View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2675_high_12 (Length: 316)

Name: NF2675_high_12
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2675_high_12
NF2675_high_12
[»] chr3 (35 HSPs)
chr3 (14-302)||(10376111-10376399)
chr3 (14-302)||(10088305-10088593)
chr3 (14-302)||(10195188-10195476)
chr3 (14-302)||(10434310-10434598)
chr3 (28-302)||(10580116-10580390)
chr3 (16-298)||(10076785-10077067)
chr3 (14-282)||(8860821-8861089)
chr3 (14-298)||(9838380-9838664)
chr3 (14-298)||(9849258-9849542)
chr3 (26-282)||(11149132-11149388)
chr3 (14-282)||(11160283-11160551)
chr3 (14-282)||(10888841-10889109)
chr3 (26-282)||(11131304-11131560)
chr3 (14-302)||(11768749-11769037)
chr3 (37-302)||(10364087-10364352)
chr3 (26-282)||(13332439-13332695)
chr3 (149-300)||(10126433-10126584)
chr3 (49-299)||(13289183-13289433)
chr3 (149-300)||(10260203-10260354)
chr3 (26-299)||(13160498-13160771)
chr3 (149-300)||(10031508-10031659)
chr3 (149-300)||(10183744-10183895)
chr3 (190-298)||(10085627-10085735)
chr3 (190-298)||(10192547-10192655)
chr3 (26-282)||(13170566-13170822)
chr3 (149-300)||(10663031-10663182)
chr3 (191-248)||(10541543-10541600)
chr3 (49-282)||(13343624-13343857)
chr3 (191-248)||(10517057-10517114)
chr3 (191-248)||(11782422-11782479)
chr3 (190-248)||(10500146-10500204)
chr3 (191-248)||(10526928-10526985)
chr3 (233-281)||(4080909-4080957)
chr3 (200-281)||(4061268-4061349)
chr3 (233-281)||(4129250-4129298)
[»] chr2 (1 HSPs)
chr2 (14-302)||(26906412-26906700)
[»] scaffold0083 (1 HSPs)
scaffold0083 (37-302)||(50097-50359)
[»] chr8 (2 HSPs)
chr8 (14-302)||(44957975-44958263)
chr8 (149-299)||(11484535-11484685)
[»] chr6 (1 HSPs)
chr6 (58-282)||(31680043-31680273)
[»] scaffold0002 (2 HSPs)
scaffold0002 (26-299)||(146217-146490)
scaffold0002 (26-282)||(136166-136422)
[»] chr4 (1 HSPs)
chr4 (206-248)||(17853378-17853420)
[»] chr1 (1 HSPs)
chr1 (200-281)||(13932677-13932758)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 10376111 - 10376399
Alignment:
Q  14 atatctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10376111 atatctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagt 10376210  T
Q  114 tcaacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10376211 tcaacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagat 10376310  T
Q  214 agcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagagtga 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | ||||||||    
T  10376311 agcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatccagcacaacttgaagagtga 10376399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 10088593 - 10088305
Alignment:
Q  14 atatctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagt 113  Q
    |||||||||| ||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||    
T  10088593 atatctttattctgtgcaaacaattgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagt 10088494  T
Q  114 tcaacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagat 213  Q
    ||| |||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||     
T  10088493 tcatcacctgataacttttgttttgagcttgtgcattctccaccttgcatcgaagggaatcataactgatttcgctgagcaagtcctcagcatcaaagac 10088394  T
Q  214 agcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagagtga 302  Q
    ||||||||||||||||||||||||| | ||||||| ||||||| |||||||||||||||| |||||||| || ||||| | ||||||||    
T  10088393 agcatctttcaagtcatcaagccatagtttgacagcaggattgttgatctgcttctcctccgcatcatccagcacaacttgaagagtga 10088305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 10195476 - 10195188
Alignment:
Q  14 atatctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagt 113  Q
    |||||||||| ||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||    
T  10195476 atatctttattctgtgcaaacaattgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagt 10195377  T
Q  114 tcaacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagat 213  Q
    ||| |||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||| ||||||||||||||||||||     
T  10195376 tcatcacctgataacttttgttttgagcttgtgcattctccaccttgcatcgaagggaatcataactgatttcgctgaacaagtcctcagcatcaaagac 10195277  T
Q  214 agcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagagtga 302  Q
    ||||||||||||||||||||||||| | ||||||| ||||||| |||||||||||||||| |||||||| || ||||| | ||||||||    
