View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2674_low_11 (Length: 387)
Name: NF2674_low_11
Description: NF2674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2674_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 40025503 - 40025876
Alignment:
| Q |
1 |
tccccatcatcaatccccttaccacttgtctccaaagcaacttcccttgaaattgaaaccgcatcagttgaaggcaaaacattctcctcttcagctactg |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40025503 |
tccccatcatcaattcccttaccacttgtctccaaagcaacttcccttgaaattgaaaccacatcagttgaaggcaaaacattctcctcttcagctactg |
40025602 |
T |
|
| Q |
101 |
tcatgtccttatctgtttcaaccacttcagttaccttaaatccttcattattgtcttttgaagtagctaattcagtttgtgccaccccatcactatcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40025603 |
tcatgtccttatctgtttcaaccacttcagttaccttaaatccttcattattgtcttttgaagtagctaattcagtttgtgccaccccat---gatcttc |
40025699 |
T |
|
| Q |
201 |
aatggatttgcaatcttcttctcctttctcatccttcaattccacttctagagtttctgaggctattttattctcaacttgattaacttctattgtgtca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40025700 |
aatggatttgcaatcttcttctcctttctcatccttcaattccacttctagagtttctgaggccattttattctcaacttgattaacttctattgtgtca |
40025799 |
T |
|
| Q |
301 |
cttgattcattgggtgaagacacattaagactattatcaagagattcaaaatctgtttcagaaccatcttctctctg |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
40025800 |
cttgattcattgggtgaagacacattaagactattatcaagagattcaaaatctgtttcagaagcatcttctgtctg |
40025876 |
T |
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