View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2674_low_2 (Length: 739)

Name: NF2674_low_2
Description: NF2674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2674_low_2
NF2674_low_2
[»] chr4 (11 HSPs)
chr4 (1-452)||(39051482-39051936)
chr4 (563-722)||(39052055-39052215)
chr4 (249-357)||(51407769-51407878)
chr4 (260-361)||(8817144-8817246)
chr4 (262-367)||(12887838-12887944)
chr4 (249-301)||(18356784-18356836)
chr4 (249-301)||(18431971-18432023)
chr4 (249-301)||(23532892-23532944)
chr4 (249-367)||(2181112-2181227)
chr4 (261-299)||(37320724-37320762)
chr4 (268-301)||(52721869-52721902)
[»] chr5 (2 HSPs)
chr5 (253-360)||(9435977-9436085)
chr5 (249-360)||(27632628-27632740)
[»] chr7 (7 HSPs)
chr7 (270-366)||(5893347-5893444)
chr7 (249-361)||(40074705-40074818)
chr7 (249-366)||(36933787-36933905)
chr7 (249-367)||(15121887-15122006)
chr7 (249-301)||(3959135-3959187)
chr7 (249-301)||(47718822-47718874)
chr7 (253-367)||(26199179-26199294)
[»] chr8 (5 HSPs)
chr8 (249-367)||(20516241-20516360)
chr8 (267-367)||(19554601-19554702)
chr8 (249-367)||(38149853-38149969)
chr8 (268-301)||(6443338-6443371)
chr8 (267-367)||(19411732-19411832)
[»] chr6 (3 HSPs)
chr6 (249-367)||(34503380-34503498)
chr6 (249-301)||(32018611-32018663)
chr6 (268-321)||(13032358-13032411)
[»] chr2 (3 HSPs)
chr2 (249-367)||(36592508-36592623)
chr2 (249-361)||(1242273-1242386)
chr2 (249-360)||(3258057-3258167)
[»] scaffold0015 (1 HSPs)
scaffold0015 (248-362)||(79625-79740)
[»] chr1 (5 HSPs)
chr1 (261-360)||(27109402-27109501)
chr1 (261-367)||(39629191-39629298)
chr1 (261-321)||(15115628-15115688)
chr1 (261-321)||(15140144-15140204)
chr1 (249-301)||(17127831-17127883)
[»] chr3 (1 HSPs)
chr3 (268-301)||(52684842-52684875)


Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 39051482 - 39051936
Alignment:
Q  1 aagaggactaatgttggatgaactctaaaattattttggacaaaatggttacgtaatatactaatattgcattaacatatagtagattgtcacgtaagcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  39051482 aagaggactaatgttggatgaactctaaaattattttggacaaaatggttacgtaatatactaatattgcattaacata--gtagattgtcacgtaagcg 39051579  T
Q  101 gttcacatatcacttcatccactctaatggaaaaataaatggatttactattttgatagacacagttcaatttaagaagcatttttacaattttagcaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39051580 gttcacatatcacttcatccactctaatggaaaaataaatggatttactattttgatagacacagttcaatttaagaagcatttttacaattttagcaaa 39051679  T
Q  201 tcttggcgaataaaattctaaatctttacaatgcaa-ttannnnnnngattttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccag 299  Q
    |||||||||||||||||||||||||||||||||||| ||        ||||||||||||||||||| ||||||||||||||||||||| || ||||||||    
T  39051680 tcttggcgaataaaattctaaatctttacaatgcaatttttctttttgattttaagaagtaaaaatggaatttattaaaatcacaatgaattctaaccag 39051779  T
Q  300 cagaaaaaatattagattaggagtcgcaaaatagaacatacaaagaaaaacaaaagttgtactaaaactttcgcaccaaaattattattcttattgtttt 399  Q
    || ||  ||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  39051780 cacaaggaatgttagattatgagtcacaaaatagaacatacaaagaaaaacaaaagttgtactaaaactcttgcaccaaaattattattcttattgtttt 39051879  T
Q  400 tcaaatacattcttct----ttaactttcatattgtatccatcacaattattcacta 452  Q
    | ||||||||||||||    ||||||||||||| |||||||||||||||||||||||    
T  39051880 taaaatacattcttctctgcttaactttcatatcgtatccatcacaattattcacta 39051936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 563 - 722
Target Start/End: Original strand, 39052055 - 39052215
Alignment:
Q  563 cggacctaagctacttaccacatata-gaccaagttccttactacctaacctcccctggaggcctggacaactagttatatattcctttacttttttggt 661  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39052055 cggacctaagctacttaccacatacaagaccaagttccttactacctaacctcccctggaggcctggacaactagttatatattcctttaattttttggt 39052154  T
Q  662 ccttgctacctaatttctgtatctgtaggacatgagcaaatatatgctttatttatctttt 722  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  39052155 ccttgctacctaatttctgtatctgttggacatgagctaatatatgctttatttatctttt 39052215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 249 - 357