T  10195276 agcatctttcaagtcatcaagccatagtttgacagcaggattgttgatctgcttctcctccgcatcatccagcacaacttgaagagtga 10195188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 10434310 - 10434598
Alignment:
Q  14 atatctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagt 113  Q
    |||||||||| ||||||||| | ||||| ||| |||||||||| ||||||||||||||||||||||||||||||  | ||||||||||| ||||||||||    
T  10434310 atatctttattctgtgcaaaaagttgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagt 10434409  T
Q  114 tcaacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagat 213  Q
    |||||||||||||||||||||||||||| | || ||||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||||||     
T  10434410 tcaacacctgattagttttgttttgagcatgtgtattctccaccttggatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagac 10434509  T
Q  214 agcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagagtga 302  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||||||||||||| || ||||| | ||||||||    
T  10434510 agcatctttcaagtcatcaagccattgtttgacagcaggtttgttgatctgcttctcctctgcatcatccagcacaacttgaagagtga 10434598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 28 - 302
Target Start/End: Complemental strand, 10580390 - 10580116
Alignment:
Q  28 tgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgatta 127  Q
    |||||| ||||||||| | |||||||||| |||||| || |||||||||||||| |||||| | |||||||||||||||||||||||| |||||||||||    
T  10580390 tgcaaacaattgcaggttttcacacatgatcttcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgatta 10580291  T
Q  128 gttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagt 227  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10580290 gttttgttttgagcttgtgtattctccaccttgcatcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaatgatagcatctttcaagt 10580191  T
Q  228 catcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagagtga 302  Q
    ||||||||||| | ||||||| ||||||  ||||||||||||||||||||||||| || ||||| | ||||||||    
T  10580190 catcaagccatagtttgacagcaggattattgatctgcttctcctctgcatcatccagcacaacttgaagagtga 10580116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 10077067 - 10076785
Alignment:
Q  16 atctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttc 115  Q
    |||||||| ||||||||| |||||||  || |||||||||| |||| ||||||||||||||||| |||||||| | ||||||||||| ||||||||||||    
T  10077067 atctttattctgtgcaaacaattgcaacctttcacacatgatcttcgtttgagaattgatctctttgtagaagctattaaaaggagatgaaaggaagttc 10076968  T
Q  116 aacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatag 215  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||| ||    
T  10076967 aacacctgattagttttgttttgagcttgtgcattctccaccttgcatcgcagtgaatcgtaactgatttcgttgagcaagtcctcggcatcaaagacag 10076868  T
Q  216 catctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatctagtacaacctcaaga 298  Q
    |||||||||||| ||||||||| ||  |||||   |||||| |||||||||||||||||||||||||||||||| ||| ||||    
T  10076867 catctttcaagttatcaagccactgtctgacatggggattgctgatctgcttctcctctgcatcatctagtacagcctgaaga 10076785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 8861089 - 8860821
Alignment:
Q  14 atatctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagt 113  Q
    ||||||||||  ||||| || | ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8861089 atatctttatgttgtgcgaaaatttgcaagctatcacacatgatcttcatttgggaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagt 8860990  T
Q  114 tcaacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagat 213  Q
    || ||||||||||||||||||||  ||||| || || ||||||||||||||| |  ||||||||||||||||  |||||||| ||||||||||||||||     
T  8860989 tccacacctgattagttttgtttgcagcttgtgtatcctccaccttgcatcgtaatgaatcataactgatttggttgagcaaatcctcagcatcaaagag 8860890  T
Q  214 agcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatc 282  Q
    ||||||||||||||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||    
T  8860889 agcatctttcaagtcatcaagccattgtttgacagcacgattgttgatctgcttctcctctgcatcatc 8860821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 298
Target Start/End: Complemental strand, 9838664 - 9838380
Alignment:
Q  14 atatctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagt 113  Q
    |||||||||| ||||||| | | ||||| |||||||||||||| |||||| || |||||||||||| |||| ||  | ||||||||||||||||||||||    
