View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2674_low_1 (Length: 967)
Name: NF2674_low_1
Description: NF2674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2674_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 716; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 37 - 826
Target Start/End: Complemental strand, 29354762 - 29353974
Alignment:
| Q |
37 |
gaaatgaatgaatctcattctcatgagtattcatcnnnnnnnnnntcttgaatcagtatttagaaaggcttcttagttcttgagatacttgaaatctaat |
136 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29354762 |
gaaatgaatgaatctcattctcatgagtattcat-aaaaaaaatctcttgaatcagtatttagaaaggcttcttagttcttgagatacttgaaatctaat |
29354664 |
T |
|
| Q |
137 |
gaattatcaacacattcagctttgcttctataaccattcaacaatttcaacaactcagtagtattctcctttgttttctcctcacacccaacttgcaaca |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29354663 |
gaattatcaacacattcagctttgcttctataaccattcaacaatttcaacaactcagtagtattctcctttgttttctcctcacacccaacttgcaaca |
29354564 |
T |
|
| Q |
237 |
taaccaaaagtttctgaaaagcaccaagttgaattgcctcaatcaaaactctttcttccttcttctcacatagtatcttcctaacaatcccaacagcaaa |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29354563 |
taaccaaaagtttctgaaaagcaccaagttgaattgcctcaatcaaaactctttcttccttcttctcacatagtatcttcctaacaatcccaacagcaaa |
29354464 |
T |
|
| Q |
337 |
actagacgccaaaggagacaccctcaaaagcttcttaatcacaagaggcaaagctaaagcgttcgtttcaacaacctctttccctttcttgcaatcacat |
436 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29354463 |
actagatgccaaaggagacaccctcaaaagcttcttaatcacaagaggcaaagctaaagcgttcgtttgaacaacctctttccctttcttgcaatcacat |
29354364 |
T |
|
| Q |
437 |
aaacaatccaacacaccaagtgctttctcacatatccctttttctccatcaacaattgtttcaagcaaaaatgaaaccaaacctaattcaacaaactttt |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
29354363 |
aaacaatccaacacaccaagtgctttctcacatatccctttttctccatcaacaattgtttcaagcaaaaatgaaaccaaacccaattcaacaaaccttt |
29354264 |
T |
|
| Q |
537 |
cactaatttcatctctattgttcgcggatgaaaccaacttgaaaattgtggtcaaacatgcttttgtagcacttgacccaattggttccttaacaatctt |
636 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29354263 |
cactaatttcatctctatttttcgccgatgaaaccaacttgaaaattgtggtcaaacatgcttttgtagcacttgacccaattggttccttaacaatctt |
29354164 |
T |
|
| Q |
637 |
aaccaaaccctcaacaacaccttcaattcttgataactcctcaacattcatttccttaagcaacaaaacagcattttgtcttgcacctaaatctttacca |
736 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29354163 |
aaccaaaccctcaacaacaccttcaattcttgataactcctcaacattcatttctttaagcaacaaaacagcattttgtcttgcacctaaatctttgcca |
29354064 |
T |
|
| Q |
737 |
tctaaaaaccaaaccaaacaattcaaagacgaagacgataaacacatcttcgttttcgaatcaccaaaagaagttttaaaaatccatgtt |
826 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
29354063 |
tctaaaaaccaaaccaaacaattcaaagacgaagacgataaacacatcttcgttttcgaatcaccaaaagaagttttaacaatccatgtt |
29353974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 911 - 950
Target Start/End: Complemental strand, 29353889 - 29353850
Alignment:
| Q |
911 |
gaagaaactccatttccaattataaccctcttattcctct |
950 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
29353889 |
gaagaaactccatttccaattataaccctcttattcctct |
29353850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 142 - 284
Target Start/End: Complemental strand, 33090199 - 33090057
Alignment:
| Q |
142 |
atcaacacattcagctttgcttctataaccattcaacaatttcaacaactcagtagtattctcctttgttttctcctcacacccaacttgcaacataacc |
241 |
Q |
| |
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||||||||| || ||||||||| ||||||| ||||||||||||||||| ||||||| |||||||| || |||| |||| || |||||||||| ||| |
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| T |
33090199 |
atcaacacactctgctttgcttttataaccgttcaacaatttcaacaattcagtagctttctccttggtactctcagcacaacctacttgcaacaaaaca |
33090100 |
T |
|
| Q |
242 |
aaaagtttctgaaaagcaccaagttgaattgcctcaatcaaaa |
284 |
Q |
| |
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| ||||||||||| ||||||||||||||||||||||||| |
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| T |
33090099 |
agtagtttctgaaacatcccaagttgaattgcctcaatcaaaa |
33090057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 676 - 714
Target Start/End: Complemental strand, 33089662 - 33089624
Alignment:
| Q |
676 |
ctcaacattcatttccttaagcaacaaaacagcattttg |
714 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| |
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| T |
33089662 |
ctcaacattcatttccttaagcaacaaagaagcattttg |
33089624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 33089988 - 33089955
Alignment:
| Q |
356 |
accctcaaaagcttcttaatcacaagaggcaaag |
389 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |
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|
| T |
33089988 |
accctcaaaagcttcttaataacaagaggcaaag |
33089955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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