View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2675_high_25 (Length: 245)

Name: NF2675_high_25
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2675_high_25
NF2675_high_25
[»] chr2 (4 HSPs)
chr2 (1-237)||(5369321-5369557)
chr2 (71-232)||(25677462-25677623)
chr2 (122-231)||(17558819-17558928)
chr2 (118-232)||(24927885-24927999)
[»] chr7 (5 HSPs)
chr7 (71-237)||(25992360-25992526)
chr7 (63-222)||(5057664-5057823)
chr7 (71-234)||(7228048-7228212)
chr7 (118-231)||(19856880-19856993)
chr7 (159-235)||(23103171-23103248)
[»] chr1 (10 HSPs)
chr1 (71-237)||(19883599-19883765)
chr1 (120-237)||(26780909-26781031)
chr1 (133-237)||(2368797-2368901)
chr1 (114-232)||(15877257-15877375)
chr1 (133-183)||(2372490-2372540)
chr1 (133-183)||(2383531-2383581)
chr1 (126-235)||(33078327-33078436)
chr1 (118-156)||(13833859-13833897)
chr1 (129-233)||(15243879-15243983)
chr1 (64-186)||(17595884-17596006)
[»] chr5 (2 HSPs)
chr5 (118-237)||(32578460-32578578)
chr5 (71-237)||(27892798-27892963)
[»] chr4 (7 HSPs)
chr4 (118-237)||(22271128-22271247)
chr4 (118-237)||(27304252-27304369)
chr4 (159-237)||(51461078-51461157)
chr4 (63-186)||(9196758-9196880)
chr4 (52-106)||(9219314-9219368)
chr4 (52-106)||(9246675-9246729)
chr4 (159-233)||(10178909-10178984)
[»] chr8 (4 HSPs)
chr8 (120-236)||(22541075-22541189)
chr8 (71-237)||(33349892-33350057)
chr8 (69-206)||(9242982-9243118)
chr8 (196-237)||(9242920-9242961)
[»] chr3 (2 HSPs)
chr3 (164-235)||(4288221-4288292)
chr3 (136-217)||(13608233-13608314)
[»] scaffold0037 (1 HSPs)
scaffold0037 (159-235)||(107640-107717)
[»] scaffold0135 (1 HSPs)
scaffold0135 (52-106)||(29965-30019)
[»] scaffold1826 (1 HSPs)
scaffold1826 (52-106)||(785-839)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 5369321 - 5369557
Alignment:
Q  1 caaattctagaagctaaggctaagcacaatcggtcgaaccgaccatactcgttgataacagataaataaattggttatcacgttgcacttaactcttata 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5369321 caaattcaagaagctaaggctaagcacaatcggtcgaaccgaccatacttgttgataaccgataaataaattggttatcacgttgcacttaactcttata 5369420  T
Q  101 atggacnnnnnnnttaatgattgcattgcctaagacatctaatcaatgactatttaatgattttatagttttagttgtttttagtattaagtaatccttt 200  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5369421 atggacaaaaaaattaatgattgcattgcctaagacatctaatcaatgactatttaatgattttatagttttagttgtttttagtattaagtaatccttt 5369520  T
Q  201 tgaactagtaatgcttgtcatggatgtttgatgatgt 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  5369521 tgaactagtaatgcttgtcatggatgtttgatgatgt 5369557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 232
Target Start/End: Original strand, 25677462 - 25677623
Alignment:
Q  71 ttggttatcacgttgcacttaactcttataatggacnnnnnnnttaatgattgcattgcctaagacatctaatcaatgactatttaatgattttatagtt 170  Q
    |||||||||| |||||||||||||| ||||||| ||       | | ||||| |||| ||||||||||||||||  || |||||||  ||||||||||||    
T  25677462 ttggttatcatgttgcacttaactcctataatgaacaagaaattgagtgatttcattacctaagacatctaatcggtgcctatttag-gattttatagtt 25677560  T
Q  171 ttagtt-gtttttagtattaagtaatccttttgaactagtaatgcttgtcatggatgtttgat 232  Q
    ||| || ||||||||| |||| || |  ||||||| |||||| ||||||  ||||||||||||    
T  25677561 ttaattagtttttagtgttaattagttgttttgaaatagtaaagcttgttgtggatgtttgat 25677623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 17558928 - 17558819
Alignment:
Q  122 tgcattgcctaagacatctaatcaatgactatttaatgattttatagtttta-gttgtttttagtattaagtaatccttttgaactagtaatgcttgtca 220  Q