T  9838664 atatctttattctgtgcataaagttgcaagctatcacacatgatcttcatctgggaattgatctctttgtaaaaactattaaaaggagaagaaaggaagt 9838565  T
Q  114 tcaacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagat 213  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||     
T  9838564 tccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagac 9838465  T
Q  214 agcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatctagtacaacctcaaga 298  Q
    | |||||||||||| ||||||||| || ||||||   |||||| |||||||||||||||||||||||||||| ||| ||| ||||    
T  9838464 aacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcctgaaga 9838380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 298
Target Start/End: Complemental strand, 9849542 - 9849258
Alignment:
Q  14 atatctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagt 113  Q
    |||||||||| ||||||| | | ||||| |||||||||||||| |||||| || |||||||||||| |||| ||  | ||||||||||||||||||||||    
T  9849542 atatctttattctgtgcataaagttgcaagctatcacacatgatcttcatctgggaattgatctctttgtaaaaactattaaaaggagaagaaaggaagt 9849443  T
Q  114 tcaacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagat 213  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||     
T  9849442 tccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagac 9849343  T
Q  214 agcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatctagtacaacctcaaga 298  Q
    | |||||||||||| ||||||||| || ||||||   |||||| |||||||||||||||||||||||||||| ||| ||| ||||    
T  9849342 aacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcctgaaga 9849258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 26 - 282
Target Start/End: Original strand, 11149132 - 11149388
Alignment:
Q  26 tgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgat 125  Q
    |||||||| | ||||||| | |||||||||  ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||     
T  11149132 tgtgcaaaaatttgcaggttgtcacacatggtcttcatttgggaattgatctctctgtagatggtgttaaaaggagaagaaaggaagctccacacctgac 11149231  T
Q  126 tagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 225  Q
    |||||||||||   | || || ||||||||||||||||||||| || |||||||| |||| ||| ||||| ||||| |||||||||||||||||||||||    
T  11149232 tagttttgtttgtggattgtgtattctccaccttgcatcgcagtgattcataactaatttgattcagcaaatcctcggcatcaaagatagcatctttcaa 11149331  T
Q  226 gtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatc 282  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||||| || ||||||||    
T  11149332 gtcatcaagccattgtttgacagcaggattgttgatctgcttctcatcagcatcatc 11149388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 11160283 - 11160551
Alignment:
Q  14 atatctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagt 113  Q
    ||||||||||  ||||| || | ||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||     
T  11160283 atatctttatgttgtgcgaaaagttgcaagctatcacacatgatcttcatttgggaattgatctctctatagaaggtgttaaaaggagaagaaaggaagc 11160382  T
Q  114 tcaacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagat 213  Q
    || |||||||| |||||||||||   | || || ||||||||||||||||||||| || |||||||| |||| ||| ||||| ||||| ||||||||||     
T  11160383 tccacacctgactagttttgtttgtggattgtgtattctccaccttgcatcgcagtgattcataactaatttgattcagcaaatcctcggcatcaaagac 11160482  T
Q  214 agcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatc 282  Q
    ||||||||||||||||||||||||||| ||||||| | | ||| |||||| ||||||||||||||||||    
T  11160483 agcatctttcaagtcatcaagccattgtttgacagcacggttgttgatctacttctcctctgcatcatc 11160551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 10889109 - 10888841
Alignment:
Q  14 atatctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagt 113  Q
    ||||||||||  |||||||| | ||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  10889109 atatctttatgttgtgcaaaaagttgcaagctattacacatgatcttcatttgggaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagc 10889010  T
Q  114 tcaacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagat 213  Q
    || |||||||| |||||||||||   | || || ||||||||||||||||||||  || |||||||| ||||  || ||||| ||||| ||||||||||     
T  10889009 tccacacctgactagttttgtttgtggattgtgtattctccaccttgcatcgcaatgattcataactaatttggttcagcaaatcctccgcatcaaagac 10888910  T
Q  214 agcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatc 282  Q
    ||||||||||||||||||||||||||| ||||||| | | ||| |||||||||||||||| ||||||||    
