View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2673_low_43 (Length: 208)
Name: NF2673_low_43
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2673_low_43 |
 | |
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| [»] scaffold1207 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 11209454 - 11209654
Alignment:
| Q |
1 |
cacaaaatggttcaccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgatatcaccattctcaaatgtg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
11209454 |
cacaaaatggttcaccatt---gcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaatagccttaacattgatatcaccatcctcaaatgtg |
11209550 |
T |
|
| Q |
101 |
agaatagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtcaaagccatatgcaattgcag |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||||||||||| |
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|
| T |
11209551 |
agaacagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacgtccatgattaaatggtttcatgccaaagccatatgcaattgcag |
11209650 |
T |
|
| Q |
201 |
ctgc |
204 |
Q |
| |
|
|||| |
|
|
| T |
11209651 |
ctgc |
11209654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 11276016 - 11276216
Alignment:
| Q |
1 |
cacaaaatggttcaccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgatatcaccattctcaaatgtg |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||| ||| |
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|
| T |
11276016 |
cacaaaatggttcaccatt---gcattatcaaagtcttgtcccccgaggtgagtgtctcctccaatggccttaacattgatatcaccattctcaaaagtg |
11276112 |
T |
|
| Q |
101 |
agaatagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtcaaagccatatgcaattgcag |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
11276113 |
agaacagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatgattaaatggtttcgtgttaaagccatatgcaattgcag |
11276212 |
T |
|
| Q |
201 |
ctgc |
204 |
Q |
| |
|
|||| |
|
|
| T |
11276213 |
ctgc |
11276216 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 11170632 - 11170832
Alignment:
| Q |
1 |
cacaaaatggttcaccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgatatcaccattctcaaatgtg |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || | | ||||||||||||||||||||||||||||||| |
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|
| T |
11170632 |
cacaaaatggttcaccatt---gcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtg |
11170728 |
T |
|
| Q |
101 |
agaatagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtcaaagccatatgcaattgcag |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
11170729 |
agaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcag |
11170828 |
T |
|
| Q |
201 |
ctgc |
204 |
Q |
| |
|
|||| |
|
|
| T |
11170829 |
ctgc |
11170832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 11196785 - 11196985
Alignment:
| Q |
1 |
cacaaaatggttcaccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgatatcaccattctcaaatgtg |
100 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||| |||||||||||| |
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|
| T |
11196785 |
cacaaaatggttcaccattgt---attatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtg |
11196881 |
T |
|
| Q |
101 |
agaatagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtcaaagccatatgcaattgcag |
200 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| ||||| |||||||||| ||||||||||| |||||| |||||| |||||| |||||||||||||||| |
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|
| T |
11196882 |
agaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcag |
11196981 |
T |
|
| Q |
201 |
ctgc |
204 |
Q |
| |
|
|||| |
|
|
| T |
11196982 |
ctgc |
11196985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 11199950 - 11200150
Alignment:
| Q |
1 |
cacaaaatggttcaccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgatatcaccattctcaaatgtg |
100 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||||||||||||||| |
|
|
| T |
11199950 |
cacaaaatggttcaccattgt---attatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccattctcaaatgtg |
11200046 |
T |
|
| Q |
101 |
agaatagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtcaaagccatatgcaattgcag |
200 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||| | ||| |||||||||||||||||||||| |||||| |||||| |||||| |||||||||||||||| |
|
|
| T |
11200047 |
agaatggacacatccagagtaccaccacctaaataaaaaatgaaaacatttctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcag |
11200146 |
T |
|
| Q |
201 |
ctgc |
204 |
Q |
| |
|
|||| |
|
|
| T |
11200147 |
ctgc |
11200150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 11156332 - 11156532
