View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2674_low_8 (Length: 442)

Name: NF2674_low_8
Description: NF2674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2674_low_8
NF2674_low_8
[»] chr4 (19 HSPs)
chr4 (3-396)||(2533897-2534294)
chr4 (4-426)||(5035207-5035631)
chr4 (3-426)||(2525339-2525766)
chr4 (7-419)||(2490716-2491130)
chr4 (7-396)||(2518821-2519212)
chr4 (140-396)||(2486021-2486286)
chr4 (89-287)||(2467212-2467413)
chr4 (96-228)||(2547221-2547353)
chr4 (90-213)||(2621417-2621540)
chr4 (168-213)||(2361217-2361262)
chr4 (168-217)||(2381641-2381690)
chr4 (168-217)||(2391269-2391318)
chr4 (168-208)||(12124594-12124634)
chr4 (333-396)||(2467446-2467509)
chr4 (168-198)||(2482529-2482559)
chr4 (95-149)||(5106632-5106686)
chr4 (7-52)||(2477156-2477201)
chr4 (97-149)||(2367981-2368033)
chr4 (173-224)||(2393836-2393888)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 3 - 396
Target Start/End: Original strand, 2533897 - 2534294
Alignment:
Q  3 gagttaaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttc 102  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  2533897 gagttaaagcaatcctgcggagtttgggaagcgccaagaattgatcatcactatctatcgcacaattatggggacaaccagagtcggtaaggatgagttc 2533996  T
Q  103 ttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatcttcttg 202  Q
    ||| ||  ||||||||||||||||||| | |  ||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||    
T  2533997 ttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaatttttcatcttcttg 2534096  T
Q  203 gacaaagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagatttgggctagaaactcgc 302  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || ||||||||||||||    
T  2534097 gacaaagctcggaactcattttcaggaacactgtcagggtggtagagagtgagcgatttgaggtctaaagtggaagtagagagttcggctagaaactcgc 2534196  T
Q  303 c-gaggtcggcttctcggtc---ccccttaaggagagagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaaggga 396  Q
    | |||||||||||| ||| |   || |  |  | |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||    
T  2534197 cagaggtcggcttcacggacaaaccacccatcgggagagagtgatattgagtgatgtaatattagggaacctttcaaagaggcggttaaggaaaggga 2534294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 4 - 426
Target Start/End: Original strand, 5035207 - 5035631
Alignment:
Q  4 agttaaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttct 103  Q
    ||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  5035207 agttaaagcaatcctgcggagtttgggaagcgctaagaattgatcatcactatctatagcacaattatggggacaaccagtatcagtaaggattagttct 5035306  T
Q  104 tcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatcttcttgg 203  Q
    |||||  ||||||||||||||||||| | |   ||||||||||||||||||||||||||||||||||||| |||||| || ||| |||||||||||| ||    
T  5035307 tcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttgttgataaatctcatttgataacaagcgagagacgttaaacttttcatcttctcgg 5035406  T
Q  204 acaaagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagatttgggctagaaactcgcc 303  Q
    |||||||||| |||||||||||||| || ||| ||| |||||| |||||||| |||||||||| |||||||||||  |||||||  ||||||||||||||    
T  5035407 acaaagctcgcaactcattttcaggaaccctgacagcgtggtaaagagtgagcgatttgaggtttaaaggggaagcggagattttcgctagaaactcgcc 5035506  T
Q  304 gaggtcggcttctcggtccc--ccttaaggagagagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggagtgta 401  Q
    |||||  |||||||||  ||   | |  | || |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||     
T  5035507 gaggtgagcttctcgggaccaggcattggaagtgagagtgatattgagtgatgtaatattagggaacctttcaaagagacgactaaggaaagggattgtt 5035606  T
Q  402 gctttggagattttgaccaagaatc 426  Q
    || |  |||||||||||||||||||    
T  5035607 gcctcagagattttgaccaagaatc 5035631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 426
Target Start/End: Original strand, 2525339 - 2525766
Alignment:
Q  3 gagttaaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttc 102  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||  |||| |||    ||||||||||||||||||||||||||||    
T  2525339 gagttaaagcaatcctgcggagtttgggaagcgccaagaattgatcatcactatctatcacacagttactacgacaaccagtgtcggtaaggatgagttc 2525438  T
Q  103 ttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatcttcttg 202  Q
    ||||||   |||||||||||||||||||| |   |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  2525439 ttcgagtagagggaaacaatcagcaatgaagagcagatcattcttgttaataaatctcagttgataacaagtgagagatgtcaaatttttcattttcttg 2525538  T
Q  203 gacaaagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagatttgggctagaaactcgc 302  Q
    |||||| | || |||||||||| ||| ||  ||   ||||||||||||||||| |||||||||||||||||| |||| |||||||||  ||||||||| |    