T  10888909 agcatctttcaagtcatcaagccattgtttgacagcacggttgttgatctgcttctcctcagcatcatc 10888841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 26 - 282
Target Start/End: Original strand, 11131304 - 11131560
Alignment:
Q  26 tgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgat 125  Q
    |||||||| | ||||||| | |||||||||  ||| ||||| |||||||||||||  |||| | | |||||||||||||||||||||||| | |||||||    
T  11131304 tgtgcaaaaatttgcaggttgtcacacatggtcttaatttgggaattgatctctccatagatgtttttaaaaggagaagaaaggaagttccagacctgat 11131403  T
Q  126 tagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 225  Q
    |||||||||||  ||||| || ||||||||||||||||||||| || |||||||| |||| ||| ||||| ||||| |||||||||||||||||||||||    
T  11131404 tagttttgtttgcagcttgtgtattctccaccttgcatcgcagtgactcataactaatttgattcagcaaatcctccgcatcaaagatagcatctttcaa 11131503  T
Q  226 gtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatc 282  Q
    |||||||| |||||  ||||||| | | ||| |||||||||||||||| ||||||||    
T  11131504 gtcatcaacccattttttgacagcacggttgttgatctgcttctcctcagcatcatc 11131560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 11769037 - 11768749
Alignment:
Q  14 atatctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagt 113  Q
    ||||||||||  |||||||| | ||||||||| |||||||||| |||||| || |||||||||||||  |||| | | |||||||| || ||||| ||||    
T  11769037 atatctttattttgtgcaaaaagttgcaggctttcacacatgatcttcatatgggaattgatctctccatagatgtttttaaaaggggatgaaagtaagt 11768938  T
Q  114 tcaacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagat 213  Q
    || ||||||||||||||||||||  ||||| |   ||||||| ||||||||| ||||| |||||||| |||| || ||| || |||||||||||||||||    
T  11768937 tccacacctgattagttttgtttctagcttgtttcttctccatcttgcatcggagggagtcataacttatttgatcgagtaaatcctcagcatcaaagat 11768838  T
Q  214 agcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagagtga 302  Q
    ||| ||||||||||||||||||||||| ||||||| | ||||| | |||||||||||||| |||||||| |||||| ||| ||| ||||    
T  11768837 agcgtctttcaagtcatcaagccattgtttgacagcaagattgttcatctgcttctcctccgcatcatccagtacagcctgaagtgtga 11768749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 37 - 302
Target Start/End: Original strand, 10364087 - 10364352
Alignment:
Q  37 ttgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgattagttttgttt 136  Q
    ||||||||| |||||||||| |||||| || |||||||||||||| |||||| | || ||||||||  ||||||||||| ||||||||||| || |||||    
T  10364087 ttgcaggctttcacacatgatcttcatctgggaattgatctctctatagaagctattgaaaggagataaaaggaagttccacacctgattacttctgttt 10364186  T
Q  137 tgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagcc 236  Q
      ||||| |  | ||||||   |||||||||||||||||||||||||||| |  ||||| ||||| |||||||||| ||||||||||||| |||||||||    
T  10364187 ccagcttgtttactctccattgtgcatcgcagggaatcataactgatttcgtgaagcaaatcctcggcatcaaagacagcatctttcaagccatcaagcc 10364286  T
Q  237 attgcttgacagaaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagagtga 302  Q
    |||| ||||||| ||||||| ||||||||||||| ||||| ||||| || ||||| | ||||||||    
T  10364287 attgtttgacagcaggattgttgatctgcttctcttctgcgtcatccagcacaacttgaagagtga 10364352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 282
Target Start/End: Complemental strand, 13332695 - 13332439
Alignment:
Q  26 tgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgat 125  Q
    |||||||| | |||||| || | |||||| | ||||||||| |||||||||||||  ||||   | ||||||||||| |||| || |||| | |||||||    
T  13332695 tgtgcaaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggagacgaaaagaggttccaaacctgat 13332596  T
Q  126 tagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 225  Q
    ||||  |||||| ||||| |   ||||||||||| ||||||||||| || ||| ||||||  || ||||| |||||||||||| |||| ||||||||||     
T  13332595 tagtcatgttttcagcttgtttcttctccaccttacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttcag 13332496  T
Q  226 gtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatc 282  Q
     | ||| | |||||| ||||||| ||  ||| |||| |||||||  |||||||||||    
T  13332495 ctgatccaaccattgtttgacagcagtgttggtgatttgcttctgttctgcatcatc 13332439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 300
Target Start/End: Complemental strand, 10126584 - 10126433
Alignment:
Q  149 ttctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||||| ||||||||| |||| ||  || ||||||| ||||||||| |||||||||||| |||| |||||||| ||   ||| |||||||| ||||       
