View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2674_low_6 (Length: 495)

Name: NF2674_low_6
Description: NF2674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2674_low_6
NF2674_low_6
[»] chr2 (9 HSPs)
chr2 (329-478)||(45699951-45700100)
chr2 (114-258)||(45700148-45700292)
chr2 (114-258)||(4920356-4920500)
chr2 (100-176)||(32469802-32469878)
chr2 (101-176)||(28610662-28610737)
chr2 (10-79)||(34387667-34387736)
chr2 (10-81)||(45700353-45700424)
chr2 (213-247)||(4920305-4920339)
chr2 (41-79)||(28610786-28610824)
[»] chr1 (8 HSPs)
chr1 (5-221)||(26286940-26287158)
chr1 (114-258)||(51446265-51446408)
chr1 (101-176)||(14478919-14478994)
chr1 (101-216)||(5612433-5612548)
chr1 (5-81)||(5612596-5612672)
chr1 (10-79)||(24038738-24038807)
chr1 (41-81)||(14478832-14478872)
chr1 (10-78)||(51446134-51446202)
[»] chr7 (5 HSPs)
chr7 (114-211)||(39981988-39982085)
chr7 (101-176)||(41328872-41328947)
chr7 (107-221)||(43460215-43460329)
chr7 (10-79)||(7313436-7313505)
chr7 (10-78)||(39981857-39981925)
[»] chr8 (5 HSPs)
chr8 (101-238)||(42871449-42871586)
chr8 (41-81)||(42871361-42871401)
chr8 (124-175)||(39581288-39581339)
chr8 (10-79)||(39581147-39581216)
chr8 (10-75)||(44066441-44066506)
[»] chr4 (6 HSPs)
chr4 (5-81)||(1520324-1520400)
chr4 (101-176)||(1520448-1520523)
chr4 (101-176)||(26495695-26495770)
chr4 (101-176)||(8362795-8362870)
chr4 (101-179)||(31183416-31183494)
chr4 (41-81)||(26495817-26495857)
[»] chr3 (7 HSPs)
chr3 (5-81)||(54749607-54749683)
chr3 (101-221)||(54749731-54749851)
chr3 (101-176)||(13621427-13621502)
chr3 (101-176)||(49380356-49380431)
chr3 (41-81)||(13621340-13621380)
chr3 (41-81)||(49380269-49380309)
chr3 (10-79)||(22509323-22509392)
[»] chr6 (2 HSPs)
chr6 (101-176)||(11723441-11723516)
chr6 (41-81)||(11723354-11723394)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 329 - 478
Target Start/End: Complemental strand, 45700100 - 45699951
Alignment:
Q  329 cttttcgaatcttcctatgcataactgcagtcacttgggctatgtcaattacaacaagttaaaacatcacttaactacgtgaggctgaattcgagagcaa 428  Q
    |||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45700100 ctttccgaatcttcccatgcataactgcagtcacttgggctttgtcaattacaacaagttaaaacatcacttaactacgtgaggctgaattcgagagcaa 45700001  T
Q  429 gatagtgaataaatgctaggtgtggtacaaacattataataatgattgaa 478  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45700000 aatagtgaacaaatgctaggtgtggtacaaacattataataatgattgaa 45699951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 114 - 258
Target Start/End: Complemental strand, 45700292 - 45700148
Alignment:
Q  114 gtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaatcaatataagatgaccttgctccggtgaccaccgcgc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||  | |||||||| | |||||||||||||||    
T  45700292 gtgacaaaccaccaccataaacatactctccttcatattctctacaaaatccacaaataaaaatcaatattgggtgaccttgtttcggtgaccaccgcgc 45700193  T
Q  214 cggaaaattgtaccaccgcgtcggaacatatcaccactgcatccc 258  Q
    |||||||| |||||| || |||||||||||||||||| |||||||    
T  45700192 cggaaaatggtaccatcgtgtcggaacatatcaccaccgcatccc 45700148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 114 - 258
Target Start/End: Complemental strand, 4920500 - 4920356
Alignment:
Q  114 gtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaatcaatataagatgaccttgctccggtgaccaccgcgc 213  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||  | |||||||||||||||||||||||| |    
T  4920500 gtgacaaaccaccaacataaacatactctccttcatatcctctacaaaatccacaaagaaaaatcaatattgggtgaccttgctccggtgaccaccgcac 4920401  T
Q  214 cggaaaattgtaccaccgcgtcggaacatatcaccactgcatccc 258  Q
    || ||| | |||||||||||| ||||||||||||||| |||||||    
T  4920400 cgaaaagtggtaccaccgcgttggaacatatcaccaccgcatccc 4920356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 32469802 - 32469878
Alignment:
Q  100 tcacaaattgtttcgtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaa 176  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||  |||||||||||||    
T  32469802 tcacaaattgtttcgtgacaaaacaccaccataaatatactctccttcatattctctacaaaacccacaaagaaaaa 32469878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 28610737 - 28610662
Alignment:
Q  101 cacaaattgtttcgtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaa 176  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  28610737 cacaaattgtttcatgacaaaccaccaccataaacatattctccttcatattctctacaaaacccacaaagaaaaa 28610662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 34387736 - 34387667
Alignment:
Q  10 aacaatatacataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggaga 79  Q
    ||||| ||||||||||||  |||||||||  |||| ||||||||||| |||||||||||| ||| |||||    
T  34387736 aacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggaga 34387667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 45700424 - 45700353
Alignment:
Q  10 aacaatatacataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggagaca 81  Q
    ||||| |||||||||||||  | |||||| |||||||||||| |||| ||||| |||||| ||| |||||||    
T  45700424 aacaaaatacataatattcaccctctcttcgttctctatctcttcctgaaattaaatttttgataggagaca 45700353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 4920339 - 4920305
Alignment:
Q  213 ccggaaaattgtaccaccgcgtcggaacatatcac 247  Q
    ||||||||| |||||||||||||||||||||||||    
T  4920339 ccggaaaatggtaccaccgcgtcggaacatatcac 4920305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 28610824 - 28610786
Alignment:
Q  41 ttctctatctcatcctaaaatttaattttggatcggaga 79  Q
    ||||||||||||| || ||||||||||||||||||||||    
T  28610824 ttctctatctcattctgaaatttaattttggatcggaga 28610786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 26286940 - 26287158
Alignment:
Q  5 tctcgaacaatatacataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggagacannnnnnnagt--acaaaccctca 102  Q
    |||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||  |||||||||||    
T  26286940 tctcaaacaaaattcataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggagacatttttttagtgtacaaaccctca 26287039  T
Q  103 caaattgtttcgtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaatcaat-ataagatgaccttgctccgg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||| |||| ||  |||||  || ||||||    
T  26287040 caaattgtttcgtgacaaaccaccaccataaacatactctccttcatattttctacaaaacccacaaagaaaaa-caatgatcggatgaattttctccgg 26287138  T
Q  202 tgaccaccgcgccggaaaat 221  Q
     |||||||||||||||||||    
T  26287139 cgaccaccgcgccggaaaat 26287158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 114 - 258
Target Start/End: Original strand, 51446265 - 51446408
Alignment:
Q  114 gtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaatcaatataagatgaccttgctccggtgaccaccgcgc 213  Q
    |||||||||||||| |||||||||||| || ||||||||||||||||| |||||||||||||| ||||||  | |||||||||||||||||||||||||     
T  51446265 gtgacaaaccaccaacataaacatactttc-ttcatattctctacaaaatccacaaagaaaaaccaatattgggtgaccttgctccggtgaccaccgcgt 51446363  T
Q  214 cggaaaattgtaccaccgcgtcggaacatatcaccactgcatccc 258  Q
    || ||||| ||||||| |||||||||||||||||||| |||||||    
T  51446364 cgaaaaatggtaccactgcgtcggaacatatcaccaccgcatccc 51446408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 14478919 - 14478994
Alignment:
Q  101 cacaaattgtttcgtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaa 176  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14478919 cacaaattgtttcatgacaaaccaccaccataaacatactctccttcatattctctacaaaatccacaaagaaaaa 14478994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 5612548 - 5612433
Alignment:
Q  101 cacaaattgtttcgtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaatcaat-ataagatgaccttgctcc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||| |||| ||  |||||  || ||||    
T  5612548 cacaaattgtttcgtgacaaaccaccaccataaacatactctccttcatattttctacaaaacccacaaagaaaaa-caatgatcggatgaattttctcc 5612450  T
Q  200 ggtgaccaccgcgccgg 216  Q
    || ||||||||||||||    
T  5612449 ggcgaccaccgcgccgg 5612433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 5612672 - 5612596
Alignment:
Q  5 tctcgaacaatatacataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggagaca 81  Q
    |||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5612672 tctcaaacaaaatacgtaatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggagaca 5612596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 24038738 - 24038807
Alignment:
Q  10 aacaatatacataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggaga 79  Q
    ||||| ||||||||||||  |||||||||  |||| ||||||||||| |||||||||||| ||| |||||    
T  24038738 aacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggaga 24038807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 14478832 - 14478872
Alignment:
Q  41 ttctctatctcatcctaaaatttaattttggatcggagaca 81  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  14478832 ttctctatctcattctgaaatttaattttggatcggagaca 14478872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 51446134 - 51446202
Alignment:
Q  10 aacaatatacataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggag 78  Q