T  2525539 gacaaaacacgcaactcattttgaggaaccttgggggggtggtagagagtgagcgatttgaggtctaaagggaaagtggagatttggtttagaaactcac 2525638  T
Q  303 cgaggtcggcttctcggtccccc---ttaag-gagagagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggagt 398  Q
     |||||| ||||||||| |||||   |  || |||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||      
T  2525639 tgaggtcagcttctcgggcccccgcatcgagagagagagagtgatattgagtgatgcaatgttagggaacctttcaaagagacgattaagaaaagggata 2525738  T
Q  399 gtagctttggagattttgaccaagaatc 426  Q
    || || ||||||||| ||||||||||||    
T  2525739 gttgcattggagattgtgaccaagaatc 2525766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 7 - 419
Target Start/End: Original strand, 2490716 - 2491130
Alignment:
Q  7 taaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttcttcg 106  Q
    |||||||||| ||||||||||||||||| |||  ||| |||||||| | ||||   || |||| ||||||  |||  ||||||| ||||||||||| |||    
T  2490716 taaagcaatcttgcggagtttgggaagcaccaataattgatcatcattgtctagcacataattttggggattaccgttgtcggttaggatgagttcgtcg 2490815  T
Q  107 agggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatcttcttggaca 206  Q
    ||  ||||||||||||||||||| |    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||  |||||    
T  2490816 agtaaagggaaacaatcagcaataaaaaagagatcattcttgttgataaacctcattcgataacaagtgagagatgtcaaatttttcatcgtcccggaca 2490915  T
Q  207 aagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagatttgggctagaaactcgccgag 306  Q
    ||||||| || |||||| | || || |||   || | |||||||| ||| ||||||||||| |||||| |||| ||||||||  | |||| ||||| |||    
T  2490916 aagctcgcaattcatttgcgggaaccctgattggctcgtagagagcgagcgatttgaggtccaaagggaaagtggagatttgtccaagaagctcgctgag 2491015  T
Q  307 gtcggcttctcggtcccccttaagg--agagagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggagtgtagct 404  Q
    |||  ||||| ||| ||  |   ||  |||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||     
T  2491016 gtcaacttctaggttcctgtatcgggaagagagggtgatattgattgatgtaatgttagggaacctttcaaagagacgattaaggaaagggattgttgca 2491115  T
Q  405 ttggagattttgacc 419  Q
    | ||||||| |||||    
T  2491116 tcggagattgtgacc 2491130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 7 - 396
Target Start/End: Original strand, 2518821 - 2519212
Alignment:
Q  7 taaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttcttcg 106  Q
    |||||||||| |||||||||| |||||||||| |||| ||  |||| |||||||  |  ||| || || | ||   || ||||||||||||||||||| |    
T  2518821 taaagcaatcttgcggagtttaggaagcgccaagaattgaaaatcaatatctatcaccaaatcattggtataaatggtatcggtaaggatgagttctttg 2518920  T
Q  107 agggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatcttcttggaca 206  Q
    ||  ||||||||||||||||||||| |  |||||||||||||| |||| || |||||| ||||||||||||| |||||||||||||||| || |  ||||    
T  2518921 agtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatatatttcatttaataacaagtgagatatgtcaaatttttcatgttttgagaca 2519020  T
Q  207 aagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagatttgggctagaaactcgccgag 306  Q
    ||||| | ||| | | || ||| |   ||  ||| |||||||||||||| ||| |||||||||||||| ||||  | |||| || ||||| ||||| |||    
T  2519021 aagcttgcaacccttctttaggaagggtgataggatggtagagagtgagcgatatgaggtctaaagggaaagtgcatattttggttagaagctcgctgag 2519120  T
Q  307 gtcggcttctcggtccc--ccttaaggagagagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaaggga 396  Q
    || | ||||||||  ||   |||  | |||||||||||| || ||||||||||  || |||||||| ||||||||||||| |||||||||||    
T  2519121 gttgtcttctcggagcctgtcttgggaagagagagtgatgttgagtgatgtaacgttggggaacctatcaaagagacgatgaaggaaaggga 2519212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 140 - 396
Target Start/End: Original strand, 2486021 - 2486286
Alignment:
Q  140 tcattcttgttgataaatctcatttgataacaagtga-------gagatgtcaaatttttcatcttcttggacaaagctcggaactcattttcaggcaca 232  Q
    |||||||||||||||||||| |||| ||||||| |||       |||||||||||||||||||||| |||||||||||||| |   ||||| |||| |      
T  2486021 tcattcttgttgataaatctaattttataacaattgactattgagagatgtcaaatttttcatctttttggacaaagctcgcagagcatttgcaggaagc 2486120  T
Q  233 ctgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagatttgggctagaaactcgccgaggtcggcttctcggtccc--ccttaag 330  Q
    |||   || | |||||||||||||||||||||||| |||||| |||| ||||| || |  |||| ||||||||||||   ||||| || ||   |||  |    
T  2486121 ctgatgggctcgtagagagtgagtgatttgaggtccaaagggaaagtggagatatgtgtaagaagctcgccgaggtcactttctctgttcctgtcttggg 2486220  T
Q  331 gagagagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaaggga 396  Q
     |||||||||||||||  | ||||||| |||||||||||  | ||||||||||| |||||||||||    
T  2486221 aagagagagtgatattgtgggatgtaacattagggaacccataaaagagacgatgaaggaaaggga 2486286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 287
