View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2675_high_33 (Length: 213)
Name: NF2675_high_33
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2675_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 28553362 - 28553164
Alignment:
| Q |
1 |
tgtcacactatttgcatgtattattcctttaaccttcgattatgtattttgttactattatgagtagctaaactcattagattatgattgaatgatgaac |
100 |
Q |
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| T |
28553362 |
tgtcacactatttgcatgtattattcctttaaccttcgattatgtattttgttactattatgagtagctaaactcattagattataattgaatgatgaac |
28553263 |
T |
|
| Q |
101 |
ctctatgatactatttgaaaccatgcaatctactagttctccttaattcaatttgaacctatgtttattcattatatattttgtttaatggtatttatt |
199 |
Q |
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| T |
28553262 |
ctctatgatactatttgaaaccatgcaatctactagttctccttaattcaatttgaacctatgtttattcattatatattttgtttaatggtatttatt |
28553164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 29636566 - 29636502
Alignment:
| Q |
54 |
actattatgagtagctaaactcattagattatgattgaatgatgaacctctatgatactatttga |
118 |
Q |
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| T |
29636566 |
actatcatgagcacctaaactcattaggttaggattgaatgatgaacatctatggtactatttga |
29636502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 52256676 - 52256612
Alignment:
| Q |
16 |
atgtattattcctttaaccttcgattatgtattttgttactattatgagtagctaaactcattagatt |
83 |
Q |
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| T |
52256676 |
atgtattgttctttaaacctttgattatgt---ttattactattatgagtagctaaactcgttagatt |
52256612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 26511771 - 26511811
Alignment:
| Q |
60 |
atgagtagctaaactcattagattatgattgaatgatgaac |
100 |
Q |
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| T |
26511771 |
atgagtagttaaactcattagatcatgattgaatggtgaac |
26511811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 8355585 - 8355532
Alignment:
| Q |
72 |
actcattagattatgattgaatgatgaacctctatgatactatttgaaaccatg |
125 |
Q |
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| T |
8355585 |
actcattagattatgattgaataataaacatctatggtactgtttaaaaccatg |
8355532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 31258888 - 31258807
Alignment:
| Q |
38 |
gattatgtattttgttactattatgagtagctaaactcattagattatgattgaatgatgaacctctatgatactatttgaa |
119 |
Q |
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| T |
31258888 |
gattatgttgtttattaatatgataagtagctaaactcattagatttagatttaatgatgaacttgtatgatattgtttgaa |
31258807 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 31008101 - 31008133
Alignment:
| Q |
68 |
ctaaactcattagattatgattgaatgatgaac |
100 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
31008101 |
ctaaactctttagattatgattgaatgatgaac |
31008133 |
T |
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