View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2674_low_24 (Length: 236)
Name: NF2674_low_24
Description: NF2674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2674_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 36457825 - 36457623
Alignment:
| Q |
1 |
attttcggtctgctacctattttcgatgacatccatttccaactaagagattgaacacattaggaatactgtccataaaaattatattatttctagcaat |
100 |
Q |
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| T |
36457825 |
attttcggtctgctacctattttcgacgacattcatttccaactaagagattgaacacattaggaatactgtccataaaaattatattatttctagcaat |
36457726 |
T |
|
| Q |
101 |
ccatagagatcaaacaaccgctcaccacaacaacagaccgagcgagccttttgtttttcactccccataaagacacattatgctgcagcagatgaaccac |
200 |
Q |
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| T |
36457725 |
ccatagagaccaaacaaccgctcaccacaacaacagaccgagcgagccttttgtttttcactccccataaagacacattatgctgcagcagatgaaccac |
36457626 |
T |
|
| Q |
201 |
agg |
203 |
Q |
| |
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||| |
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| T |
36457625 |
agg |
36457623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 11628377 - 11628456
Alignment:
| Q |
56 |
cacattaggaatactgtccataaaaattatattatttctagcaatccatagagatcaaacaaccgctcaccacaacaaca |
135 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| | ||||||||| |
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| T |
11628377 |
cacattagaaatattgtccataaaaattatattatttctagcaatatatagagaccaaacaacctctcccaacaacaaca |
11628456 |
T |
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