T  10126584 ttctccagcttgcatcgtagggcattgtagctgatttgattgagcaaatcctcagcatcatagattgcatcttttaaccgatccagccattgtttgattc 10126485  T
Q  249 aaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagagt 300  Q
      || |||| ||||||||||||||||||||||||||||||||||||||||||    
T  10126484 tgggtttgaggatctgcttctcctctgcatcatctagtacaacctcaagagt 10126433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 299
Target Start/End: Complemental strand, 13289433 - 13289183
Alignment:
Q  49 acacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgattagttttgttttgagcttttgca 148  Q
    |||||| | ||||||||| |||||||||||||  ||||  || ||||||||||| |||| || |||| | |||||||||||  |||||| ||||| |       
T  13289433 acacataatcttcatttgtgaattgatctctccatagagagttttaaaaggagatgaaaagaggttccaaacctgattagtcatgttttcagcttgtttc 13289334  T
Q  149 ttctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||||||||| ||||||||||| || ||| ||||||  || ||||| |||||||||||| |||| ||||||||||  | ||| | |||||| |||||||    
T  13289333 ttctccaccttacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttcagctgatccaaccattgtttgacag 13289234  T
Q  249 aaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagag 299  Q
     ||  ||| |||| ||||||   ||||||||||| || || |||| |||||    
T  13289233 cagtgttggtgatttgcttcagttctgcatcatccagcaccacctgaagag 13289183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 300
Target Start/End: Complemental strand, 10260354 - 10260203
Alignment:
Q  149 ttctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||||| ||||||||| |||| ||  || ||||||| ||||||||| |||||||||||| |||| |||||||| ||   ||| | |||||| ||||       
T  10260354 ttctccagcttgcatcgtagggcattgtagctgattttattgagcaaatcctcagcatcatagattgcatcttttaaccgatccaaccattgtttgattc 10260255  T
Q  249 aaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagagt 300  Q
      || |||| ||||||||||||||||||||||||||||||||||||||||||    
T  10260254 tgggtttgaggatctgcttctcctctgcatcatctagtacaacctcaagagt 10260203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 26 - 299
Target Start/End: Complemental strand, 13160771 - 13160498
Alignment:
Q  26 tgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgat 125  Q
    |||||||| | |||||| || | |||||| | ||||||||| |||||||||||||  ||||   | ||||||||||| |||| || |||| | |||||||    
T  13160771 tgtgcaaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggagatgaaaagaggttccaaacctgat 13160672  T
Q  126 tagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 225  Q
    ||||  |||||| ||||| |   ||||||||| | ||||||||||| || ||| ||||||  || ||||| |||||||||||| |||| ||||||||||     
T  13160671 tagtcatgttttcagcttgtttcttctccaccgtacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttcag 13160572  T
Q  226 gtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagag 299  Q
     | ||| | |||||| ||||||| ||  ||| |||| ||||||   ||||||||||| || || |||| |||||    
T  13160571 ttgatccatccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccacctgaagag 13160498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 149 - 300
Target Start/End: Complemental strand, 10031659 - 10031508
Alignment:
Q  149 ttctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||||| ||||||||| | || ||  || ||||||| ||||||||| |||||||||||| |||| |||||||| ||   ||| | |||||| ||||       
T  10031659 ttctccagcttgcatcgtatggcattgtagctgatttgattgagcaaatcctcagcatcatagattgcatcttttaaccgatccaaccattgtttgattc 10031560  T
Q  249 aaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagagt 300  Q
      || |||| ||||||||||||||||||||||||||||||||||||||||||    
T  10031559 tgggtttgaggatctgcttctcctctgcatcatctagtacaacctcaagagt 10031508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 149 - 300
Target Start/End: Complemental strand, 10183895 - 10183744
Alignment:
Q  149 ttctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||||| ||||||||| |||| ||  || ||||||| ||||| ||| |||||||||||| |||| |||||||| ||   ||| | |||||| ||||       
T  10183895 ttctccatcttgcatcgtagggcattgtagctgatttgattgaacaaatcctcagcatcatagattgcatcttttaaccgatccaaccattgtttgattc 10183796  T
Q  249 aaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagagt 300  Q
      || |||| ||||||||||||||||||||||||||||||||||||||||||    
T  10183795 tgggtttgaggatctgcttctcctctgcatcatctagtacaacctcaagagt 10183744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 298
Target Start/End: Complemental strand, 10085735 - 10085627
