View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2674_low_15 (Length: 332)
Name: NF2674_low_15
Description: NF2674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2674_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 54572173 - 54571870
Alignment:
| Q |
18 |
aggaagggccaacaaggctattccgagcatccaccaaaaagcgttgaacctctttaatggctttctttctggtattagacaatgaagcaagtctgagcat |
117 |
Q |
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| T |
54572173 |
aggaagggccaacaaggttattccgagcatccaccaaaaagcgttgaacctctttaatggctttctttctggtattagacaatgaagcaagtctgagcat |
54572074 |
T |
|
| Q |
118 |
ggtttgtgaatcaacaagggaatcattgataagcgttttccagagtctccattttggagataacaaataacttccctcctccaatttttgaaacctacgg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
54572073 |
ggtttgtgaatcaacaagggaatcattgataagcgttttccagagtctccattttggagttaacaaataacttccctcctccaatttttgaaacctacgg |
54571974 |
T |
|
| Q |
218 |
ttccatattctgtcaactgctgctttgaggtagttagatttaccacctgtttcaaggtacttaactgtacattccacagcaatgtagaaataagcagatt |
317 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54571973 |
ttccatattctgtcaactgctgcttggaggtagttagatgtaccacctgcttcaaggtacttaactgtacattccacagcaatgtagaaataagcagatt |
54571874 |
T |
|
| Q |
318 |
tcat |
321 |
Q |
| |
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|||| |
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| T |
54571873 |
tcat |
54571870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 55155440 - 55155137
Alignment:
| Q |
18 |
aggaagggccaacaaggctattccgagcatccaccaaaaagcgttgaacctctttaatggctttctttctggtattagacaatgaagcaagtctgagcat |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55155440 |
aggaagggccaacaaggttattccgagcatccaccaaaaagcgttgaacctctttaatggctttctttctggtattagacaatgaagcaagtctgagcat |
55155341 |
T |
|
| Q |
118 |
ggtttgtgaatcaacaagggaatcattgataagcgttttccagagtctccattttggagataacaaataacttccctcctccaatttttgaaacctacgg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
55155340 |
ggtttgtgaatcaacaagggaatcattgataagcgttttccagagtctccattttggagttaacaaataacttccctcctccaatttttgaaacctacgg |
55155241 |
T |
|
| Q |
218 |
ttccatattctgtcaactgctgctttgaggtagttagatttaccacctgtttcaaggtacttaactgtacattccacagcaatgtagaaataagcagatt |
317 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55155240 |
ttccatattctgtcaactgctgcttggaggtagttagatgtaccacctgcttcaaggtacttaactgtacattccacagcaatgtagaaataagcagatt |
55155141 |
T |
|
| Q |
318 |
tcat |
321 |
Q |
| |
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|||| |
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|
| T |
55155140 |
tcat |
55155137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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