    ||||| |||||| ||||||||||| |||||||||| ||| ||||| |||||| || ||||||||| |||| ||||| |||| |||||||||||| |||      
T  17558928 tgcatggcctaaaacatctaatcagtgactattta-tgaatttatggttttaagtagtttttagtgttaattaatcattttaaactagtaatgcatgttt 17558830  T
Q  221 tggatgtttga 231  Q
    || ||||||||    
T  17558829 tgaatgtttga 17558819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 24927885 - 24927999
Alignment:
Q  118 tgattgcattgcctaagacatctaatcaatgactatttaatgattttatagttttagtt-gtttttagtattaagtaatccttttgaactagtaatgctt 216  Q
    ||||| |||| ||||||||||||||||  || |||||| | ||||||||||||||| || ||||||||| |||| || |  ||||||| |||||| ||||    
T  24927885 tgatttcattacctaagacatctaatcggtgcctattt-aggattttatagttttaattagtttttagtgttaattagttgttttgaaatagtaaagctt 24927983  T
Q  217 gtcatggatgtttgat 232  Q
    ||  || |||||||||    
T  24927984 gttgtgaatgtttgat 24927999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 237
Target Start/End: Complemental strand, 25992526 - 25992360
Alignment:
Q  71 ttggttatcacgttgcacttaactcttataatggacnnnnnnnttaatgattgcattgcctaagacatctaatcaatgactatttaatgattttatagtt 170  Q
    ||||||||||| ||||||||||||| |  |||| ||       ||| ||||||||||||||||||||||||||   ||||||||| | ||| ||||||||    
T  25992526 ttggttatcacattgcacttaactccttgaatgaacgagaaatttagtgattgcattgcctaagacatctaattggtgactattttaggatgttatagtt 25992427  T
Q  171 ttagttgtttttagtattaagtaatccttttgaactagtaatgcttgtcatggatgtttgatgatgt 237  Q
    ||||||||||||||| |||  ||||| ||||||| ||||||||||||||||||||||||||||||||    
T  25992426 ttagttgtttttagtgttatttaatcattttgaattagtaatgcttgtcatggatgtttgatgatgt 25992360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 63 - 222
Target Start/End: Complemental strand, 5057823 - 5057664
Alignment:
Q  63 taaataaattggttatcacgttgcacttaactcttataatggacnnnnnnnttaatgattgcattgcctaagacatctaatcaatgactatttaatgatt 162  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||       | | ||||| || ||||||||||||||||||| ||||||||| | ||||    
T  5057823 taaataagttggttatcacgttgcacttagctctcataatggacaaataattgagtgattacaatgcctaagacatctaatcagtgactattttaagatt 5057724  T
Q  163 ttatagttttagttgtttttagtattaagtaatccttttgaactagtaatgcttgtcatg 222  Q
    ||||| ||||||||||||||| | |||| ||||||| || ||||||||||| ||||||||    
T  5057723 ttataattttagttgtttttaatgttaattaatcctcttcaactagtaatgtttgtcatg 5057664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 7228048 - 7228212
Alignment:
Q  71 ttggttatcacgttgcacttaactcttataatggacnnnnnnnttaatgattgcattgcctaagacatctaatcaatgactatttaatgattttatagtt 170  Q
    ||||||||||||||||||||| ||| ||||||| ||       | | |||||| ||||||||||| ||||||||| || |||||||    ||||||||||    
T  7228048 ttggttatcacgttgcacttagctcctataatgaacaagaaattgagtgattgaattgcctaagagatctaatcagtgcctatttagaatttttatagtt 7228147  T
Q  171 tta-gttgtttttagtattaagtaatccttttgaactagtaatgcttgtcatggatgtttgatga 234  Q
    ||| || || |||||| |||| ||||| |||||||||||||||| ||||  |  |||||||||||    
T  7228148 ttaagtagtgtttagtgttaattaatctttttgaactagtaatgattgttgtacatgtttgatga 7228212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 19856993 - 19856880
Alignment:
Q  118 tgattgcattgcctaagacatctaatcaatgactatttaatgattttatagtttta-gttgtttttagtattaagtaatccttttgaactagtaatgctt 216  Q
    |||||||||||||||| || | |||||| |  | |||||  ||||||||||||||| |||||||||||| |||| ||||| |||||||||||| ||||||    
T  19856993 tgattgcattgcctaaaacctataatcatttccaatttag-gattttatagttttaagttgtttttagtgttaattaatcattttgaactagtgatgctt 19856895  T
