View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2675_high_17 (Length: 281)
Name: NF2675_high_17
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2675_high_17 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 30876522 - 30876260
Alignment:
| Q |
19 |
agtgtcgaaggctacaatagactatcgactaggacactaagagacctcaacaccacaatctatacgttaaacttaaacatttagtatatgagaaacctct |
118 |
Q |
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| T |
30876522 |
agtgtcgaaggctgcaatagactatctactaggacactaagagacctcaacaccacaatctatacgttaaacttaaacatttagtatatgagaaacctct |
30876423 |
T |
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| Q |
119 |
cttatatatctttcattcaggtcgtttatagtcgatgtgagactaaccactcacacttaaattcaacatcatgcttatagtttgaattgtaaagcaaaaa |
218 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30876422 |
cttatatatctttcattcaggttgtttatagttgatgtgagactaaccactaacacttaaattcaacatcatgcttatagtttgaattgtaaagcaaaaa |
30876323 |
T |
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| Q |
219 |
taccagtagaaataaatatgttaaatcagtcattcatcactaaaaatctgattattattattt |
281 |
Q |
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| T |
30876322 |
tactagtagaaataaatatgttaaatcagtcattcatcactaaaaatctgattattattattt |
30876260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 25848985 - 25848953
Alignment:
| Q |
144 |
ttatagtcgatgtgagactaaccactcacactt |
176 |
Q |
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| T |
25848985 |
ttatagtcgatgttagactaaccactcacactt |
25848953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 17488948 - 17489007
Alignment:
| Q |
118 |
tcttatatatctttcattcaggtcgtttatagtcgatgtgagactaaccactcacactta |
177 |
Q |
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| T |
17488948 |
tcttatatatctttcatttagctcatttatagttgatgtaagactaaccactcaaactta |
17489007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 5272672 - 5272711
Alignment:
| Q |
143 |
tttatagtcgatgtgagactaaccactcacacttaaattc |
182 |
Q |
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| T |
5272672 |
tttatagtcgatgtgagactaaccactcacatttgaattc |
5272711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 26534704 - 26534639
Alignment:
| Q |
116 |
tctcttatatatctttcattcaggtcgtttatagtcgatgtgagactaaccactcacacttaaatt |
181 |
Q |
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| T |
26534704 |
tctcttatatatccttcatttttctcatttatagtcaatgtgagactaatcattcacacttaaatt |
26534639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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