View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2675_high_2 (Length: 640)
Name: NF2675_high_2
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2675_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Original strand, 1979895 - 1980495
Alignment:
| Q |
1 |
aggttttgagttagttgaatatttgaaggagatgcttcaattgacacggg-tgaaggattttgtggcttggacgggtgtgtggcttcgtgggggaaggaa |
99 |
Q |
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| T |
1979895 |
aggttttgagttagttgaatatttgaaggagatgcttcaattgacacggggtgacagattttgtggcttggacgtgtgtgtggcttcgtggagaaagaaa |
1979994 |
T |
|
| Q |
100 |
gattgagtaaagggagagaaaaatggcgtcataggcnnnnnnnnnnnnnnnnnnnagacatgtgtttttattaagattaaaaaacaataaacactttatt |
199 |
Q |
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| T |
1979995 |
gattgagtagagggagagaaacatggagtattagg-atttttttatctttttttgagacatgtgttttaattaagattaaaaaacaataaacaatttatt |
1980093 |
T |
|
| Q |
200 |
atttacgtttgcatgtgaccaatacaaaaatgtgggatatatattgcatcttttttgagaggagtgggat-----atagcaatcttcgtatgatatgaga |
294 |
Q |
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| T |
1980094 |
atttacgtttgcatgtgaccaatacaaaaatgtgggatatatattgcatcttttttgtgaggagtgggatgggatatagcaatcttcgtatgatatgaga |
1980193 |
T |
|
| Q |
295 |
tttctttacatcataacatggagtaacatggagtaacggatttggagtaagagaaatccctcattcacactgtcaaattaaaattagccgtctgatttaa |
394 |
Q |
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| T |
1980194 |
tttctttacatcataacatggagtaac----------ggatttggagtaagagaaatccctcattcacactgtcaaattaaaattagccgtctgatttaa |
1980283 |
T |
|
| Q |
395 |
ttaatagttcagatttagctttttctttatgaacnnnnnnntaaactaacaattaaaaatatattttaaatatttttgtcattgaagccgtgggaaagaa |
494 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1980284 |
ttaataattcagatttagctttttctttatgaacaaaaaaataaactaacaattaaaaatatattttaaatatttttgtcattgaagccgtgggaaagaa |
1980383 |
T |
|
| Q |
495 |
atcgaagagtcaaccacaaaagagattgaatactacaataccaatttcattgtcacaacaagtaggggcggagtta-gaaattacagttaaggaggccga |
593 |
Q |
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| T |
1980384 |
atcgaagagtcaaccacaaaagagattgaatactacaatacctatttcattgtaacagcaagtaggggcggagctaggaatttccagttaaggaggccga |
1980483 |
T |
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| Q |
594 |
gtacaagcaaca |
605 |
Q |
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|||||||||||| |
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| T |
1980484 |
gtacaagcaaca |
1980495 |
T |
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