View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2675_low_14 (Length: 366)

Name: NF2675_low_14
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2675_low_14
NF2675_low_14
[»] chr2 (1 HSPs)
chr2 (2-366)||(36061900-36062268)


Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 2 - 366
Target Start/End: Original strand, 36061900 - 36062268
Alignment:
Q  2 taaaatcacagattacaacaaaaccgtgaacatgaccgcaaactcaatctaaaaccttgatatttaagcacatgagaactatctttgttctactttgaac 101  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36061900 taaaatcacagattacaacaaaaccgtgaacatgaccgcaacctcaatctaaaaccttgatatttaagcacatgagaactatctttgttctactttgaac 36061999  T
Q  102 ccatgttcttgtatttctgtttctgttatcaaatatatcagagttgtaacatgataaaaatactata----tgcatctttaaggttaataaagtgaagaa 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  36062000 ccatgttcttgtatttctgtttctgttatcaaatatatcagagttgtaacatgataaaaatactatatatatgcatctttaaggttaataaagtgaagaa 36062099  T
Q  198 cttaagaatgtttaactaattgttcttacatttactgaagtataatattgcctcttgcacaatataaaaggtaaatgtataaaacataccattcaaagga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36062100 cttaagaatgtttaactaattgttcttacatttactgaagtataatattgcctcttgcacaatataaaaggtaaatgtataaaacataccattcaaagga 36062199  T
Q  298 tttgacaagatcaatctctgagaccaatttctccatcccttttgtaagctcttctactactacaccttc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36062200 tttgacaagatcaatctctgagaccaatttctccatcccttttgtaagctcttctactactacaccttc 36062268  T

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