View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2674_low_10 (Length: 393)

Name: NF2674_low_10
Description: NF2674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2674_low_10
NF2674_low_10
[»] chr6 (5 HSPs)
chr6 (68-235)||(24495180-24495347)
chr6 (68-234)||(24491623-24491789)
chr6 (68-187)||(2810226-2810345)
chr6 (13-71)||(24494125-24494183)
chr6 (195-236)||(2810030-2810071)
[»] chr3 (1 HSPs)
chr3 (68-239)||(24358931-24359102)
[»] chr5 (2 HSPs)
chr5 (68-235)||(18556646-18556812)
chr5 (290-367)||(11203324-11203402)
[»] scaffold0003 (3 HSPs)
scaffold0003 (68-219)||(86693-86848)
scaffold0003 (13-71)||(93475-93533)
scaffold0003 (203-235)||(86645-86677)
[»] scaffold0076 (1 HSPs)
scaffold0076 (276-377)||(47228-47332)
[»] chr8 (1 HSPs)
chr8 (276-369)||(20134271-20134362)
[»] chr7 (1 HSPs)
chr7 (276-369)||(44357709-44357800)
[»] chr4 (1 HSPs)
chr4 (235-271)||(20854061-20854097)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 4e-85; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 68 - 235
Target Start/End: Complemental strand, 24495347 - 24495180
Alignment:
Q  68 agaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataact 167  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24495347 agaaacatatttgttgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaact 24495248  T
Q  168 ctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaaccttaacac 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24495247 ctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaaccttaacac 24495180  T

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Target: chr6; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 68 - 234
Target Start/End: Complemental strand, 24491789 - 24491623
Alignment:
Q  68 agaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataact 167  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24491789 agaaacatatttgttgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaact 24491690  T
Q  168 ctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaaccttaaca 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24491689 ctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaaccttaaca 24491623  T

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Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 68 - 187
Target Start/End: Complemental strand, 2810345 - 2810226
Alignment:
Q  68 agaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataact 167  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2810345 agaaacatatttgttgtcctaataattgcttcctagagctatggtttgactttctctaatcaattacagtgtgatattatttcttaatcacagaataact 2810246  T
Q  168 ctcatcttaaatgcttaata 187  Q
    ||| ||| ||||||||||||    
T  2810245 ctcgtctaaaatgcttaata 2810226  T

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Target: chr6; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 24494183 - 24494125
Alignment:
Q  13 agatgaataatgatggatcagatttggaattgacaaacccataggagagtaagaaagaa 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24494183 agatgaataatgatggatcagatttggaattgacaaacccataggagagtaagaaagaa 24494125  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 2810071 - 2810030
Alignment:
Q  195 tatctcttaatttaaaagccttggtcctgtaaccttaacact 236  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  2810071 tatctcttaatttaaaagccttggtcttgtaaccttaacact 2810030  T

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Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 68 - 239
Target Start/End: Complemental strand, 24359102 - 24358931
Alignment:
Q  68 agaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataact 167  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24359102 agaaacatatttgttgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaact 24359003  T
Q  168 ctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaaccttaacactaat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24359002 ctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaaccttaacaataat 24358931  T

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Target: chr5 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 68 - 235
Target Start/End: Original strand, 18556646 - 18556812
Alignment:
Q  68 agaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataact 167  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  18556646 agaaacatatttgctgtcctaataattgcttcctccagctatggtttgactttctctagtcaattatagtgtgatattatttcttgatcacagaataact 18556745  T
Q  168 ctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaaccttaacac 235  Q
    |||||||||||||||||||| ||  | |||||||||||||||||||||||||||||||||||||||||    
T  18556746 ctcatcttaaatgcttaatacta-gaatatctcttaatttaaaagccttggtcctgtaaccttaacac 18556812  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 290 - 367
Target Start/End: Original strand, 11203324 - 11203402
Alignment:
Q  290 acctctttaccttcttaaattgatatctatatgttt-gctcttttttgttggtgcatactagcacataatactttgata 367  Q
    ||||| |||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| |||||||||||||||||    
T  11203324 acctccttaccttcttaaattgatatctatgtgttttgctcttttttgtcggtgcatactaacacataatactttgata 11203402  T

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Target: scaffold0003 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 68 - 219
Target Start/End: Complemental strand, 86848 - 86693
Alignment:
Q  68 agaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataact 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  86848 agaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataact 86749  T
Q  168 ctcatcttaaatgcttaataata----ctagtatctcttaatttaaaagccttggt 219  Q
    |||||||||||||||||||| ||     || |||| ||||||||||||||||||||    
T  86748 ctcatcttaaatgcttaatactagaatataatatcacttaatttaaaagccttggt 86693  T

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Target: scaffold0003; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 93533 - 93475
Alignment:
Q  13 agatgaataatgatggatcagatttggaattgacaaacccataggagagtaagaaagaa 71  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  93533 agatgaataatgatggatcagattttgaattgacaaatccataggagagtaagaaagaa 93475  T

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Target: scaffold0003; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 86677 - 86645
Alignment:
Q  203 aatttaaaagccttggtcctgtaaccttaacac 235  Q
    |||||||||||||||||||||||||||||||||    
T  86677 aatttaaaagccttggtcctgtaaccttaacac 86645  T

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Target: scaffold0076 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 276 - 377
Target Start/End: Original strand, 47228 - 47332
Alignment:
Q  276 ctatgtgaagttacacctctttaccttcttaaattgatatctatatgtttgctcttttttgttggtgc----atactagcacataatactttgataggtg 371  Q
    |||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||    ||||||||||||||||||||||||||||    
T  47228 ctatgtgaagttacacctctttaccttcttaaattgatatctgtgt-tttgctcttttttgttggtgcatatatactagcacataatactttgataggtg 47326  T
Q  372 taagtg 377  Q
    ||||||    
T  47327 taagtg 47332  T

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Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 276 - 369
Target Start/End: Complemental strand, 20134362 - 20134271
Alignment:
Q  276 ctatgtgaagttacacctctttaccttcttaaattgatatctatatgtttgctcttttttgttggtgcatactagcacataatactttgatagg 369  Q
    |||||||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||| |||||||||||||||||||||||||||||    
T  20134362 ctatgtgaagttacacctctttaccttcttaaattgatatctgtgt-tttgct-ttttttgttgttgcatactagcacataatactttgatagg 20134271  T

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Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 276 - 369
Target Start/End: Original strand, 44357709 - 44357800
Alignment:
Q  276 ctatgtgaagttacacctctttaccttcttaaattgatatctatatgtttgctcttttttgttggtgcatactagcacataatactttgatagg 369  Q
    |||||||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||| |||||||||||||||||||||||||||||    
T  44357709 ctatgtgaagttacacctctttaccttcttaaattgatatctgtgt-tttgct-ttttttgttgttgcatactagcacataatactttgatagg 44357800  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 20854061 - 20854097
Alignment:
Q  235 ctaatgatcttgcagaatcaattctagtaatcctgtt 271  Q
    |||||||||||||||||||||||| ||||||||||||    
T  20854061 ctaatgatcttgcagaatcaattccagtaatcctgtt 20854097  T

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