Target Start/End: Complemental strand, 51407878 - 51407769
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaaa 347  Q
    |||||||||| ||||||  |||||||||||||||||||   |||||||||||| ||  |||  |||| ||||||||| ||||||| ||||||||||||||    
T  51407878 ttttaagaagcaaaaatgaaatttattaaaatcacaataactcctaaccagcataaggaatgctagactaggagtcgtaaaatagcaacatacaaagaaa 51407779  T
Q  348 aacaaaagtt 357  Q
    || |||||||    
T  51407778 aataaaagtt 51407769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 260 - 361
Target Start/End: Original strand, 8817144 - 8817246
Alignment:
Q  260 aaaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaaaaacaaaagttg 358  Q
    |||||| ||||||||||||||||||||   ||||||| || | ||  ||| ||||| ||||||||| ||||||| ||||||||||| |||| ||||||||    
T  8817144 aaaaatggaatttattaaaatcacaataactcctaactagtataaggaatgttagactaggagtcgtaaaatagcaacatacaaaggaaaataaaagttg 8817243  T
Q  359 tac 361  Q
    |||    
T  8817244 tac 8817246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 262 - 367
Target Start/End: Original strand, 12887838 - 12887944
Alignment:
Q  262 aaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaaaaacaaaagttgta 360  Q
    ||||| |||||||||||||||||||| |||||||| |||| ||  |||  |||| |||| |||| ||| ||| |||||| |||| |||||||||||||||    
T  12887838 aaataaaatttattaaaatcacaatgaatcctaacaagcacaaggaatggtagactaggggtcgtaaagtagcaacatataaaggaaaacaaaagttgta 12887937  T
Q  361 ctaaaac 367  Q
    | |||||    
T  12887938 ccaaaac 12887944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 18356784 - 18356836
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagca 301  Q
    ||||||||||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  18356784 ttttaagaagtcaaaatggaatttattaaaatcacaatgaatcctaactagca 18356836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 18432023 - 18431971
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagca 301  Q
    ||||||||||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  18432023 ttttaagaagtcaaaatggaatttattaaaatcacaatgaatcctaactagca 18431971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 23532892 - 23532944
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagca 301  Q
    |||||| |||| |||||| ||||||||||||||||||||  ||||||||||||    
T  23532892 ttttaaaaagtcaaaataaaatttattaaaatcacaatgagtcctaaccagca 23532944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 367
Target Start/End: Complemental strand, 2181227 - 2181112
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatagaacatacaaagaaaa 348  Q
    ||||||||||| |||||  ||||||||||||| ||| || |||||||| |||| ||  |||  |||| ||||||||| ||| |  ||||||||||| |||    
T  2181227 ttttaagaagttaaaatgaaatttattaaaattacagtgaatcctaactagcacaaggaatgctagactaggagtcgtaaagt--aacatacaaag-aaa 2181131  T
Q  349 acaaaagttgtactaaaac 367  Q
    |||||||||| || |||||    
T  2181130 acaaaagttgaaccaaaac 2181112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 261 - 299
Target Start/End: Original strand, 37320724 - 37320762
Alignment:
Q  261 aaaatagaatttattaaaatcacaatggatcctaaccag 299  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  37320724 aaaatagaatttattaaaatcacaatgagtcctaaccag 37320762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 52721902 - 52721869
Alignment:
Q  268 aatttattaaaatcacaatggatcctaaccagca 301  Q
    |||||||||||||||||||| |||||||||||||    
T  52721902 aatttattaaaatcacaatgaatcctaaccagca 52721869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 253 - 360
Target Start/End: Original strand, 9435977 - 9436085
Alignment:
Q  253 aagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaaaaaca 351  Q
    |||||| |||||||||||||||||||||||||| | ||| |||||| || ||  ||| ||| ||||||||||| ||| ||| |||||| |||||||||||    
