactttaggaatcctagaagaaccacca 8581477  T
Q  109 acaagaacaacatcat 124  Q
    ||||| ||||||||||    
T  8581478 acaaggacaacatcat 8581493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 8590364 - 8590458
Alignment:
Q  57 aaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatgtatagcgctcttgtccatcttggcat 151  Q
    |||||| || |||||||| || || ||||| ||||||||||| || ||||||||||| |||||||||| || |  | ||||||||||||| ||||    
T  8590364 aaaaaagtcttgcaatagctgctgcactttgggaatcctagaagaaccaccaacaagtacaacatcatctacaatgttcttgtccatcttagcat 8590458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 8383308 - 8383204
Alignment:
Q  67 tgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactct 166  Q
    |||||||| | ||| ||||| |||||||| || || ||||| |  ||||||||||||| || |   ||||||| |||||| |||||||||||||| ||||    
T  8383308 tgcaatagctcttgcactttgggaatcctcgaagaaccaccgatgagaacaacatcatctacactactcttgttcatcttagcatcagtaagacagctct 8383209  T
Q  167 caaca 171  Q
    |||||    
T  8383208 caaca 8383204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 8017845 - 8017760
Alignment:
Q  67 tgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatgtatagcgctcttgtccatcttggcatc 152  Q
    ||||| ||||| || ||||| ||||| ||||  || || |||||||||||||||||||| | || | ||||||||||||| |||||    
T  8017845 tgcaacagttgctgaactttgggaattctagttgaaccgccaacaagaacaacatcatgaacagagttcttgtccatcttagcatc 8017760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 43625139 - 43625308
Alignment:
Q  58 aaaaattcctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaa 157  Q
    ||||| |||||||| || |||| |||||||||||| ||||||||||| |||||||| |||||||| || ||||| |||||||||| |||||||||| |||    
T  43625139 aaaaactcctgcaacagctgttttacttttggaattctagaggagccgccaacaaggacaacatcgtggatagcactcttgtccaacttggcatcaataa 43625238  T
Q  158 gacaactctcaacaattttcaaacactcgttgaagagatccatattgatttcctcaaacttagcacgagt 227  Q
    ||||||||| |||| ||||||||||||||||||| ||||||||||| ||||| ||||| || ||||||||    
T  43625239 gacaactcttaacagttttcaaacactcgttgaaaagatccatatttatttcatcaaatttggcacgagt 43625308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 14703096 - 14703295
Alignment:
Q  19 tcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaa 118  Q
    ||||||||||||||| | || ||||| ||||||||    ||||| ||||| |||| ||| |||||||| ||||||| ||| || ||||| ||||||||||    
T  14703096 tcatcagggttaatgctgttgcacaactccttcccctggaaaaagtcctgtaataattgctgtactttgggaatccgagaagacccaccgacaagaacaa 14703195  T
Q  119 catcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgatttcctcaaactt 218  Q
    |||||| ||     |||||||||||||| |||||| ||||||||||||||||||| |||| |||||| || || |  |||||||| ||||| ||||||||    
T  14703196 catcatctactctactcttgtccatcttagcatcaataagacaactctcaacaatcttcacacactcattaaaaaagtccatattcatttcttcaaactt 14703295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 12245896 - 12245734
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacca 108  Q
    |||||| ||||| |||||||||||| |||| ||||| ||||||||    ||||| ||||| ||||| ||||| ||||| ||||||||||| || ||||||    
T  12245896 agcaacagcctcgtcagggttaatgctcttgcacaattccttcccgttgaaaaagtcctgtaatagctgttggactttgggaatcctagaagatccacca 12245797  T
Q  109 acaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaaca 171  Q
    ||||| |||| ||||| |||||  |||||||||||||| |||||  ||| |||||||||||||    
T  12245796 acaagtacaaaatcatctatagtactcttgtccatctttgcatccataatacaactctcaaca 12245734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 11999093 - 11999247
Alignment:
Q  16 gcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaa 115  Q
    |||||||||||||||||| |||| ||||| ||||||||    ||||| || || ||||| ||||| ||||| ||| ||||||| || ||||||||||| |    
T  11999093 gcctcatcagggttaatgctcttgcacaactccttcccgttgaaaaagtcatgtaatagctgttggactttggga-tcctagaagatccaccaacaagta 11999191  T
Q  116 caacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaaca 171  Q
    ||||||||| |||||  |||||||||||||| |||||  ||| |||||||||||||    
T  11999192 caacatcatctatagtactcttgtccatctttgcatccataatacaactctcaaca 11999247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 16662482 - 16662264
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccc-tgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacc 107  Q
    |||||| |||||||||||||| ||| |||| ||||| |||||||| |  || || || | |||||| ||  || ||||||||||||||||| ||||| ||    
T  16662482 agcaacagcctcatcagggttgatgctcttgcacaactccttcccattgaagaagttac-gcaataattcctgcacttttggaatcctagacgagccccc 16662384  T
Q  108 aacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgatt 207  Q
     |||||||||| |||||||| | | | |||||||||||| | |||   || ||||||||||||||| |||| ||||||||| || ||  |||||||||||    
