View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2673_low_9 (Length: 523)
Name: NF2673_low_9
Description: NF2673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2673_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 43767619 - 43767112
Alignment:
| Q |
1 |
agacatggaggagaggaaagttccaagtgttactaaagtttaaatgacattgaactttttatattttatgtgtctttatctatatttctgtgaaatagat |
100 |
Q |
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| T |
43767619 |
agacatggaggagaggaaagttccaagtgttactaaagtttaaatgacattgaactttttatattttatgtgtctttatctatatttatgtgaaatagat |
43767520 |
T |
|
| Q |
101 |
aagcaaaggagcttaaaagttgacaacaaccttcacttctaaaaagaaagattaatgcatgtgttaagaaaccatactataatcaaaaacatataattct |
200 |
Q |
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| T |
43767519 |
aagcaaaggagcttaaaagttgacaacaaccttcacttctaaaaagaaagattaatgcatgtgttaagaaaccatactataatcaaaaacatataattct |
43767420 |
T |
|
| Q |
201 |
actacaatcaacttaatcnnnnnnnngtccactaaaacatttacaacattagaattaaattttcaaatataggaaatatcatttaaaattacaatgtacc |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43767419 |
actacaatcaacttaatcttttttttgtccactaaaacatttacaacattagaattaaattttcaaatataggaaatatcatttaaaattacaatgtacc |
43767320 |
T |
|
| Q |
301 |
atcattttcttttgcttgtcatgtttggaccacttataataaaataaaatatccatatcaataa-tccatgtatgaactgttcctttcagatttacagca |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43767319 |
atcattttcttttgcttgtcatgtttggaccacttataataaaataaaatatccatatcaataaatccatgtatgaactgttcctttcagatttacagca |
43767220 |
T |
|
| Q |
400 |
agaaataaattttatttcagacatttgaagttaaaatcagtgaatgaaaacgactgacgttataagaaacttttttctcaatttaccattcctgcataag |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43767219 |
agaaataaattttatttcagacatttgaagttaaaatcagtgaatgaaaacgactgaagttataagaaacttttttctcaatttaccattcctgcataag |
43767120 |
T |
|
| Q |
500 |
gttttatg |
507 |
Q |
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|||||||| |
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| T |
43767119 |
gttttatg |
43767112 |
T |
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