Q  217 gtcatggatgtttga 231  Q
    ||  |||||||||||    
T  19856894 gttgtggatgtttga 19856880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 23103171 - 23103248
Alignment:
Q  159 gattttatagttttagtt-gtttttagtattaagtaatccttttgaactagtaatgcttgtcatggatgtttgatgat 235  Q
    ||||||||||||||| || ||||||||| |||| || || |||||||||||||||||||||  ||||||||| |||||    
T  23103171 gattttatagttttaattagtttttagtgttaattattcattttgaactagtaatgcttgttgtggatgtttaatgat 23103248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 237
Target Start/End: Complemental strand, 19883765 - 19883599
Alignment:
Q  71 ttggttatcacgttgcacttaactcttataatggacnnnnnnnttaatgattgcattgcctaagacatctaatcaatgactatttaatgattttatagtt 170  Q
    |||||||||||||||||||||||||  |||| ||||         | |||||||||||| ||||||||||||||| ||||||||| | ||| |||||| |    
T  19883765 ttggttatcacgttgcacttaactcccataagggacaagaaatcgagtgattgcattgcttaagacatctaatcagtgactattttaagatcttataggt 19883666  T
Q  171 ttagttgtttttagtattaagtaatccttttgaactagtaatgcttgtcatggatgtttgatgatgt 237  Q
     ||||||| |||||| ||| ||||||| |||||||| |||||||||| |||||| ||||||||||||    
T  19883665 gtagttgtctttagtgttatgtaatccatttgaacttgtaatgcttgccatggacgtttgatgatgt 19883599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 26781031 - 26780909
Alignment:
Q  120 attgcattgcctaagacatctaatcaatgactatttaa-----tgattttatagttttagttgtttttagtattaagtaatccttttgaactagtaatgc 214  Q
    ||||||||||||||||||| ||||||||| |||||||      |  |||| || ||| ||||||||||||| |||| ||||| |||||||||||||||||    
T  26781031 attgcattgcctaagacatataatcaatgcctatttaggattttttttttttaatttaagttgtttttagtgttaattaatcattttgaactagtaatgc 26780932  T
Q  215 ttgtcatggatgtttgatgatgt 237  Q
    ||||| |||||||||||||||||    
T  26780931 ttgtcctggatgtttgatgatgt 26780909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 2368797 - 2368901
Alignment:
Q  133 agacatctaatcaatgactatttaatgattttatagttttagttgtttttagtattaagtaatccttttgaactagtaatgcttgtcatggatgtttgat 232  Q
    |||| |||||| | ||||||||| | ||||||||||||||||||||||||| | |||  ||||||||| |||||||||||  ||| ||||||| ||| ||    
T  2368797 agacgtctaattagtgactattttaagattttatagttttagttgtttttaatgttatttaatcctttggaactagtaataattgccatggatatttaat 2368896  T
Q  233 gatgt 237  Q
    |||||    
T  2368897 gatgt 2368901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 232
Target Start/End: Original strand, 15877257 - 15877375
Alignment:
Q  114 ttaatgattgcattgcctaagacatctaatcaatgactatttaatgattttatagtttta-gttgtttttagtattaagtaatccttttgaactagtaat 212  Q
    ||||||| ||||||||||||  |||||||||| || || | ||  |||||||||| |||| || ||||||||| |||| ||||| |||||||||||||||    
T  15877257 ttaatgaatgcattgcctaaagcatctaatcagtggctttctag-gattttatagctttaagtagtttttagtgttaattaatcattttgaactagtaat 15877355  T
Q  213 gcttgtcatggatgtttgat 232  Q
    | ||||  ||||||||||||    
T  15877356 gattgttgtggatgtttgat 15877375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 2372490 - 2372540
Alignment:
Q  133 agacatctaatcaatgactatttaatgattttatagttttagttgttttta 183  Q
    |||| |||||||| ||||||||| | |||||||||||||||||||||||||    
T  2372490 agacgtctaatcagtgactattttaagattttatagttttagttgttttta 2372540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 2383581 - 2383531
Alignment:
Q  133 agacatctaatcaatgactatttaatgattttatagttttagttgttttta 183  Q
    |||| |||||||| ||||||||| | |||||||||||||||||||||||||    
T  2383581 agacgtctaatcagtgactattttaagattttatagttttagttgttttta 2383531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 235