Alignment:
Q  190 gagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatctagtaca 289  Q
    |||||| || ||||||||||||| | |||||||||||| ||||||||| || ||||||   |||||  ||||||||||||||| ||||||||||||||||    
T  10085735 gagcaaatcttcagcatcaaagaaaacatctttcaagttatcaagccactgtttgacatggggattactgatctgcttctcctttgcatcatctagtaca 10085636  T
Q  290 acctcaaga 298  Q
     ||| ||||    
T  10085635 gcctgaaga 10085627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 298
Target Start/End: Complemental strand, 10192655 - 10192547
Alignment:
Q  190 gagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatctagtaca 289  Q
    |||||| || ||||||||||||| | |||||||||||| ||||||||| || ||||||   |||||  ||||||||||||||| ||||||||||||||||    
T  10192655 gagcaaatcttcagcatcaaagaaaacatctttcaagttatcaagccactgtttgacatggggattactgatctgcttctcctttgcatcatctagtaca 10192556  T
Q  290 acctcaaga 298  Q
     ||| ||||    
T  10192555 gcctgaaga 10192547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 282
Target Start/End: Complemental strand, 13170822 - 13170566
Alignment:
Q  26 tgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgat 125  Q
    |||||||| | |||||| || | |||||| | ||||||||| |||||||||||||  ||||   | ||||||||| | |||| || |||| | |||||||    
T  13170822 tgtgcaaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggacatgaaaagaggttccaaacctgat 13170723  T
Q  126 tagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 225  Q
    ||||  |||||| || || |   ||||||||||| ||||| ||||| || ||| ||||||  || ||||| |||||||||||| |||| ||||||||||     
T  13170722 tagtcatgttttcagattgtatcttctccaccttacatcggagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttcag 13170623  T
Q  226 gtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatc 282  Q
     | ||| | |||||| ||||||| ||  ||| |||| |||||||  |||||||||||    
T  13170622 ttgatccatccattgtttgacagcagtgttggtgatttgcttctgttctgcatcatc 13170566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 300
Target Start/End: Complemental strand, 10663182 - 10663031
Alignment:
Q  149 ttctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||||| ||||||||| |||| ||  || ||||||| |||||| || ||||| |||||| |||| |||||||| ||   ||| | |||||| ||||       
T  10663182 ttctccagcttgcatcgtagggcattgtagctgatttgattgagtaaatcctctgcatcatagattgcatcttttaaccgatccaaccattgtttgattc 10663083  T
Q  249 aaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagagt 300  Q
      || |||| ||||||||||||||||||||||||||||||||||||||||||    
T  10663082 tgggtttgaggatctgcttctcctctgcatcatctagtacaacctcaagagt 10663031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 10541600 - 10541543
Alignment:
Q  191 agcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10541600 agcaaatcttcagcatcaaagattgcatctttcaagtcatcaagccattgcttgacag 10541543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 49 - 282
Target Start/End: Complemental strand, 13343857 - 13343624
Alignment:
Q  49 acacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgattagttttgttttgagcttttgca 148  Q
    |||||| | ||||||||| |||||||||||||  ||||   | ||||| ||||| |||| || |||| | |||||||||||  |||||| ||||| |       
T  13343857 acacataatcttcatttgtgaattgatctctccatagagatttttaaacggagacgaaaagaggttccaaacctgattagtcatgttttcagcttgtttc 13343758  T
Q  149 ttctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||||||| | ||||||||||| || ||  ||||||  || ||||| |||||||||||| |||| ||||||||||  | ||| | |||||| |||||||    
T  13343757 ttctccaccgtacatcgcagggagtcgtagttgatttggttaagcaaatcctcagcatcatagattgcatctttcagctgatccaaccattgtttgacag 13343658  T
Q  249 aaggattgatgatctgcttctcctctgcatcatc 282  Q
     ||  ||| |||| ||||| |  |||||||||||    
T  13343657 cagtgttggtgatttgcttatgttctgcatcatc 13343624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 10517114 - 10517057
Alignment:
Q  191 agcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||| || |||| ||||||||| |||||||||||||||||||||||||| |||||||    
T  10517114 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacag 10517057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 11782422 - 11782479
Alignment:
Q  191 agcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||| || ||||||||||| || |||||||||||||||||||||||||| |||||||    
T  11782422 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacag 11782479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 10500204 - 10500146
