View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2675_low_13 (Length: 380)

Name: NF2675_low_13
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2675_low_13
NF2675_low_13
[»] chr7 (2 HSPs)
chr7 (78-275)||(1416579-1416776)
chr7 (13-62)||(1416538-1416587)
[»] chr4 (6 HSPs)
chr4 (271-364)||(18699003-18699096)
chr4 (271-364)||(18655080-18655173)
chr4 (271-364)||(18731107-18731200)
chr4 (271-364)||(18723688-18723781)
chr4 (283-364)||(18679163-18679244)
chr4 (273-364)||(18074243-18074336)
[»] chr6 (11 HSPs)
chr6 (277-364)||(26802931-26803021)
chr6 (273-364)||(28781585-28781676)
chr6 (273-364)||(28786722-28786813)
chr6 (273-364)||(28792843-28792934)
chr6 (273-364)||(27427219-27427312)
chr6 (273-364)||(27604311-27604404)
chr6 (277-364)||(27592628-27592715)
chr6 (277-364)||(27679438-27679525)
chr6 (277-364)||(27677227-27677311)
chr6 (277-364)||(27706011-27706098)
chr6 (277-331)||(27698226-27698280)
[»] scaffold0419 (1 HSPs)
scaffold0419 (273-364)||(7971-8062)
[»] scaffold0277 (2 HSPs)
scaffold0277 (273-364)||(13282-13373)
scaffold0277 (273-364)||(4319-4412)
[»] scaffold0003 (1 HSPs)
scaffold0003 (273-364)||(60051-60144)
[»] chr8 (1 HSPs)
chr8 (95-185)||(27029728-27029818)
[»] scaffold0349 (1 HSPs)
scaffold0349 (309-362)||(14082-14135)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 78 - 275
Target Start/End: Original strand, 1416579 - 1416776
Alignment:
Q  78 ggacagactttggagggttttgaataaattttcaagtcgttctcatatctttataatattctcaaaccaaagaaactataagttataagtattatttttc 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1416579 ggacagactttggagggttttgaataaattttcaagtcgttctcatatctttataatattctcaaaccaaagaaaatataagttataagtattatttttc 1416678  T
Q  178 catcctctcaaagaaatactattctaaataaggtgaaatttttccttttccttactccaatttcctcaaaggcctcatcctaactcccaaacaaagtc 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1416679 catcctctcaaagaaatactattctaaataaggtgaaatttttccttttccttactcctatttcctcaaaggcctcatcctaactcccaaacaaagtc 1416776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 1416538 - 1416587
Alignment:
Q  13 aaggagaaaagggaaggggaacagaaaatagtcctcactatggacagact 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1416538 aaggagaaaagggaaggggaacagaaaatagtcctcactatggacagact 1416587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 271 - 364
Target Start/End: Complemental strand, 18699096 - 18699003
Alignment:
Q  271 aagtcaaaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18699096 aagtcaaaatagttagaaatgtatgatatactatgaggacatggatgtgactgtgatgttgttacacactgatttatcttattggacatgaata 18699003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 271 - 364
Target Start/End: Complemental strand, 18655173 - 18655080
Alignment:
Q  271 aagtcaaaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18655173 aagtcaaaatagttagaaatgtatgatatattatgagtaaatggatgtgactgtgatgttgttacacactgatttatcttattggacatgaata 18655080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 271 - 364
Target Start/End: Complemental strand, 18731200 - 18731107
Alignment:
Q  271 aagtcaaaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  18731200 aagtcaaaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttgttacatactgacttatcttattggacatgaata 18731107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 271 - 364
Target Start/End: Complemental strand, 18723781 - 18723688
Alignment:
Q  271 aagtcaaaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  18723781 aagtcaaaatagttagaaatgtatgatatattatgagtaaatggatgtgactgtgatgttgttacatactgacttatcttattggacatgaata 18723688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 283 - 364
Target Start/End: Complemental strand, 18679244 - 18679163
Alignment:
Q  283 ttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  18679244 ttagaaatgtatgatatattatgagtacatgggtgtgactgtgatgttgttacatactgacttatcttattggacatgaata 18679163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 273 - 364
Target Start/End: Original strand, 18074243 - 18074336
Alignment:
Q  273 gtcaaaatagttagaaatgtatgatatattatgaggacatggatgtga--ctgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||   |||||||||| |||| ||| | |||| ||||||||||||||||    
T  18074243 gtcaaaatagttaaaaatgtataatatattatgagtacatggatgtgattgtgtgatgttgttacatactaacttatattattggacatgaata 18074336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 277 - 364
Target Start/End: Original strand, 26802931 - 26803021
Alignment:
Q  277 aaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttg---gtacacactgatttatcttattggacatgaata 364  Q
    |||||||||||||||||| |||||||||||| |||||||||||| ||||||||||   ||||| ||| | ||||||| |||||||||||||    
T  26802931 aaatagttagaaatgtataatatattatgagtacatggatgtgattgtgatgttgttagtacatactaacttatcttgttggacatgaata 26803021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 273 - 364
Target Start/End: Original strand, 28781585 - 28781676
Alignment:
Q  273 gtcaaaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    ||||||||||||||||||||||  |||||| |||| |||||||||||| |||||||||| |||| ||| | |||||||||  ||||||||||    
T  28781585 gtcaaaatagttagaaatgtatactatattctgagtacatggatgtgattgtgatgttgttacatactaacttatcttatatgacatgaata 28781676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 273 - 364
Target Start/End: Original strand, 28786722 - 28786813
Alignment:
Q  273 gtcaaaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    ||||||||||||||||||||||  |||||| |||| |||||||||||| |||||||||| |||| ||| | |||||||||  ||||||||||    
T  28786722 gtcaaaatagttagaaatgtatactatattctgagtacatggatgtgattgtgatgttgttacatactaacttatcttatatgacatgaata 28786813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 273 - 364
Target Start/End: Original strand, 28792843 - 28792934
Alignment:
Q  273 gtcaaaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    ||||||||||||||||||||||  |||||| |||| |||||||||||| |||||||||| |||| ||| | ||||||||| |||||| ||||    
T  28792843 gtcaaaatagttagaaatgtatactatattctgagtacatggatgtgattgtgatgttgttacatactaacttatcttatcggacattaata 28792934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 273 - 364
Target Start/End: Complemental strand, 27427312 - 27427219
Alignment:
Q  273 gtcaaaatagttagaaatgtatgatatattatgaggacatggatgtga--ctgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||   |||||||||| |||| ||| | |||| ||||||||||||||||    
T  27427312 gtcaaaatagttaaaaatgtataatatattatgagtacatggatgtgattgtgtgatgttgttacatactaacttatattattggacatgaata 27427219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 273 - 364
Target Start/End: Complemental strand, 27604404 - 27604311
Alignment:
Q  273 gtcaaaatagttagaaatgtatgatatattatgagg--acatggatgtgactgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    |||||||||||||||||||||| ||||||| ||||   |||||||||||| | |||||||| |||| ||| | |||||||||||||||||||||    
T  27604404 gtcaaaatagttagaaatgtataatatattctgagtgtacatggatgtgattatgatgttgttacatactaacttatcttattggacatgaata 27604311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 364
Target Start/End: Complemental strand, 27592715 - 27592628
Alignment:
Q  277 aaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    |||||||||||||||||| ||| ||| | || |||||||||||| |||||||||| || ||||| | ||||||||||| |||||||||    
T  27592715 aaatagttagaaatgtataatacattcttagtacatggatgtgattgtgatgttgttagacactaacttatcttattgcacatgaata 27592628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 364
Target Start/End: Original strand, 27679438 - 27679525
Alignment:
Q  277 aaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    |||||||||||||||||| ||| ||| | || |||||||||||| |||||||||| || ||||| | ||||||||||| |||||||||    