T  16662383 gacaagaacaatatcatgtacaccccccttgtccatctttgaatccacaaaacaactctcaacaatcttcatacactcgttaaaaaggcccatattgatt 16662284  T
Q  208 tcctcaaacttagcacgagt 227  Q
    || ||||||||  |||||||    
T  16662283 tcttcaaacttgacacgagt 16662264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 12234368 - 12234576
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacca 108  Q
    |||||| ||||| |||||||||||  |||| ||||  ||||||||    ||||| |||||||||||||| || ||||| |||||||||||||| || |||    
T  12234368 agcaaccgcctc-tcagggttaatactcttgcacagctccttccccttgaaaaaatcctgcaatagttgctgcactttgggaatcctagaggacccgcca 12234466  T
Q  109 acaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgattt 208  Q
    | ||| ||||| ||||  |     || ||||||||||| |||||| ||||||||||||||||||| |||| ||||||  | |  ||||||||||| ||||    
T  12234467 ataaggacaacttcatccaccctacttttgtccatcttagcatcactaagacaactctcaacaatcttcatacactcaataagaagatccatattcattt 12234566  T
Q  209 cctcaaactt 218  Q
    ||||||||||    
T  12234567 cctcaaactt 12234576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 224
Target Start/End: Complemental strand, 16657934 - 16657792
Alignment:
Q  82 acttttggaatcctagaggagccaccaacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaac 181  Q
    ||||| ||||||||||| |||||||| ||||||||||| ||||  ||| | |   ||| |||||| | ||||  ||||||| |||||||| |||||| ||    
T  16657934 actttgggaatcctagatgagccacccacaagaacaacgtcatcaatatcaccaatgtgcatctttgaatcacgaagacaattctcaacagttttcatac 16657835  T
Q  182 actcgttgaagagatccatattgatttcctcaaacttagcacg 224  Q
    |||| ||||| ||||||||||| |||||||||||||| |||||    
T  16657834 actcattgaaaagatccatattaatttcctcaaacttggcacg 16657792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 7541904 - 7542113
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacca 108  Q
    |||||| ||||||||||| |||||| |||| ||||| ||||| ||    ||||| ||||  ||||| || |||||| | |||||||| || || || ||     
T  7541904 agcaacagcctcatcaggattaatgctcttgcacaagtcctttccattgaaaaagtcctttaatagctgatgtactatgggaatcctcgaagacccgccg 7542003  T
Q  109 acaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgattt 208  Q
    ||||| |||||||||| |||   |||||||||||| || |||||| ||||||| ||  |||||||  ||| ||||||||| || ||||||||||| || |    
T  7542004 acaaggacaacatcatctatcatgctcttgtccatattagcatcaataagacagcttccaacaatcgtcatacactcgttaaaaagatccatattcatct 7542103  T
Q  209 cctcaaactt 218  Q
    ||||||||||    
T  7542104 cctcaaactt 7542113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 12259064 - 12258855
Alignment:
Q  16 gcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaa 115  Q
    ||||||||||| |||||| |||| ||||| || |||||    ||||| ||||| ||||| || || |||||  |||||||||| || ||||| ||||| |    
T  12259064 gcctcatcaggattaatgctcttgcacaactctttccccttgaaaaaatcctgtaatagctgctgcactttgagaatcctagaagacccacctacaagga 12258965  T
Q  116 caacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgatttcctcaaa 215  Q
    ||||||||| || |   ||||||||| | || ||||| |||||||||||||||||| | ||||  || || ||||| || |||| ||| |||||||||||    
T  12258964 caacatcatctacattactcttgtccgtgttagcatccgtaagacaactctcaacagtcttcatgcattcattgaaaagttccaaatttatttcctcaaa 12258865  T
Q  216 cttagcacga 225  Q
    ||| ||||||    
T  12258864 cttggcacga 12258855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 39373366 - 39373417
Alignment:
Q  117 aacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctca 168  Q
    |||||||||||||||  |||||||||||||||||||||| ||||||||||||    
T  39373366 aacatcatgtatagcaatcttgtccatcttggcatcagtgagacaactctca 39373417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 30774930 - 30775148
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccc-tgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacc 107  Q
    |||||||||||||||||| || ||| |||| |||||||||||||| |  || ||||| | |||||||||  || ||||| ||||||||||| || |||||    
T  30774930 agcaactgcctcatcaggattgatgctcttgcacaaatccttcccattgaagaaattac-gcaatagttcctgcactttgggaatcctagaagaaccacc 30775028  T
Q  108 aacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgatt 207  Q
     |||||||||| ||||| || |   |||||||| | ||| | |||||||||||||||||||||| | |  | |||||| || || || ||||||||||||    
T  30775029 gacaagaacaatatcatctacactactcttgtctacctttgaatcagtaagacaactctcaacagtctgtatacactcattaaaaaggtccatattgatt 30775128  T
Q  208 tcctcaaacttagcacgagt 227  Q
    |||||||||||  |||||||    
T  30775129 tcctcaaacttgacacgagt 30775148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 35132141 - 35132293
Alignment:
Q  16 gcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaa 115  Q