    ||||| |||||||||| || || ||||||||||||||||||| |||| ||||| |||||| ||| ||||    
T  51446134 aacaaaatacataatagtcatcctctctttgttctctatctcttcctgaaattaaattttagataggag 51446202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 39981988 - 39982085
Alignment:
Q  114 gtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaatcaatataagatgaccttgctccggtgaccaccgc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39981988 gtgacaaaccaccaccataaacatactctccttcatattctctacaaaatccacaaagaaaaatcaatataagatgaccttgctccggtgaccaccgc 39982085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 41328872 - 41328947
Alignment:
Q  101 cacaaattgtttcgtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaa 176  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  41328872 cacaaattgtttcatgacaaaccaccaccataaacatactctccttcatattctctacaaaacccacaaagaaaaa 41328947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 43460329 - 43460215
Alignment:
Q  107 ttgtttcgtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaatcaatataagatgaccttgctccggtgacc 206  Q
    ||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||  ||||||||||||||||  ||  |||||  ||||||||| ||||    
T  43460329 ttgtttcgtgacaaaacaccaccataaatatactctcctttatattctctacaaaacccacaaagaaaaatcatgatcggatgaatttgctccggcgacc 43460230  T
Q  207 accgcgccggaaaat 221  Q
    ||||| | |||||||    
T  43460229 accgcactggaaaat 43460215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 7313436 - 7313505
Alignment:
Q  10 aacaatatacataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggaga 79  Q
    ||||||||||||||||||  |||||||||  |||| ||||||||||| |||||||||||| ||| |||||    
T  7313436 aacaatatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggaga 7313505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 39981857 - 39981925
Alignment:
Q  10 aacaatatacataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggag 78  Q
    ||||| |||||||||||||  | |||||| |||||||||||| |||| ||||| |||||| ||| ||||    
T  39981857 aacaaaatacataatattcaccctctcttcgttctctatctcttcctgaaattaaattttagataggag 39981925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 42871449 - 42871586
Alignment:
Q  101 cacaaattgtttcgtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaatcaatataagatgaccttgctccg 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||  |  ||  |||||| ||||||||    
T  42871449 cacaaattatttcgtgacaaaccaccaccataaacatactctccttcatattctctacaaaacccacaaagaaaaactatgatcggatgactttgctccg 42871548  T
Q  201 gtgaccaccgcgccggaaaattgtaccaccgcgtcgga 238  Q
    | ||||||||| |||| ||||   ||||||||| ||||    
T  42871549 gcgaccaccgctccgggaaatacgaccaccgcgccgga 42871586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 42871361 - 42871401
Alignment:
Q  41 ttctctatctcatcctaaaatttaattttggatcggagaca 81  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  42871361 ttctctatctcattctgaaatttaattttggatcggagaca 42871401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 39581288 - 39581339
Alignment:
Q  124 accaccataaacatactctccttcatattctctacaaattccacaaagaaaa 175  Q
    ||||||||||| |||||||||||| ||||| ||||||| ||||| |||||||    
T  39581288 accaccataaaaatactctccttcgtattccctacaaaatccaccaagaaaa 39581339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 39581147 - 39581216
Alignment:
Q  10 aacaatatacataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggaga 79  Q
    ||||| ||||||||||||  |||||||||  |||| ||||||||||| ||||||| |||| ||| |||||    
T  39581147 aacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttattttttgattggaga 39581216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 44066506 - 44066441
Alignment:
Q  10 aacaatatacataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcg 75  Q
    ||||| ||||||||||||| || | ||||  |||||||||||||||| ||||||| |||| |||||    
T  44066506 aacaaaatacataatattcatcgtatcttccttctctatctcatccttaaatttattttttgatcg 44066441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 1520324 - 1520400
Alignment:
Q  5 tctcgaacaatatacataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggagaca 81  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1520324 tctcaaacaaaatacataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggagaca 1520400  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 1520448 - 1520523
Alignment:
Q  101 cacaaattgtttcgtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaa 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||    