Target Start/End: Original strand, 33078327 - 33078436
Alignment:
Q  126 ttgcctaagacatctaatcaatgactatttaatgattttatagttttagtt-gtttttagtattaagtaatccttttgaactagtaatgcttgtcatgga 224  Q
    |||||||| | ||||||||| ||||||||||  ||||||| ||||||| || ||||||||| |||| || || |||||||||| | ||||||||  || |    
T  33078327 ttgcctaaaatatctaatcagtgactatttag-gattttagagttttaattagtttttagtgttaattactcattttgaactaatgatgcttgttttgaa 33078425  T
Q  225 tgtttgatgat 235  Q
    |||||||||||    
T  33078426 tgtttgatgat 33078436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 13833859 - 13833897
Alignment:
Q  118 tgattgcattgcctaagacatctaatcaatgactattta 156  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  13833859 tgattgcattgcctaagacatctaatcagtgacaattta 13833897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 15243879 - 15243983
Alignment:
Q  129 cctaagacatctaatcaatgactatttaatgattttatagttttagttg-tttttagtattaagtaatccttttgaactagtaatgcttgtcatggatgt 227  Q
    ||||| ||||||||||| ||||||||||  || ||||| |||||| ||  |||||||| |||  | ||| |||||||||||||||||||||  ||||||     
T  15243879 cctaaaacatctaatcagtgactatttag-gaatttatggttttaattaatttttagtgttatttgatcattttgaactagtaatgcttgttttggatga 15243977  T
Q  228 ttgatg 233  Q
    ||||||    
T  15243978 ttgatg 15243983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 17595884 - 17596006
Alignment:
Q  64 aaataaattggttatcacgttgcacttaactcttataatggacnnnnnnnttaatgattgcattgcctaagacatctaatcaatgactatttaatgattt 163  Q
    |||||| ||||||||||||||||| | ||| |||||| | |||       | | |||||| |||||||   |||||||| ||||| |||||| | |||||    
T  17595884 aaataagttggttatcacgttgcattcaacccttatatttgactagttattgagtgattgtattgccttcaacatctaaacaatgtctattttaggattt 17595983  T
Q  164 tatagttttagttgtttttagta 186  Q
    ||||||||||  |||||||||||    
T  17595984 tatagttttaaatgtttttagta 17596006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 237
Target Start/End: Original strand, 32578460 - 32578578
Alignment:
Q  118 tgattgcattgcctaagacatctaatcaatgactatttaatgattttatagttttagttgtttttagtattaagtaatccttttgaactagtaatgcttg 217  Q
    |||||||||||||||||||||| ||| | ||  ||||||| ||||||||| ||| | || |||||||| |||| |||| |||||||||||||||||||||    
T  32578460 tgattgcattgcctaagacatcaaataagtgcatatttaa-gattttataatttaatttttttttagtgttaattaattcttttgaactagtaatgcttg 32578558  T
Q  218 tcatggatgtttgatgatgt 237  Q
    ||||||||||||||||||||    
T  32578559 tcatggatgtttgatgatgt 32578578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 237
Target Start/End: Original strand, 27892798 - 27892963
Alignment:
Q  71 ttggttatcacgttgcacttaactcttataatggacnnnnnnnttaatgattgcattgcctaagacatctaatcaatgactatttaatgattttatagtt 170  Q
    |||||||||||||||||||||||||| |||||||||       | | |||| ||||||||||||| ||||||| | || ||||||| | ||||||||| |    
T  27892798 ttggttatcacgttgcacttaactctaataatggacaagaaattgattgatcgcattgcctaagatatctaataagtgtctatttagt-attttatagat 27892896  T
Q  171 tta-gttgtttttagtattaagtaatccttttgaactagtaatgcttgtcatggatgtttgatgatgt 237  Q
    ||| |||||||||||| |||  ||||| |||||||||||||||||||||  || ||||||||||||||    
T  27892897 ttaagttgtttttagtgttat-taatcattttgaactagtaatgcttgttgtgtatgtttgatgatgt 27892963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 237
Target Start/End: Complemental strand, 22271247 - 22271128
Alignment:
Q  118 tgattgcattgcctaagacatctaatcaatgactatttaatgattttatagttttagttgtttttagtattaagtaatccttttgaactagtaatgcttg 217  Q