Alignment:
| Q |
1 |
cacaaaatggttcaccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgatatcaccattctcaaatgtg |
100 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||| |||||||||||| |
|
|
| T |
11156332 |
cacaaaatggttcaccattgt---attatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcacctttctcaaatgtg |
11156428 |
T |
|
| Q |
101 |
agaatagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtcaaagccatatgcaattgcag |
200 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||| |||||||||| | ||||||||| |||||| |||||| |||||| |||||||||||||||| |
|
|
| T |
11156429 |
agaatggacacgtccaaagtaccacctcctaaatcaaaaatgaaaacatgtttacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcag |
11156528 |
T |
|
| Q |
201 |
ctgc |
204 |
Q |
| |
|
|||| |
|
|
| T |
11156529 |
ctgc |
11156532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 11161199 - 11161399
Alignment:
| Q |
1 |
cacaaaatggttcaccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgatatcaccattctcaaatgtg |
100 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||| ||||||||||| |
|
|
| T |
11161199 |
cacaaaatggttcaccattgt---attatcaaagtcttgtcccctaaggtgagtgtctcctgcaatcgccttaacattgatagcaccaatctcaaatgtg |
11161295 |
T |
|
| Q |
101 |
agaatagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtcaaagccatatgcaattgcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||| |||||||||| | ||||||||| |||||| |||||| |||||| ||||||||||||||| |
|
|
| T |
11161296 |
agaatagacacgtccaaagtaccaccacctaaataaaaaatgaaaacatgtatacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcat |
11161395 |
T |
|
| Q |
201 |
ctgc |
204 |
Q |
| |
|
|||| |
|
|
| T |
11161396 |
ctgc |
11161399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 11241486 - 11241352
Alignment:
| Q |
70 |
cttaacattgatatcaccattctcaaatgtgagaatagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaat |
169 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||| || || || | ||||| ||||||||||| ||||| |
|
|
| T |
11241486 |
cttaacattgatagcaccattctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcgaaaattagaacatgtctacatccatgattaaga |
11241387 |
T |
|
| Q |
170 |
ggtttcttgtcaaagccatatgcaattgcagctgc |
204 |
Q |
| |
|
| |||| ||| || |||||||||||||||| |||| |
|
|
| T |
11241386 |
gttttcatgttaaggccatatgcaattgcaactgc |
11241352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 155
Target Start/End: Complemental strand, 11314811 - 11314688
Alignment:
| Q |
32 |
aagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgatatcaccattctcaaatgtgagaatagacacgtccaaagtaccaccaccta |
131 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| | | |||| ||||| |||||||||||| ||||||||||||||| ||||||||||| ||||| | |
|
|
| T |
11314811 |
aagtcttgtcccccaaggtgagtgtctccgccaacggccctaactttgatggcaccattctcaagtgtgagaatagacacatccaaagtaccgccaccca |
11314712 |
T |
|
| Q |
132 |
agtcaaatatgaaaacatttctac |
155 |
Q |
| |
|
| || || |||||||||||||||| |
|
|
| T |
11314711 |
aatcgaagatgaaaacatttctac |
11314688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 208
Target Start/End: Original strand, 11133078 - 11133260
Alignment:
| Q |
26 |
ttatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgatatcaccattctcaaatgtgagaatagacacgtccaaagtaccac |
125 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||| | | ||| |||| || || || ||||||||||||||||| ||||| ||||||| |
|
|
| T |
11133078 |
ttatcaaagtcttgtcccccgaggtgagtatctccagcagtggctttagtggtgattccattcttatcgaatgtgagaatagacacatccaatgtaccac |
11133177 |
T |
|
| Q |
126 |
cacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtcaaagccatatgcaattgcagctgctgta |
208 |
Q |
| |
|
| ||||| ||||| | ||||||| | || ||| |||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11133178 |
ctcctaaatcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgta |
11133260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 950 - 1147
Alignment:
| Q |
1 |
cacaaaatggttcaccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgatatcaccattctcaaatgtg |
100 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| || |
|
|
| T |
950 |
cacaaaatggttcaccatt---gcgttatcaaagtcttgccccctgaggtgagtgtctcctacaatagccttaacattgatatcaccattctcaaatttg |
1046 |
T |
|
| Q |
101 |
agaatagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtcaaagccatatgcaattgcag |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
1047 |
agaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctatgtc---catgtgatggttttgtgtcaaagccatatgcaattgcag |
1143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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