T  1520448 cacaaattgtttcgtgacaaaccaccaccataaacatactctccttcatattttctacaaaacccacaaagaaaaa 1520523  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 26495770 - 26495695
Alignment:
Q  101 cacaaattgtttcgtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaa 176  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  26495770 cacaaattgtttcatgacaaaccaccaccataaacatactctccttcatattctctacaaaacccacaaagaaaaa 26495695  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 8362795 - 8362870
Alignment:
Q  101 cacaaattgtttcgtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaa 176  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||  ||| |||||||||    
T  8362795 cacaaattgtttcatgacaaaccaccaccataaacatactctcattcatattctctacaaaacccaaaaagaaaaa 8362870  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 31183494 - 31183416
Alignment:
Q  101 cacaaattgtttcgtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaatca 179  Q
    ||||||||||||   ||||||  ||||||||||| |||||||||||| ||||| ||||||| ||||| |||||||||||    
T  31183494 cacaaattgtttttcgacaaattaccaccataaaaatactctccttcgtattccctacaaaatccaccaagaaaaatca 31183416  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 26495857 - 26495817
Alignment:
Q  41 ttctctatctcatcctaaaatttaattttggatcggagaca 81  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  26495857 ttctctatctcattctgaaatttaattttggatcggagaca 26495817  T

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Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 54749607 - 54749683
Alignment:
Q  5 tctcgaacaatatacataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggagaca 81  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54749607 tctcaaacaaaatacataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggagaca 54749683  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 54749731 - 54749851
Alignment:
Q  101 cacaaattgtttcgtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaatcaat-ataagatgaccttgctcc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||| |||| ||  |||||  || ||||    
T  54749731 cacaaattgtttcgtgacaaaccaccaccataaacatactctccttcatattttctacaaaacccacaaagaaaaa-caatgatcggatgaattttctcc 54749829  T
Q  200 ggtgaccaccgcgccggaaaat 221  Q
    ||  ||||||||||||||||||    
T  54749830 ggcaaccaccgcgccggaaaat 54749851  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 13621427 - 13621502
Alignment:
Q  101 cacaaattgtttcgtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaa 176  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  13621427 cacaaattgtttcatgacaaaccaccaccataaacatactctccttcatattctctacaaaacccacaaagaaaaa 13621502  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 49380356 - 49380431
Alignment:
Q  101 cacaaattgtttcgtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaa 176  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||    
T  49380356 cacaaattgtttcatgacaaaccactaccataaacatactctccttcatattctctacaaaacccacaaagaaaaa 49380431  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 13621340 - 13621380
Alignment:
Q  41 ttctctatctcatcctaaaatttaattttggatcggagaca 81  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  13621340 ttctctatctcattctgaaatttaattttggatcggagaca 13621380  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 49380269 - 49380309
Alignment:
Q  41 ttctctatctcatcctaaaatttaattttggatcggagaca 81  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  49380269 ttctctatctcattctgaaatttaattttggatcggagaca 49380309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 22509323 - 22509392
Alignment:
Q  10 aacaatatacataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggaga 79  Q
    ||||| |||| |||||||| |||||||||  |||||||||||||| | ||||||| |||  |||||||||    
T  22509323 aacaaaatacttaatattcatcatctcttccttctctatctcatcattaaatttattttgtgatcggaga 22509392  T

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Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 11723441 - 11723516
Alignment:
Q  101 cacaaattgtttcgtgacaaaccaccaccataaacatactctccttcatattctctacaaattccacaaagaaaaa 176  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  11723441 cacaaattgtttcatgacaaaccaccaccataaacatactctccttcatattctctacaaaacccacaaagaaaaa 11723516  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 11723354 - 11723394
Alignment:
Q  41 ttctctatctcatcctaaaatttaattttggatcggagaca 81  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  11723354 ttctctatctcattctgaaatttaattttggatcggagaca 11723394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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