View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2675_low_1 (Length: 676)
Name: NF2675_low_1
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2675_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 18 - 669
Target Start/End: Complemental strand, 40104362 - 40103717
Alignment:
| Q |
18 |
aatgggagtctcctccgaaataataatggtacttgtttgagagatatgcataaaggatttgttcttgtgatgtagtccatgctgagatgtgggacatgta |
117 |
Q |
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| T |
40104362 |
aatgggagtctcctccgaaataataatggtacttgtttgagagatatgcatgaaggattggttcttgcgatgtagtccatgctgagatgtggtacatgta |
40104263 |
T |
|
| Q |
118 |
tatcaagatagctatggattaatcgcctctaagttaacagtatctcaaggtgttagttgacatggtaagatagcactttaaaacgaacgagaatattcct |
217 |
Q |
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| T |
40104262 |
tatcaagattgatatggattagtcgcctctaagttaacagtatctcaaggtgttagttgacatggtaagatagcactttaaaacgaa-----atattcct |
40104168 |
T |
|
| Q |
218 |
actctagttcgtcacatttgtgaccttatgaacatgagtaaacaagtttaaatcaaccatacaaatatatcaaccaattagtgattcaattttagttttg |
317 |
Q |
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| T |
40104167 |
actctggttcgtcacatttgtgaccttatgaacatgagtaaacaagtttaaaacaaccatacaaatatatcaaccaattagtgatttaattttagttttg |
40104068 |
T |
|
| Q |
318 |
atttatactctcttgtttatgatatataagagattacttttataaaacctcatagtctcctttttgggtaatttctcataattttgacagaaaatctctg |
417 |
Q |
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| T |
40104067 |
atttatactcttttgtttatgatatataagagattacttttataaaacctcatagtctcctttttgggtaatttgtcataattttgacagaaaatctctg |
40103968 |
T |
|
| Q |
418 |
ctttgaccaaggtatggatgtgggtgtgtgtgggttttacttgattatttaaagtcgagctcgagtgttgatatcgtccccaccccaccacgttagtatt |
517 |
Q |
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| T |
40103967 |
ctttgaccaaggtatggatgtgagtgtgtgtgagttttacttgattatttaaagtcgaggtcgagtgttgatatcgtccccaccctaccatgttagtatt |
40103868 |
T |
|
| Q |
518 |
atatatgtgtgttctttgtctttaatattcgagaaagtatttgatagatacatatctaaattaatattatttgaacacgttcacataaaatcaacaaaat |
617 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||| ||||||||||||| |
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| T |
40103867 |
atatat--gtgttctttgtctttaatattcgagaaagtagttgatagatacatacctaaattaatattatttggacacgttgacatgaaatcaacaaaat |
40103770 |
T |
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| Q |
618 |
tagacaaaaataa-taagtcacaccaactaatatcatttaattcttcttctct |
669 |
Q |
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| T |
40103769 |
tagacaacaataattcagtcacaccaactgatatcatttaatttttcttctct |
40103717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 548 - 661
Target Start/End: Complemental strand, 11844163 - 11844054
Alignment:
| Q |
548 |
gagaaagtatttgatagatacatatctaaattaatattatttgaacacgttcacataaaatcaacaaaattagacaaaaataataagtcacaccaactaa |
647 |
Q |
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|||||||| ||| ||| | ||||| |||||| ||||||||||| ||| |||||| |||||||||||| ||||||||||| |||||| ||| | | |
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| T |
11844163 |
gagaaagtctttcataaacacatacctaaatcaatattatttgggcacactcacatgaaatcaacaaaa----acaaaaataatcggtcacatcaattga |
11844068 |
T |
|
| Q |
648 |
tatcatttaattct |
661 |
Q |
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||||||||||||| |
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| T |
11844067 |
catcatttaattct |
11844054 |
T |
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Back To:
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