Alignment:
Q  190 gagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    |||||| || |||||||||||||| |  ||||||||||||||||||||||| |||||||    
T  10500204 gagcaaatcttcagcatcaaagattgtgtctttcaagtcatcaagccattgtttgacag 10500146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 10526985 - 10526928
Alignment:
Q  191 agcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||| || ||||||||||| || |||||||||||||||| ||||||||| |||||||    
T  10526985 agcaaatcttcagcatcaaatattgcatctttcaagtcatgaagccattgtttgacag 10526928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 4080909 - 4080957
Alignment:
Q  233 agccattgcttgacagaaggattgatgatctgcttctcctctgcatcat 281  Q
    |||||||||||||||| ||| ||| |||||||||||||||| |||||||    
T  4080909 agccattgcttgacagcagggttggtgatctgcttctcctcagcatcat 4080957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 281
Target Start/End: Original strand, 4061268 - 4061349
Alignment:
Q  200 tcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcat 281  Q
    ||||| ||||||| |||||||  |||   ||| ||||||| |||||||| ||| ||| |||||||||||||||| |||||||    
T  4061268 tcagcttcaaagacagcatctcgcaacagatccagccatttcttgacagcagggttggtgatctgcttctcctcagcatcat 4061349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 4129298 - 4129250
Alignment:
Q  233 agccattgcttgacagaaggattgatgatctgcttctcctctgcatcat 281  Q
    |||||||||||||||| ||| ||| ||||||| |||||||| |||||||    
T  4129298 agccattgcttgacagcagggttggtgatctgtttctcctcagcatcat 4129250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 26906700 - 26906412
Alignment:
Q  14 atatctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagt 113  Q
    ||||||||||  |||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||    
T  26906700 atatctttatgttgtgcaaacaattgcaggctttcacacattatcttcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagt 26906601  T
Q  114 tcaacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagat 213  Q
    |||||||||||||||||||||||||||||| || |||||| || ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||    
T  26906600 tcaacacctgattagttttgttttgagcttgtgtattctcgactttgcatcgcagggaatcataactaatttcgttgagcaagtcctcaacatcaaagat 26906501  T
Q  214 agcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagagtga 302  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||||||||| || |||||||  |||||||    
T  26906500 agcatctttcaagtcatcaagccattgtttgacagcaggattgttgatctgtttctcctctgcatcatccagcacaacctgcagagtga 26906412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 37 - 302
Target Start/End: Original strand, 50097 - 50359
Alignment:
Q  37 ttgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgattagttttgttt 136  Q
    ||||||||| |||||||||| |||||| || |||||||||||||  |||    | ||||||| ||| |||| |||||||| |||||||| | ||||| ||    
T  50097 ttgcaggctttcacacatgatcttcatctgggaattgatctctccatagt---ttttaaaagaagatgaaaagaagttcatcacctgataaattttgctt 50193  T
Q  137 tgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagcc 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||    
T  50194 tgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcgctgagcaagtcctcagcatcaaagacagcatctttcaagtcatcaagcc 50293  T
Q  237 attgcttgacagaaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagagtga 302  Q
    || | ||||||| ||||||| |||||||||||||||| |||||||| || ||||| | ||||||||    
T  50294 atagtttgacagcaggattgttgatctgcttctcctcagcatcatccagcacaacttgaagagtga 50359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 44957975 - 44958263
Alignment:
Q  14 atatctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagt 113  Q
    |||||||||| ||||||||| | |||||||   |||||||| | |||||||||||||||||||||||  |||||| | ||||||||||| ||||||||||    
T  44957975 atatctttatgctgtgcaaaaagttgcagggattcacacataatcttcatttgagaattgatctctccatagaagtttttaaaaggagatgaaaggaagt 44958074  T
Q  114 tcaacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagat 213  Q
    || | |||||||||||||||||   | ||| || ||||||||| ||||| |||||||||||||| || ||||  |||||||| ||||| |||||||| ||    
T  44958075 tccagacctgattagttttgttggcaacttgtgtattctccactttgcaacgcagggaatcatagctaatttggttgagcaaatcctcggcatcaaatat 44958174  T
Q  214 agcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagagtga 302  Q
     | || ||||||||||||||||||||| ||||||| | | ||| |||| |||||||||||||||||||| || ||||||| ||||||||    