    |||||||| || ||||||||| |||||| ||||||||| | |||||||||||||||||| |||||||| |||  ||||| |||||||||| ||||| |||    
T  22271247 tgattgcactgtctaagacatataatcagtgactattttaggattttatagttttagttatttttagtgttatttaatcattttgaactaataatgtttg 22271148  T
Q  218 tcatggatgtttgatgatgt 237  Q
    | ||||||||||||||||||    
T  22271147 ttatggatgtttgatgatgt 22271128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 237
Target Start/End: Original strand, 27304252 - 27304369
Alignment:
Q  118 tgattgcattgcctaagacatctaatcaatgactatttaatgattttatagttttagttgtttttagtattaagtaatccttttgaactagtaatgcttg 217  Q
    |||||||||||||| |||| |||||| | || ||||||| |||||| |||| || ||||||||||||| |||| || || |||||||||||||||||||     
T  27304252 tgattgcattgcctgagacgtctaattagtgcctattta-tgattt-atagattaagttgtttttagtgttaattagtcattttgaactagtaatgcttt 27304349  T
Q  218 tcatggatgtttgatgatgt 237  Q
    ||||| ||||||||| ||||    
T  27304350 tcatgaatgtttgattatgt 27304369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 51461078 - 51461157
Alignment:
Q  159 gattttatagtttta-gttgtttttagtattaagtaatccttttgaactagtaatgcttgtcatggatgtttgatgatgt 237  Q
    ||||||||| ||||| |||||||||||| |||| ||||| |||||||||| ||||||||||  |||||||||||| ||||    
T  51461078 gattttataattttaagttgtttttagtgttaattaatcattttgaactattaatgcttgttgtggatgtttgataatgt 51461157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 186
Target Start/End: Original strand, 9196758 - 9196880
Alignment:
Q  63 taaataaattggttatcacgttgcacttaactcttataatggacnnnnnnnttaatgattgcattgcctaagacatctaatcaatgactatttaatgatt 162  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||       | | ||||||||||||||   ||||||||||  ||  ||||| | ||||    
T  9196758 taaataaattgattatcacgttgcacttaactgttatattggacaagtaattgagtgattgcattgcctttaacatctaatctgtgtttattt-aggatt 9196856  T
Q  163 ttatagttttagttgtttttagta 186  Q
    |||||||||||  |||||||||||    
T  9196857 ttatagttttaagtgtttttagta 9196880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 9219314 - 9219368
Alignment:
Q  52 ttgataacagataaataaattggttatcacgttgcacttaactcttataatggac 106  Q
    |||||||| | | ||||||||||||| |||||||||||||||||||||| |||||    
T  9219314 ttgataactggtgaataaattggttaccacgttgcacttaactcttatattggac 9219368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 9246675 - 9246729
Alignment:
Q  52 ttgataacagataaataaattggttatcacgttgcacttaactcttataatggac 106  Q
    |||||||| | ||||||||||||||||||  |||||||||||||||||| |||||    
T  9246675 ttgataaccggtaaataaattggttatcagattgcacttaactcttatattggac 9246729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 10178909 - 10178984
Alignment:
Q  159 gattttatagttttagttg-tttttagtattaagtaatccttttgaactagtaatgcttgtcatggatgtttgatg 233  Q
    ||||||||||||||| ||  |||||||| |||  ||||| ||||||||||||||| |||||  |||||||||||||    
T  10178909 gattttatagttttaattaatttttagtgttatttaatcattttgaactagtaatacttgttttggatgtttgatg 10178984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 22541075 - 22541189
Alignment:
Q  120 attgcattgcctaagacatctaatcaatgactatttaatgattttatagttttagttgtttttagtattaagtaatccttttgaactagtaatgcttgtc 219  Q
    |||||||||||| |||||||||||||||| |||||||| ||||||||||| ||| ||  ||| ||| |||| ||||| |||||||||||||||||||||     
T  22541075 attgcattgcctcagacatctaatcaatgtctatttaa-gattttatagtcttaattagttt-agttttaattaatcattttgaactagtaatgcttgtt 22541172  T
Q  220 atggatgtttgatgatg 236  Q
     ||||||||||||||||    
T  22541173 gtggatgtttgatgatg 22541189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 237