Target Start/End: Original strand, 2467212 - 2467413
Alignment:
Q  89 gtaaggatgagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgata---aatctcatttgataacaagtgagagatgtca 185  Q
    ||||||||||| ||||||||  ||||||||||||||||||||| |   ||||| ||||||| ||||   ||    ||| | ||||||||||| |||||||    
T  2467212 gtaaggatgagctcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtca 2467311  T
Q  186 aatttttcatcttcttggacaaagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagat 285  Q
    ||||||||||||  ||||| |||||||| ||| ||| | |||| ||  |    ||||||||||||||||| ||||||||||| |||||| |||| |||||    
T  2467312 aatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtggagat 2467411  T
Q  286 tt 287  Q
    ||    
T  2467412 tt 2467413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 2547221 - 2547353
Alignment:
Q  96 tgagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcat 195  Q
    |||||||||| ||  ||||||||||||||||||||| |   | |||||||||| |||||||  | ||||   ||||| ||||||| ||||||||||||||    
T  2547221 tgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcat 2547320  T
Q  196 cttcttggacaaagctcggaactcattttcagg 228  Q
    ||| |  ||||||||||| ||| ||||| ||||    
T  2547321 cttttcagacaaagctcgcaacccatttgcagg 2547353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 2621540 - 2621417
Alignment:
Q  90 taaggatgagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatt 189  Q
    ||||| |||||||||||||  |||||||||||||||||| || |   ||||||||||||  |||     | ||| | |||||||||||||||||||||||    
T  2621540 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattaattcggtaacaagtgagagatgtcaaatt 2621441  T
Q  190 tttcatcttcttggacaaagctcg 213  Q
    |||||| || ||||| ||||||||    
T  2621440 tttcatatttttggagaaagctcg 2621417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 2361262 - 2361217
Alignment:
Q  168 aacaagtgagagatgtcaaatttttcatcttcttggacaaagctcg 213  Q
    |||||||||||||||||||||||||||| || ||||||||||||||    
T  2361262 aacaagtgagagatgtcaaatttttcatttttttggacaaagctcg 2361217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 2381690 - 2381641
Alignment:
Q  168 aacaagtgagagatgtcaaatttttcatcttcttggacaaagctcggaac 217  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  2381690 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaac 2381641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 2391318 - 2391269
Alignment:
Q  168 aacaagtgagagatgtcaaatttttcatcttcttggacaaagctcggaac 217  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  2391318 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaac 2391269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 12124594 - 12124634
Alignment:
Q  168 aacaagtgagagatgtcaaatttttcatcttcttggacaaa 208  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  12124594 aacaagtgagagaggtcaaatttttcatctttttggacaaa 12124634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 2467446 - 2467509
Alignment:
Q  333 gagagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaaggga 396  Q
    ||||||||||| | || |||| | ||||| |||||||||||||||||||||| ||| |||||||    
T  2467446 gagagagtgatgtcaattgatctgatattggggaacctttcaaagagacgatgaagtaaaggga 2467509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 198
Target Start/End: Original strand, 2482529 - 2482559
Alignment:
Q  168 aacaagtgagagatgtcaaatttttcatctt 198  Q
    |||||||||||||||||||||||||||||||    
T  2482529 aacaagtgagagatgtcaaatttttcatctt 2482559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 5106686 - 5106632
Alignment:
Q  95 atgagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgt 149  Q
    ||||||||||||||  ||||||||||||||||||||| |  ||||||| ||||||    
T  5106686 atgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 5106632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 2477156 - 2477201
Alignment:
Q  7 taaagcaatcctgcggagtttgggaagcgccaggaatcgatcatca 52  Q
    |||||||||| |||||||||||||||||||||  ||| ||||||||    
T  2477156 taaagcaatcttgcggagtttgggaagcgccaacaattgatcatca 2477201  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 2368033 - 2367981
Alignment:
Q  97 gagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgt 149  Q
    ||||||||||||  ||||||||||||||||||||| |  ||||||| ||||||    
T  2368033 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 2367981  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 2393888 - 2393836
Alignment:
Q  173 gtgagagatgtcaaattttt-catcttcttggacaaagctcggaactcatttt 224  Q
    |||||||||||||||||||| |||||| | |||||||||||| ||| ||||||    
T  2393888 gtgagagatgtcaaattttttcatcttttgggacaaagctcgcaacccatttt 2393836  T

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