T  27679438 aaatagttagaaatgtataatacattcttagtacatggatgtgattgtgatgttgttagacactaacttatcttattgcacatgaata 27679525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 364
Target Start/End: Complemental strand, 27677311 - 27677227
Alignment:
Q  277 aaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    |||||||||||||||||| ||| ||||   | |||||||||||| |||||||||| || ||||| | ||||||||||| |||||||||    
T  27677311 aaatagttagaaatgtataatacatta---gtacatggatgtgattgtgatgttgttagacactaacttatcttattgcacatgaata 27677227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 277 - 364
Target Start/End: Complemental strand, 27706098 - 27706011
Alignment:
Q  277 aaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    ||||||||||||||| || ||| ||| | || |||||||||||| || ||||||| || ||||| | ||||||||||| |||||||||    
T  27706098 aaatagttagaaatgaataatacattcttagtacatggatgtgattgggatgttgttagacactaacttatcttattgcacatgaata 27706011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 27698280 - 27698226
Alignment:
Q  277 aaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttg 331  Q
    |||||||||||||| ||| ||||||| |||| |||| ||||||| ||||||||||    
T  27698280 aaatagttagaaatttataatatattctgagtacatagatgtgattgtgatgttg 27698226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 273 - 364
Target Start/End: Original strand, 7971 - 8062
Alignment:
Q  273 gtcaaaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    ||||||||||||||||||||||  |||||| |||| |||||||||||| |||||||||| |||| ||| | |||||||||  ||||||||||    
T  7971 gtcaaaatagttagaaatgtatactatattctgagtacatggatgtgattgtgatgttgttacatactaacttatcttatatgacatgaata 8062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 273 - 364
Target Start/End: Complemental strand, 13373 - 13282
Alignment:
Q  273 gtcaaaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    ||||||||||||||||||||||  |||||| |||| |||||||||||| |||||||||| |||| ||| | |||||||||  ||||||||||    
T  13373 gtcaaaatagttagaaatgtatactatattctgagtacatggatgtgattgtgatgttgttacatactaacttatcttatatgacatgaata 13282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 364
Target Start/End: Complemental strand, 4412 - 4319
Alignment:
Q  273 gtcaaaatagttagaaatgtatg--atatattatgaggacatggatgtgactgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    |||| |||||||||||||||||   |||||||||||| |||||||||||| |||||||||| |||| ||| | ||||||||| |||||| ||||    
T  4412 gtcacaatagttagaaatgtataccatatattatgagtacatggatgtgattgtgatgttgttacatactaacttatcttatcggacattaata 4319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 273 - 364
Target Start/End: Original strand, 60051 - 60144
Alignment:
Q  273 gtcaaaatagttagaaatgtatgatatattatgaggacatggatgtga--ctgtgatgttggtacacactgatttatcttattggacatgaata 364  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||   |||||||||| |||| ||| | |||| ||||||||||||||||    
T  60051 gtcaaaatagttaaaaatgtataatatattatgagtacatggatgtgattgtgtgatgttgttacatactaacttatattattggacatgaata 60144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 27029818 - 27029728
Alignment:
Q  95 ttttgaataaattttcaagtcgttctcatatctttataatattctcaaaccaaagaaactataagttataagtattatttttccatcctct 185  Q
    ||||||||||||||||||  ||||||||| ||||| ||||| |||||||||| |||||  || | |  |||||||| || |||||||||||    
T  27029818 ttttgaataaattttcaaaccgttctcatctctttgtaatactctcaaaccagagaaaacattactcgtaagtatttttcttccatcctct 27029728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 14135 - 14082
Alignment:
Q  309 acatggatgtgactgtgatgttggtacacactgatttatcttattggacatgaa 362  Q
    |||||||||||| ||||||||||  ||| ||| | |||||||||||||||||||    
T  14135 acatggatgtgattgtgatgttgtcacatactaacttatcttattggacatgaa 14082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University