View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2675_high_16 (Length: 284)

Name: NF2675_high_16
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2675_high_16
NF2675_high_16
[»] chr4 (2 HSPs)
chr4 (1-149)||(17256922-17257078)
chr4 (205-269)||(17257132-17257194)
[»] chr1 (2 HSPs)
chr1 (55-100)||(23728342-23728387)
chr1 (206-246)||(13059357-13059397)
[»] chr2 (1 HSPs)
chr2 (205-244)||(21970650-21970689)
[»] chr3 (2 HSPs)
chr3 (50-101)||(19251072-19251125)
chr3 (206-242)||(34734166-34734202)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 17256922 - 17257078
Alignment:
Q  1 tttaaataccttaatatccactaatattggtctagggaatatttat--------gagaacgccataaatatcatttttatgaaatagagagttaactact 92  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||        ||||||| ||||||||||||||||||||||||||||||||||||||    
T  17256922 tttaaataccttaatatccactaatattggtctaggggatatttatacgaatgtgagaacggcataaatatcatttttatgaaatagagagttaactact 17257021  T
Q  93 gtgtatacctaattacctatggacatccattatcatatccggtaatagtatagtaac 149  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17257022 gcgtatacctaattacctatggacatccattatcatatctggtaatagtatagtaac 17257078  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 17257132 - 17257194
Alignment:
Q  205 gtaacacttccattacaaagaaataatctcaaagtataaagaaaggaaaataaaactattgatag 269  Q
    ||||||||||||||| |||||||||||||||||||||||||| | |||||| |||||||||||||    
T  17257132 gtaacacttccattaaaaagaaataatctcaaagtataaagaga-gaaaat-aaactattgatag 17257194  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 23728387 - 23728342
Alignment:
Q  55 cataaatatcatttttatgaaatagagagttaactactgtgtatac 100  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||    
T  23728387 cataaatatcatttttatcaaatagagagttaactactatgtatac 23728342  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 13059397 - 13059357
Alignment:
Q  206 taacacttccattacaaagaaataatctcaaagtataaaga 246  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  13059397 taacacttccattaaaaagaaataatctcaaagtataaaga 13059357  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 21970650 - 21970689
Alignment:
Q  205 gtaacacttccattacaaagaaataatctcaaagtataaa 244  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  21970650 gtaacacttctattaaaaagaaataatctcaaagtataaa 21970689  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 19251072 - 19251125
Alignment:
Q  50 aacgccataaatatcatttttatgaaatagag--agttaactactgtgtatacc 101  Q
    |||| |||||||||||||||||| ||||||||  ||||||||||||| ||||||    
T  19251072 aacgacataaatatcatttttatcaaatagagatagttaactactgtttatacc 19251125  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 34734166 - 34734202
Alignment:
Q  206 taacacttccattacaaagaaataatctcaaagtata 242  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  34734166 taacacttccattaaaaataaataatctcaaagtata 34734202  T

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