View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2674_high_13 (Length: 330)
Name: NF2674_high_13
Description: NF2674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2674_high_13 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 34 - 274
Target Start/End: Original strand, 27499329 - 27499572
Alignment:
| Q |
34 |
taaaggtcatactccaagaagggaacaagagaatggggattggaaatgagcaaaggatggtt---atgaataattatatattggtttcggtttagcaaag |
130 |
Q |
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| T |
27499329 |
taaaggtcaatctccaagaagggaacaagagaatggggattggaaatgagcaaaggatggttgttatgaataattggatatttgttgcggtttagcaaag |
27499428 |
T |
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| Q |
131 |
caaaagtccatgctttgagccaagtggtacctgcttttggagtggtaactaagagaatatcggtatcaagggcttgaaagttcttttgacaagataaaac |
230 |
Q |
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| T |
27499429 |
caaaagtcaatgctttgagccaagtggtacctgatttgggagcggtaactaagatgatatctgaatctagggcttgaaagtgcttctgacaagataaaac |
27499528 |
T |
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| Q |
231 |
accttggagaatccttgtggcaagccaaaatccttggtattgat |
274 |
Q |
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| T |
27499529 |
accttgaaatttttttgtggcaatccaaaatccttgatattgat |
27499572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 28 - 271
Target Start/End: Complemental strand, 27504597 - 27504351
Alignment:
| Q |
28 |
tcataataaaggtcatactccaagaagggaacaagagaatggggattggaaatgagcaaaggatggtt---atgaataattatatattggtttcggttta |
124 |
Q |
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| T |
27504597 |
tcatagtaaaggttaatctccatgaaaggaacaagaacatgagggttggaagtgagtaaaggatgatttttatgaatatttggatatttgttacggttta |
27504498 |
T |
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| Q |
125 |
gcaaagcaaaagtccatgctttgagccaagtggtacctgcttttggagtggtaactaagagaatatcggtatcaagggcttgaaagttcttttgacaaga |
224 |
Q |
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| T |
27504497 |
tcaaagcaaaagtcaatgctttgagccaagtggtacctgatttgggatttgtaactaagataatatctgtatcaatggcttgaaagtgcttttgaaaaga |
27504398 |
T |
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| Q |
225 |
taaaacaccttggagaatccttgtggcaagccaaaatccttggtatt |
271 |
Q |
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| T |
27504397 |
taaagcaccttggagaatcttgggagcaaaccaaaatccttgatatt |
27504351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 27544114 - 27544065
Alignment:
| Q |
265 |
tggtattgatggaagtaggacgtaatccatcctttttctaatggcaatgt |
314 |
Q |
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| T |
27544114 |
tggtattgatggaagtaggacgtaatccatcctttttctaatggcaatgt |
27544065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 121 - 311
Target Start/End: Original strand, 11317872 - 11318063
Alignment:
| Q |
121 |
tttagcaaagcaaaa-gtccatgctttgagccaagtggtacctgcttttggagtggtaactaagagaatatcggtatcaagggcttgaaagttcttttga |
219 |
Q |
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| T |
11317872 |
tttagcaaagcaaaaagtcaatgctttaagccaagtggtgcctgcttttggagtggtaactatgaggatatcagtatcaagggcttgaaattgcttatga |
11317971 |
T |
|
| Q |
220 |
caagataaaacaccttggagaatccttgtggcaagccaaaatccttggtattgatggaagtaggacgtaatccatcctttttctaatggcaa |
311 |
Q |
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| T |
11317972 |
caagataaagtaccttggagaatccttgtggtaagccaaaatccttgatattgatggaagtgggatgtaatccaacctttttctaatggcaa |
11318063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 21 - 308
Target Start/End: Original strand, 11439343 - 11439636
Alignment:
| Q |
21 |
atctttgtcataataaaggtcatactccaagaagggaacaagagaatggggattggaaatgagcaaaggatggtt------atgaataattatatattgg |
114 |
Q |
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| T |
11439343 |
atctttatcatagtaaaggtcaacctccaagaaggggacaagaacatgagggtttgaagtgagtaaaggatgattgaaattatgaatattttgatatttt |
11439442 |
T |
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| Q |
115 |
tttcggtttagcaaagcaaaagtccatgctttgagccaagtggtacctgcttttggagtggtaactaagagaatatcggtatcaagggcttgaaagttct |
214 |
Q |
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| T |
11439443 |
ttgcggtttattaaagcaaaggttaatgctttgagccaagtggtacctgatttgggagtggtaactaagaggatatctgtattaagggcttgaaagtgtt |
11439542 |
T |
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| Q |
215 |
tttgacaagataaaacaccttggagaatccttgtggcaagccaaaatccttggtattgatggaagtaggacgtaatccatcctttttctaatgg |
308 |
Q |
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| T |
11439543 |
tttgacaagataaaacaccttgaagaattctcgtgccaatccaaaatccttgatattgatgaaagtgggtactgatccatcctttttctaatgg |
11439636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 15460517 - 15460438
Alignment:
| Q |
157 |
gtacctgcttttggagtggtaactaagagaatatcggtatcaagggcttgaaagttcttttgacaagataaaacaccttg |
236 |
Q |
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| T |
15460517 |
gtacctgcttttggagaggtagcaaggattatatctgtatcatgggcttgaaagtgcttttgaaaagataaaactccttg |
15460438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 1675 - 1754
Alignment:
| Q |
157 |
gtacctgcttttggagtggtaactaagagaatatcggtatcaagggcttgaaagttcttttgacaagataaaacaccttg |
236 |
Q |
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| T |
1675 |
gtacctgcttttggagaggtagcaaggattatatctgtatcatgggcttgaaagtgcttttgaaaagataaaactccttg |
1754 |
T |
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