T  9435977 aagaagcaaaaatagaatttattaaaatcacaaagaatcttaaccaacataaggaatgttatattaggagtcgtaaagtagcaacatataaagaaaaaca 9436076  T
Q  352 aaagttgta 360  Q
    |||||||||    
T  9436077 aaagttgta 9436085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 360
Target Start/End: Complemental strand, 27632740 - 27632628
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaaa 347  Q
    |||| |||||| |||||  |||||||||||||||||||| |||||| || ||| ||  |||| || |||| || ||| ||| ||| ||||||||||| ||    
T  27632740 tttttagaagtcaaaatgaaatttattaaaatcacaatgaatcctatccggcataaggaatactaaattatgaatcgtaaagtagcaacatacaaaggaa 27632641  T
Q  348 aacaaaagttgta 360  Q
    |||||||||||||    
T  27632640 aacaaaagttgta 27632628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 5893444 - 5893347
Alignment:
Q  270 tttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaaaaacaaaagttgtactaaaa 366  Q
    |||||||||||||||||| ||||||||||||| ||  |||| |||| ||||||||| ||| ||| ||||||||||| |||| ||||||||||| ||||    
T  5893444 tttattaaaatcacaatgaatcctaaccagcacaaggaatactagaataggagtcgtaaagtagcaacatacaaaggaaaataaaagttgtaccaaaa 5893347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 249 - 361
Target Start/End: Complemental strand, 40074818 - 40074705
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaaa 347  Q
    ||||||||||| |||||||||||||||||||||||||||  |||||||| ||| ||  ||| ||||| ||||| ||| ||  ||| |||||| |||| ||    
T  40074818 ttttaagaagttaaaatagaatttattaaaatcacaatgagtcctaacctgcaaaatgaatgttagactaggattcgtaaggtagcaacatataaaggaa 40074719  T
Q  348 aacaaaagttgtac 361  Q
    ||||||| ||||||    
T  40074718 aacaaaaattgtac 40074705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 249 - 366
Target Start/End: Original strand, 36933787 - 36933905
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaaa 347  Q
    ||||||||||  ||||| ||||||||||||||||||||| |||||||| |||| ||  |||  |||  ||||||||| ||| ||| || ||||||| ||     
T  36933787 ttttaagaagccaaaatggaatttattaaaatcacaatgaatcctaactagcacaaggaatgctaggataggagtcgtaaagtagcaaaatacaaaaaag 36933886  T
Q  348 aacaaaagttgtactaaaa 366  Q
    |||||||||||||| ||||    
T  36933887 aacaaaagttgtaccaaaa 36933905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 249 - 367
Target Start/End: Complemental strand, 15122006 - 15121887
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaaa 347  Q
    ||||||||||  |||||  |||||||||||||||||| | ||||| ||||||| ||  |||  |||| ||||||||| ||  ||| ||||||||||| ||    
T  15122006 ttttaagaagccaaaatgaaatttattaaaatcacaaagaatcctgaccagcacaaggaatgctagactaggagtcgtaaggtagcaacatacaaaggaa 15121907  T
Q  348 aacaaaagttgtactaaaac 367  Q
    || ||||||||||| |||||    
T  15121906 aataaaagttgtaccaaaac 15121887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 3959187 - 3959135
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagca 301  Q
    |||||||||| ||||||  |||||||||||||||||||| ||||| |||||||    
T  3959187 ttttaagaaggaaaaatgaaatttattaaaatcacaatgaatcctgaccagca 3959135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 47718822 - 47718874
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagca 301  Q
    ||||||||||  |||||  |||||||||||||||||||| |||||||||||||    
T  47718822 ttttaagaagctaaaatgaaatttattaaaatcacaatgaatcctaaccagca 47718874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 367
Target Start/End: Original strand, 26199179 - 26199294
Alignment:
Q  253 aagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaaaaaca 351  Q
    ||||||| ||||| |||||||||||||| |||||| |||||||| |||| ||  |||  |||| ||||||||| ||| ||| || |||||||| |||| |    
T  26199179 aagaagtcaaaatggaatttattaaaattacaatgaatcctaacaagcacaaggaatgctagactaggagtcgtaaagtagcaatatacaaaggaaaata 26199278  T
Q  352 aaagttgtactaaaac 367  Q
    |||  ||||| |||||    
T  26199279 aaaactgtaccaaaac 26199294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 249 - 367
Target Start/End: Original strand, 20516241 - 20516360