T  44958175 tgtatttttcaagtcatcaagccattgtttgacagtaaggttggtgatttgcttctcctctgcatcatcaagcacaacctgaagagtga 44958263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 299
Target Start/End: Complemental strand, 11484685 - 11484535
Alignment:
Q  149 ttctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||| ||||||||||||| || |||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||   |||||||||||| ||||       
T  11484685 ttctctaccttgcatcgcaaggcatcatagctgatttcattaagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttgattt 11484586  T
Q  249 aaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagag 299  Q
      || |  | |||||||||||| ||||||||||| || |||||||||||||    
T  11484585 tgggttgaaggatctgcttctcttctgcatcatcaagcacaacctcaagag 11484535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 58 - 282
Target Start/End: Original strand, 31680043 - 31680273
Alignment:
Q  58 cttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgattagttttgttttgagcttttgcatt------c 151  Q
    ||||||||| |||||||||||||  || ||| | | ||||||||| |||||||| ||| | ||||||  |||  |||||| ||||| || |||      |    
T  31680043 cttcatttgggaattgatctctccatacaagttttgaaaaggagatgaaaggaaattccaaacctgaccagtgatgttttcagcttgtgtattactattc 31680142  T
Q  152 tccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacagaag 251  Q
    |||||||||| ||  ||| ||||||||||||| |  |||||||| |||||||||||| | || ||||||||||| |||||||||||||| ||||||| |     
T  31680143 tccaccttgcttctaaggcaatcataactgatctggttgagcaaatcctcagcatcatatattgcatctttcaactcatcaagccattgtttgacaggaa 31680242  T
Q  252 gattgatgatctgcttctcctctgcatcatc 282  Q
    ||||| |||||||||||| ||| ||||||||    
T  31680243 gattgttgatctgcttcttctcagcatcatc 31680273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 26 - 299
Target Start/End: Original strand, 146217 - 146490
Alignment:
Q  26 tgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgat 125  Q
    |||||||| | |||||| || | |||||| | ||||||||| |||||||||||||  ||||   | ||||||||||| |||| || |||| | |||||||    
T  146217 tgtgcaaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggagatgaaaagaggttccaaacctgat 146316  T
Q  126 tagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 225  Q
    ||||  |||||| ||||| |   ||||||||| | ||||||||||| || ||| ||||||  || ||||| |||||||||||| |||| ||||||||||     
T  146317 tagtcatgttttcagcttgtttcttctccaccgtacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttcag 146416  T
Q  226 gtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatctagtacaacctcaagag 299  Q
     | ||| | |||||| ||||||| ||  ||| |||| ||||||   ||||||||||| || || |||| |||||    
T  146417 ttgatccatccattgtttgacagcagtgttggtgatttgcttcagttctgcatcatccagcaccacctgaagag 146490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 282
Target Start/End: Original strand, 136166 - 136422
Alignment:
Q  26 tgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgat 125  Q
    |||||||| | |||||| || | |||||| | ||||||||| |||||||||||||  ||||   | ||||||||| | |||| || |||| | |||||||    
T  136166 tgtgcaaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggacatgaaaagaggttccaaacctgat 136265  T
Q  126 tagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 225  Q
    ||||  |||||| || || |   ||||||||||| ||||| ||||| || ||| ||||||  || ||||| |||||||||||| |||| ||||||||||     
T  136266 tagtcatgttttcagattgtatcttctccaccttacatcggagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttcag 136365  T
Q  226 gtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatc 282  Q
     | ||| | |||||| ||||||| ||  ||| |||| |||||||  |||||||||||    
T  136366 ttgatccatccattgtttgacagcagtgttggtgatttgcttctgttctgcatcatc 136422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 17853378 - 17853420
Alignment:
Q  206 tcaaagatagcatctttcaagtcatcaagccattgcttgacag 248  Q
    ||||||||||| |||||||| |||||||||||||| |||||||    
T  17853378 tcaaagatagcgtctttcaaatcatcaagccattgtttgacag 17853420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 281
Target Start/End: Complemental strand, 13932758 - 13932677
Alignment:
Q  200 tcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcat 281  Q
    ||||| ||||||| |||||||  |||   ||| ||||||||||| |||| ||| ||| |||||||||||||||| |||||||    
T  13932758 tcagcttcaaagacagcatctcgcaacagatccagccattgcttaacagcagggttggtgatctgcttctcctcagcatcat 13932677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University