View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2674_low_9 (Length: 421)
Name: NF2674_low_9
Description: NF2674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2674_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 27408921 - 27409286
Alignment:
| Q |
11 |
taattcttaagattactttccagtatttaatatagtgagtatgtaggtgcctgttagctgaatgatttccaagtccttgttaacagtcgaacaacgatgc |
110 |
Q |
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| T |
27408921 |
taattcttaagattattttccagtatttaatatagtgagtatgtaggtgcctgttagctgaatgattttcaggtccttgttaacagtcgaacaacgatgc |
27409020 |
T |
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| Q |
111 |
ttcttgaataatcagatttcagtgatgaatata----------tgagcttatcctacactcttattggacttatcatacactaacgaactgttgtgtttt |
200 |
Q |
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| T |
27409021 |
ttcttgaataatcaaatttcagtggtgaatatatgagcttatatgagcttatcctacactcttattggacttatcatacactaacgaactgttgtgtttt |
27409120 |
T |
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| Q |
201 |
attgaatttcactaaattaggaattcaacttacacacaatgcacacctctctacaatgatataaaatacaggtccttgatacattgaaaaacatttgcgc |
300 |
Q |
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| T |
27409121 |
attgaatttcactaaattaggaagtcaacttaaacacaatgcacacctctctacaatgatataaaatataggtccttgatacattgaaaaacatttgcgc |
27409220 |
T |
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| Q |
301 |
atacatgcattggctacacattctatttgtatagcagtgaacatgcattacctattcttatgtttc |
366 |
Q |
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| T |
27409221 |
atacatgcattggctacacattctatttgtatagcagtgaacatgcattacctattcttatgtttc |
27409286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 29915364 - 29915446
Alignment:
| Q |
11 |
taattcttaagattactttccagtatttaatatagtgagtatgtaggtgcctgttagctgaatgatttccaagtccttgttaa |
93 |
Q |
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| T |
29915364 |
taattcttaagattattttacagtatttaatatagtgagtatgtaggtgcctgttagctgaatgatttccagatccttgttaa |
29915446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 3604927 - 3604976
Alignment:
| Q |
69 |
tgaatgatttccaagtccttgttaacagtcgaacaacgatgcttcttgaa |
118 |
Q |
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| T |
3604927 |
tgaatgatttcaaagtccttgttaacattcgaacatcgattcttattgaa |
3604976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 6549199 - 6549151
Alignment:
| Q |
352 |
ctattcttatgtttcatttttctaatgtccaattttcatctactcagtt |
400 |
Q |
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| T |
6549199 |
ctatccttgtgtttcatttttctaatttccaattttgatctacgcagtt |
6549151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 6785635 - 6785587
Alignment:
| Q |
115 |
tgaataatcagatttcagtgatgaatatatgagcttatcctacactctt |
163 |
Q |
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| T |
6785635 |
tgaataataagatcgcaatgattaatatatgagcttatcctacactctt |
6785587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 18460087 - 18460134
Alignment:
| Q |
67 |
gctgaatgatttccaagtccttgttaacagtcgaacaacgatgcttctt |
115 |
Q |
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| T |
18460087 |
gctgaatgatttctaagtc-ttgttaactgtcggacaacgatgcttctt |
18460134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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