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaaa 347  Q
    ||||||||||| ||||| |||||||||||||||||| || ||||||||||||| ||  |||  |||| || |||||| | | ||| ||||||||||  ||    
T  20516241 ttttaagaagtcaaaatggaatttattaaaatcacattgaatcctaaccagcacaaggaatgctagactaagagtcgtagagtagcaacatacaaacgaa 20516340  T
Q  348 aacaaaagttgtactaaaac 367  Q
    |||||||||||||| |||||    
T  20516341 aacaaaagttgtaccaaaac 20516360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 267 - 367
Target Start/End: Original strand, 19554601 - 19554702
Alignment:
Q  267 gaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaaaaacaaaagttgtactaaa 365  Q
    |||||||||||||||| || | ||||| |||| || || ||||  |||||||||||||| ||| ||| ||||||||||| |||| ||||||||||| |||    
T  19554601 gaatttattaaaatcataaagaatcctgaccaacacaagaaatgctagattaggagtcgtaaagtagcaacatacaaaggaaaataaaagttgtaccaaa 19554700  T
Q  366 ac 367  Q
    ||    
T  19554701 ac 19554702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 249 - 367
Target Start/End: Complemental strand, 38149969 - 38149853
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatagaacatacaaagaaaa 348  Q
    ||||||||||  |||||  ||||||||||||||||| || || |||||||||| ||  |||  |||| ||||||| | ||| ||  ||||||||||||||    
T  38149969 ttttaagaagctaaaatgaaatttattaaaatcacagtgaattctaaccagcacaaggaatgctagactaggagttgtaaagta--acatacaaagaaaa 38149872  T
Q  349 acaaaagttgtactaaaac 367  Q
      |||||||||||||||||    
T  38149871 caaaaagttgtactaaaac 38149853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 301
Target Start/End: Original strand, 6443338 - 6443371
Alignment:
Q  268 aatttattaaaatcacaatggatcctaaccagca 301  Q
    |||||||||||||||||||| |||||||||||||    
T  6443338 aatttattaaaatcacaatgaatcctaaccagca 6443371  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 367
Target Start/End: Complemental strand, 19411832 - 19411732
Alignment:
Q  267 gaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaaaaacaaaagttgtactaaa 365  Q
    |||||||||||||||| || | ||| | |||| || |||||||  |||| ||||||||| ||| ||| ||||||||||| |||| ||||||||||| |||    
T  19411832 gaatttattaaaatcataaagaatc-tgaccaacacaaaaaatgctagactaggagtcgtaaagtagcaacatacaaaggaaaataaaagttgtaccaaa 19411734  T
Q  366 ac 367  Q
    ||    
T  19411733 ac 19411732  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 249 - 367
Target Start/End: Complemental strand, 34503498 - 34503380
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaaa 347  Q
    ||||||||||  |||||  ||||||| |||||||||||| ||||||||||||||||  |||  |||  ||||||||| ||| ||| ||||||||| | ||    
T  34503498 ttttaagaaggcaaaatgaaatttat-aaaatcacaatgaatcctaaccagcagaaggaatgctaggctaggagtcgtaaagtagcaacatacaatggaa 34503400  T
Q  348 aacaaaagttgtactaaaac 367  Q
    |||||||||||||| |||||    
T  34503399 aacaaaagttgtaccaaaac 34503380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 32018663 - 32018611
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagca 301  Q
    ||||||||||| |||||  |||||||||||||||||||| |||||||||||||    
T  32018663 ttttaagaagttaaaatgaaatttattaaaatcacaatgaatcctaaccagca 32018611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 13032358 - 13032411
Alignment:
Q  268 aatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattagga 321  Q
    |||||||||||||||||||| ||||||||||||| || |||| ||||| |||||    
T  13032358 aatttattaaaatcacaatgaatcctaaccagcacaagaaatgttagaatagga 13032411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 249 - 367
Target Start/End: Original strand, 36592508 - 36592623
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatagaacatacaaagaaaa 348  Q
    ||||||||||  ||||| |||||||||||||||| | || ||||||||||||| ||  |||  |||| ||||||||| ||| |  ||||||||||| |||    
T  36592508 ttttaagaagctaaaatggaatttattaaaatcaaagtgaatcctaaccagcacaaggaatgctagactaggagtcgtaaagt--aacatacaaag-aaa 36592604  T
Q  349 acaaaagttgtactaaaac 367  Q
    ||||||||||||| |||||    