    |||||||| ||||||||| |||| ||||| |||||||||   ||||| |  |||||||| || || ||||| ||||||||||| || || ||||||||||    
T  35132141 gcctcatcggggttaatgctcttgcacaactccttccctttgaaaaagttttgcaatagctgctgcactttgggaatcctagaagaccctccaacaagaa 35132240  T
Q  116 caacatcatgta-tagcgctcttgtccatcttggcatcagtaagacaactctc 167  Q
    ||||||||| ||     ||||||||||||||| |||||| | |||||||||||    
T  35132241 caacatcatctacccttgctcttgtccatcttagcatcaatgagacaactctc 35132293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 9336332 - 9336266
Alignment:
Q  58 aaaaattcctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcat 124  Q
    ||||||||  ||||||||| ||| ||||| ||||||||||| |||||||| |||||||||| |||||    
T  9336332 aaaaattctagcaatagttcttgcactttcggaatcctagacgagccacccacaagaacaatatcat 9336266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 23588165 - 23588107
Alignment:
Q  67 tgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatg 125  Q
    ||||| |||||||| || || |||||||||| ||| |||||||||||||||||||||||    
T  23588165 tgcaaaagttgttgaaccttgggaatcctagtggatccaccaacaagaacaacatcatg 23588107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 23597075 - 23596960
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacca 108  Q
    |||||| |||||||||||||| ||| ||||||| |  ||||||||    || || || ||||| |||||||| || || ||||||||||  || || |||    
T  23597075 agcaacagcctcatcagggttgatgctcttacaaagttccttcccattgaagaaatcttgcaaaagttgttgaaccttgggaatcctagtcgatccgcca 23596976  T
Q  109 acaagaacaacatcat 124  Q
    ||||||||||||||||    
T  23596975 acaagaacaacatcat 23596960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 54396156 - 54396217
Alignment:
Q  64 tcctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatg 125  Q
    |||||||| || ||||| |||||||||||||| |  || ||||||||||||||||| |||||    
T  54396156 tcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatg 54396217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 4679047 - 4678829
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacca 108  Q
    |||||| |||||||| ||||| ||  |||| |||||||||||||    |||||| || |||||||| |  || ||||| |||||||| || || |||||     
T  4679047 agcaacagcctcatctgggttgatactcttgcacaaatccttccgcttaaaaaagtcttgcaatagatcctgcactttgggaatcctcgatgaaccaccc 4678948  T
Q  109 acaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgattt 208  Q
    ||||||||||||||||  |||   |||  |  |||||| | |||| |||||||||||| |||| ||| || |||||||||||| || |||||||| ||||    
T  4678947 acaagaacaacatcatcaatattactcccgcgcatctttgaatcactaagacaactcttaacagtttccatacactcgttgaaaaggtccatattaattt 4678848  T
Q  209 cctcaaacttagcacgagt 227  Q
    |||||||||| ||||||||    
T  4678847 cctcaaacttggcacgagt 4678829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 15594712 - 15594930
Alignment:
Q  9 agcaactgcctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccacca 108  Q
    |||||| |||||||||||||| ||| || | ||||| ||||| ||  | ||||| |||| |||||||||||| ||||| ||||||||||| || ||||||    
T  15594712 agcaacagcctcatcagggttgatgctcatgcacaattcctttccctcgaaaaaatccttcaatagttgttgcactttgggaatcctagaagacccacca 15594811  T
Q  109 acaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgattt 208  Q
    ||||  |||| ||||| || |   ||||| | |||||| ||||||  ||||||||||||||| || |||| ||| || || || |  ||||| |||||||    
T  15594812 acaatgacaatatcatttacactactcttattcatcttagcatcatcaagacaactctcaactatcttcatacaatccttaaaaaagtccatgttgattt 15594911  T
Q  209 cctcaaacttagcacgagt 227  Q
    | |||||||| | ||||||    
T  15594912 cttcaaacttggaacgagt 15594930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 34467229 - 34467057
Alignment:
Q  58 aaaaattcctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatgtatagcgctcttgtccatcttggcatcagtaa 157  Q
    ||||| ||| ||||||| || || ||||| ||||||||||| ||||| || ||||| ||| ||||||| | |   ||| |||||||||| ||||||  ||    
T  34467229 aaaaagtcccgcaatagctgctgcactttgggaatcctagaagagcccccgacaaggacagcatcatgcacactactcgtgtccatcttagcatcaacaa 34467130  T
Q  158 gacaactctcaacaattttca---aacactcgttgaagagatccatattgatttcctcaaacttagcacgagt 227  Q
    |||||||| |||||||  |||   |  | || || ||||  ||||||||||||||||||||||| ||||||||    
T  34467129 gacaactcacaacaatcctcatgcattaatctttaaagaagtccatattgatttcctcaaacttggcacgagt 34467057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 52549353 - 52549293
Alignment:
Q  158 gacaactctcaacaattttcaaacactcgttgaagagatccatattgatttcctcaaactt 218  Q
    ||||||| |||||||| |||| |||||| || || || |||||||| ||||||||||||||    
T  52549353 gacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaaactt 52549293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University