Target Start/End: Complemental strand, 33350057 - 33349892
Alignment:
Q  71 ttggttatcacgttgcacttaactcttataatggacnnnnnnnttaatgattgcattgcctaagacatctaatcaatgactatttaatgattttatagtt 170  Q
    ||||||||||| ||||||||| |||| |||||||||       | | ||||||||||| ||||||||||| |||| ||||||||| | ||||||||| ||    
T  33350057 ttggttatcacattgcacttagctctcataatggacaagaaattaagtgattgcattggctaagacatcttatca-tgactattttaggattttataatt 33349959  T
Q  171 ttagttgtttttagtattaagtaatccttttgaactagtaatgcttgtcatggatgtttgatgatgt 237  Q
    ||||| |||| |||| |||  |||| ||||||||  | ||||||||||||||||| | |||||||||    
T  33349958 ttagtagtttatagtgttatttaatacttttgaatcactaatgcttgtcatggatttctgatgatgt 33349892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 9243118 - 9242982
Alignment:
Q  69 aattggttatcacgttgcacttaactcttataatggacnnnnnnnttaatgattgcattgcctaagacatctaatcaatgactatttaatgattttatag 168  Q
    |||||||||| | |||||||||||| |  |||||||||       ||| |||||| |||||||||||||| ||||||||| |||||| | ||||||||||    
T  9243118 aattggttatgatgttgcacttaacccccataatggacaagaaatttagtgattgaattgcctaagacatttaatcaatgtctattt-aggattttatag 9243020  T
Q  169 ttttagttgtttttagtattaagtaatccttttgaact 206  Q
    ||| ||||||||| | | |||| ||| | |||||||||    
T  9243019 tttaagttgttttaaatgttaattaaacattttgaact 9242982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 9242961 - 9242920
Alignment:
Q  196 ccttttgaactagtaatgcttgtcatggatgtttgatgatgt 237  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  9242961 ccttttgaactagtaatgcttgtcatagatatttgatgatgt 9242920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 4288292 - 4288221
Alignment:
Q  164 tatagttttagttgtttttagtattaagtaatccttttgaactagtaatgcttgtcatggatgtttgatgat 235  Q
    ||||||||  |||||||||||| |||| ||||| |||||||||||||||| |||| ||||||||| ||||||    
T  4288292 tatagtttatgttgtttttagtgttaattaatcattttgaactagtaatgtttgttatggatgttcgatgat 4288221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 217
Target Start/End: Complemental strand, 13608314 - 13608233
Alignment:
Q  136 catctaatcaatgactatttaatgattttatagttttagttgtttttagtattaagtaatccttttgaactagtaatgcttg 217  Q
    |||||||||| || |||||| | |||||||||||||| ||||| ||| || |||| ||||| ||| |||||||| |||||||    
T  13608314 catctaatcagtgcctattttaagattttatagtttttgttgtgttttgtgttaattaatcatttagaactagtgatgcttg 13608233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 107640 - 107717
Alignment:
Q  159 gattttatagttttagtt-gtttttagtattaagtaatccttttgaactagtaatgcttgtcatggatgtttgatgat 235  Q
    ||||||||||||||| || ||||||||| |||| |||||  ||||||||||||||||||||  |||| ||||||||||    
T  107640 gattttatagttttaattagtttttagtgttaattaatcaatttgaactagtaatgcttgttgtggaagtttgatgat 107717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 29965 - 30019
Alignment:
Q  52 ttgataacagataaataaattggttatcacgttgcacttaactcttataatggac 106  Q
    |||||||| | | ||||||||||||| |||||||||||||||||||||| |||||    
T  29965 ttgataactggtgaataaattggttaccacgttgcacttaactcttatattggac 30019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1826 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1826
Description:

Target: scaffold1826; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 785 - 839
Alignment:
Q  52 ttgataacagataaataaattggttatcacgttgcacttaactcttataatggac 106  Q
    |||||||| | ||||||||||| |||||| ||||||||| ||||||||| |||||    
T  785 ttgataaccggtaaataaattgattatcaggttgcactttactcttatagtggac 839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University