T  36592605 acaaaagttgtaccaaaac 36592623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 361
Target Start/End: Original strand, 1242273 - 1242386
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaaa 347  Q
    ||||||||||  ||||| ||||| |||||||||||||||  | |||||||||| ||| |||  |||| ||||| ||  ||  ||| ||||||||||| ||    
T  1242273 ttttaagaaggcaaaattgaattgattaaaatcacaatgagttctaaccagcacaaagaatgctagactaggattcctaaggtagcaacatacaaaggaa 1242372  T
Q  348 aacaaaagttgtac 361  Q
    ||||||||||||||    
T  1242373 aacaaaagttgtac 1242386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 360
Target Start/End: Complemental strand, 3258167 - 3258057
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaaa 347  Q
    ||||||||||| |||||  ||||||||||  ||||||||  |||||||||||| ||  |||  |||||||||||||  ||| ||| ||||||||||| ||    
T  3258167 ttttaagaagtcaaaatgtaatttattaa--tcacaatgactcctaaccagcacaaggaatgctagattaggagtccaaaagtagcaacatacaaaggaa 3258070  T
Q  348 aacaaaagttgta 360  Q
    || ||||||||||    
T  3258069 aataaaagttgta 3258057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 248 - 362
Target Start/End: Complemental strand, 79740 - 79625
Alignment:
Q  248 attttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaa 346  Q
    |||||||||||  ||||| |||||||||||||||||||||  ||||||||| || || ||||| ||||  || ||||   || ||| ||||||||||| |    
T  79740 attttaagaagccaaaatggaatttattaaaatcacaatgagtcctaaccaacataagaaatactagaccagaagtcattaagtagcaacatacaaagga 79641  T
Q  347 aaacaaaagttgtact 362  Q
    |||||||| |||||||    
T  79640 aaacaaaatttgtact 79625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 261 - 360
Target Start/End: Original strand, 27109402 - 27109501
Alignment:
Q  261 aaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatagaacatacaaagaaaaacaaaagttgta 360  Q
    |||||||||||||||||||||||||||  |||||||||||| || ||||  ||||  |||||||| |    |  |||||||||| |||||||||||||||    
T  27109402 aaaatagaatttattaaaatcacaatgagtcctaaccagcacaagaaatgctagacaaggagtcgtaggtaactacatacaaaggaaaacaaaagttgta 27109501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 261 - 367
Target Start/End: Original strand, 39629191 - 39629298
Alignment:
Q  261 aaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattaggagtcgcaaaatag-aacatacaaagaaaaacaaaagttgt 359  Q
    ||||| |||||||||||||||||||||  |||||||||||| ||  |||  ||||| || ||||| ||| ||| ||||||||||  |||| |||||||||    
T  39629191 aaaatggaatttattaaaatcacaatgattcctaaccagcacaaggaatgctagatcagaagtcgtaaagtagcaacatacaaaagaaaataaaagttgt 39629290  T
Q  360 actaaaac 367  Q
    || |||||    
T  39629291 accaaaac 39629298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 15115688 - 15115628
Alignment:
Q  261 aaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattagga 321  Q
    ||||| ||||||||||||||||||||| ||||||||||||  || |||| ||||| |||||    
T  15115688 aaaatggaatttattaaaatcacaatgaatcctaaccagcgcaagaaatgttagaatagga 15115628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 15140204 - 15140144
Alignment:
Q  261 aaaatagaatttattaaaatcacaatggatcctaaccagcagaaaaaatattagattagga 321  Q
    ||||| ||||||||||||||||||||| ||||||||||||  || |||| ||||| |||||    
T  15140204 aaaatggaatttattaaaatcacaatgaatcctaaccagcgcaagaaatgttagaatagga 15140144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 17127831 - 17127883
Alignment:
Q  249 ttttaagaagtaaaaatagaatttattaaaatcacaatggatcctaaccagca 301  Q
    ||||||||||| ||||||||| |||||||||||||||||  |||||| |||||    
T  17127831 ttttaagaagtcaaaatagaacttattaaaatcacaatgagtcctaatcagca 17127883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 52684875 - 52684842
Alignment:
Q  268 aatttattaaaatcacaatggatcctaaccagca 301  Q
    ||||||||||||||||| ||||||||||||||||    
T  52684875 aatttattaaaatcacagtggatcctaaccagca 52684842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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