View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2675_low_23 (Length: 290)
Name: NF2675_low_23
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2675_low_23 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 4704348 - 4704076
Alignment:
| Q |
18 |
caatcttcactcttttacgatcaaatgagaggtaaagcttgttactttcatttacattacgtttatgctttgtttttcctgatgtcgggtaacctttggg |
117 |
Q |
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| T |
4704348 |
caatcttcactcttttacgatcaaataagaggtaaagcttgttactttcatttacattacgtttatgctttgtttttcctgatgtcggataacctttggg |
4704249 |
T |
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| Q |
118 |
agataactcctgagttataatgacaacgagttcgggagatacgtatcgaaccctctctggattgcaatattttttctatgttatttgcatttgattagtg |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4704248 |
agataaatcctgagttataatgacaacgagttcgggagatacgtattgaaccctctctggattgcgatattttttctatgttatttgcatttgattagtg |
4704149 |
T |
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| Q |
218 |
ctttaatgatttannnnnnngtaatatatatacatagatatggttgaatctcctgttgttgcaaactcagatt |
290 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4704148 |
ctttaatgatttttttttttgtaatatatatacatagatatggttgaatctcctgttgttgcaaactcggatt |
4704076 |
T |
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